View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9780_low_14 (Length: 300)
Name: NF9780_low_14
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9780_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 4520405 - 4520687
Alignment:
| Q |
1 |
atacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgacagtaaaacagagaaagttgtgcacaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520405 |
atacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgacagtaaaacagagaaagttgtgcacaaata |
4520504 |
T |
|
| Q |
101 |
cagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatnnnnnnngatgccttctacgtcttgcagatgggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4520505 |
cagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatccccccggatgccttctacgtcttgcagatgggaa |
4520604 |
T |
|
| Q |
201 |
tattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaattgaagaaattaaaagtctccttct |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4520605 |
tattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaactgaagaaattaaaagtctccttct |
4520687 |
T |
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