View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9780_low_13 (Length: 336)
Name: NF9780_low_13
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9780_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 2757745 - 2758055
Alignment:
| Q |
15 |
ataatttaggattgataaactttatcacttagagattaaaacttacaagtattgttagtaaaccaccccactccccccaaaaaagtaaatttgaaccaaa |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2757745 |
ataatttaggattgataaactttatcacttacagattacaacttacaagtattgttagtaaaccaccccactccccccaaaaaagtaaatttaaaccaaa |
2757844 |
T |
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| Q |
115 |
atactttataatgttatcagtccttgaatctattgaccctctcaatcagattattcatagtaatagcaaatgcatcctgaaacttatcaaactcagcatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2757845 |
atactttataatgttatcagtccttgaatctattgaccctctcaatcagattattcatagcaatagcaaatgcatcctgaaacttatcaaactcagcatt |
2757944 |
T |
|
| Q |
215 |
gtgatcaccatatactaaaccaggcaataattcatatacaatatatctcctcatattttctctatctctcaatgaaatattcccaagcctctccaccaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2757945 |
gtgatcaccatatactaaaccaggcaataattcatatacaatatatctcctcatattttctctatctctcaatgaaatattcccaagcctctccaccaca |
2758044 |
T |
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| Q |
315 |
ttcacattcat |
325 |
Q |
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||||||||||| |
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| T |
2758045 |
ttcacattcat |
2758055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 133 - 325
Target Start/End: Original strand, 2753902 - 2754094
Alignment:
| Q |
133 |
agtccttgaatctattgaccctctcaatcagattattcatagtaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaa |
232 |
Q |
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||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2753902 |
agtccttgaatctgctaaccctcttaatcagattgttcatagtaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaa |
2754001 |
T |
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| Q |
233 |
accaggcaataattcatatacaatatatctcctcatattttctctatctctcaatgaaatattcccaagcctctccaccacattcacattcat |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
2754002 |
accaggcaataattcatatacaatatatctcctcatattttccctatctctcaatgaaatattcccaagcctctccatgacactcacattcat |
2754094 |
T |
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