View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9780_low_2 (Length: 645)
Name: NF9780_low_2
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9780_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 587; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 11 - 625
Target Start/End: Complemental strand, 8259483 - 8258869
Alignment:
| Q |
11 |
cacagatcaaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8259483 |
cacagatcaaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgt |
8259384 |
T |
|
| Q |
111 |
gcaatggtggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagc |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8259383 |
gcaatggtggagggtagcgtgagggggagcattgtgtgcacaggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagc |
8259284 |
T |
|
| Q |
211 |
atgcagtgttggggctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8259283 |
atgcagtgttggggctaatgcgtgcggccagtgtgcaactggccacacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgac |
8259184 |
T |
|
| Q |
311 |
ttgtaagttgttggggatgagcgaagagaaagcacaagcgacttaccaaaaatatgcaaggcttgagggagtggtgctcacacccaaacatgtggctgat |
410 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8259183 |
ttgtaagttgtcggggatgagcgaagagaaagcacaagcgacttaccaaaaatatgcaaggcttgagggagtggtgctcacacccaaacatgtggcagat |
8259084 |
T |
|
| Q |
411 |
gctgtattgtttttagtttctgatcaggctgagtttatcacagaccttgatcttagggttgatggtggatttgcatatggaaaatagtgatttgtgcatg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8259083 |
gctgtattgtttttagtttctgatcaggctgagtttatcacagaccttgatcttagggttgatggtggatttgcatatggaaaatagtgatttgtgcatg |
8258984 |
T |
|
| Q |
511 |
aagatataaaaaaccaaataacctttcatttcaaatatatcaaaacaacaacagtaaagggaatcaaatttgttattgtattgatattgagaacttaaat |
610 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8258983 |
aagatataaaaaaccaaataacatttcatttcaaatatatcaaaacaacaacagtaaagggaatcaaatttgttattgtattgatattgagaacttaaat |
8258884 |
T |
|
| Q |
611 |
tctgcaactgtgaga |
625 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
8258883 |
tctgcaagtgtgaga |
8258869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 603
Target Start/End: Complemental strand, 8257171 - 8256567
Alignment:
| Q |
15 |
gatcaaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaa |
114 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||| ||||||||||||||| |||||||||| || ||||| |||||||||||||| || || ||||||| |
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|
| T |
8257171 |
gatcaaacaatcatggaacttgacatgtcccaatttgaccgtttatttgcggtcaatgttcaaggaatggcgttgtgtgtgaaacatgcagcacgtgcaa |
8257072 |
T |
|
| Q |
115 |
tggtggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgc |
214 |
Q |
| |
|
|||||||||||||| | |||||||| || || ||||| || ||||||||| || | |||| || | ||||||||||| |||||||||||||||||||| |
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| T |
8257071 |
tggtggagggtcgcataagggggagtatcgtatgcacagggagtgttagctgtcgtcaaggaggccccaggtcaacggactacacaatgtcaaagcatgc |
8256972 |
T |
|
| Q |
215 |
agtgttggggctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgt |
314 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||| | |||||| || ||||| ||||||||| |
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|
| T |
8256971 |
agtgttgggactaatgcgtgcggctagtgtgcaactggccgcacatggaatacgagtcaactgtgtttcgccgagtggactggcgacacctttgacttgt |
8256872 |
T |
|
| Q |
315 |
aagttgttggggatgagcgaagagaaagcacaagcgacttaccaaaaatatgcaaggcttgagggagtggtgctcacacccaaacatgtggctgatgctg |
414 |
Q |
| |
|
||| | |||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
8256871 |
aagcttttggggatgagcgaggagaaaactcaagagacttaccaaaaatatgcaaggcttgagggagtggtgctcacacccaaacatgtggcagatgctg |
8256772 |
T |
|
| Q |
415 |
tattgtttttagtttctgatcaggctgagtttatcacagaccttgatcttagggttgatggtggatttgcatatggaaaatagtgatttgtgcatgaaga |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
8256771 |
tattgtttttagtttctgatcaggctgagtttattacaggccttgatcttagggttgatggtggatttgcatatggaaaatagtgatttgtgcactaagc |
8256672 |
T |
|
| Q |
515 |
tataaaaaaccaa-------ataacctttcatttcaaatatatcaa---------aacaacaacagtaaagggaatcaaatttgttattgtattgatatt |
598 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||| || |
|
|
| T |
8256671 |
tataataaaccaaataataaataacatttcatttcaaatatatcaaaacagtatcaacaacaacaataaagggaatcaaatttgttgttggattgatttt |
8256572 |
T |
|
| Q |
599 |
gagaa |
603 |
Q |
| |
|
||||| |
|
|
| T |
8256571 |
gagaa |
8256567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 484
Target Start/End: Complemental strand, 8308942 - 8308469
Alignment:
| Q |
11 |
cacagatcaaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgt |
110 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| | |||||||||||||||||||||||| |
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|
| T |
8308942 |
cacagctcaaacaataatggaacttgatatgtcccaacttgaccgtttatttgccgtcaatgtccgtggaatgtcgttgtgtgtgaaacacgcggcgcgt |
8308843 |
T |
|
| Q |
111 |
gcaatggtggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagc |
210 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||| ||||| || || |||||| |||||||| ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
8308842 |
gcaatggtagagggtcacgtaagggggagcatagtgtgtacagggagtgttggcggtagccggggaggctcgaggtcaacggattacacgatgtcaaagc |
8308743 |
T |
|
| Q |
211 |
atgcagtgttggggctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgac |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||| ||| ||||| ||||| | |||||||| ||||| |
|
|
| T |
8308742 |
atgcagtattggggctaatgcgtgcggccagcgtacaactagccgcacacgggataagagtgaactctgtctcgccgaatgggttggcaacacctttgac |
8308643 |
T |
|
| Q |
311 |
ttgtaagttgttggggatgagcgaagagaaagcacaagcgacttaccaaaaatatgcaaggcttgagggagtggtgctcacacccaaacatgtggctgat |
410 |
Q |
| |
|
||||||||||||||| |||||| | ||| ||||||||| || ||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
8308642 |
ttgtaagttgttgggaatgagcaatgaggaagcacaagagaattataaaaattatgcaaggcttgagggagtggtgctcacacctaaacatgtggcagat |
8308543 |
T |
|
| Q |
411 |
gctgtattgtttttagtttctgatcaggctgagtttatcacagaccttgatcttagggttgatggtggatttgc |
484 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | || | |||||||||| || |||||||||||||| |
|
|
| T |
8308542 |
gctgtattgtttttagtttctaatcaggctgagtttgtaactggtcttgatcttattgtcgatggtggatttgc |
8308469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 39 - 499
Target Start/End: Complemental strand, 8289857 - 8289397
Alignment:
| Q |
39 |
atgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgaggggga |
138 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||| || || | ||| ||||||||||| ||| | ||||||| |
|
|
| T |
8289857 |
atgtcccaactagaccgtttattcacaatcaatgttcgaggaatggcattgtgtgtgaaacatgccgcacatgctatggtggaggggcgcattaggggga |
8289758 |
T |
|
| Q |
139 |
gcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagtgttggggctaatgcgtgcggc |
238 |
Q |
| |
|
| |||||||||||||| |||||| | |||| ||| | |||||||||||||||||| ||||||||||| ||||| || |||||||||||||| || |
|
|
| T |
8289757 |
gtattgtgtgcacggggagtgttcacagtagtcatggattcctgaggtcaacggattacacgatgtcaaagcacgcagtattagggctaatgcgtgcagc |
8289658 |
T |
|
| Q |
239 |
cagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaagttgttggggatgagcgaagag |
338 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| |||||||| || || ||||||||||| ||||| ||||||||||| || || ||| |||| | || |
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|
| T |
8289657 |
cagtgtgcaactggctgcacacggaataagagtgaactgtgtctcaccgaatggactagcgacacctttgacttgtaaattattaggggtgagtaaggaa |
8289558 |
T |
|
| Q |
339 |
aaagcacaagcgacttaccaaaaatatgcaaggcttgagggagtggtgctcacacccaaacatgtggctgatgctgtattgtttttagtttctgatcagg |
438 |
Q |
| |
|
|| ||||||| |||||| | ||||||||| ||||| ||||||||||||||||| || |||||||| |||| |||||||||||||| ||| || | | |
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|
| T |
8289557 |
aaggcacaagagacttataagggatatgcaagacttgaaggagtggtgctcacacctaagcatgtggcagatgttgtattgtttttagcttcgaatgatg |
8289458 |
T |
|
| Q |
439 |
ctgagtttatcacagaccttgatcttagggttgatggtggatttgcatatggaaaatagtg |
499 |
Q |
| |
|
|||||||| |||| | |||||||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
8289457 |
ctgagtttgtcaccggccttgatcttagtgtcgacggtggatttgcttatggaaaatagtg |
8289397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 85 - 311
Target Start/End: Complemental strand, 8261997 - 8261771
Alignment:
| Q |
85 |
cattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgag |
184 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| | || || |||||| ||| || ||| |
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|
| T |
8261997 |
cattgtgtgtgaaatacgcggcacgtgcgatggtggaggggcgcgtgaggggtagcattgtgtgcacagcgagcgtattgggtagccaaggtgtcttgag |
8261898 |
T |
|
| Q |
185 |
gtcaacggattacacaatgtcaaagcatgcagtgttggggctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcg |
284 |
Q |
| |
|
|| ||| ||||||||||| || ||||||||| | | ||| | ||||| | || ||||||||||| || | ||||||||||||| || ||||| ||| |
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|
| T |
8261897 |
gttaaccgattacacaatatcgaagcatgcaataatagggttgatgcgctcagcgagtgtgcaacttgcaaaatacgggataagagtgaattgtgtctcg |
8261798 |
T |
|
| Q |
285 |
ccaaatggactagcaacaccattgact |
311 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
8261797 |
ccaaatggattagcaacaccattgact |
8261771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 8325002 - 8324923
Alignment:
| Q |
72 |
gttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgagggggagcattgtgtgcac |
151 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||| ||||| |||||||| || |||||||||| |||||||||||||| |
|
|
| T |
8325002 |
gttcgaggaatggcattgtgcgtgaaacatgcggcacgtgcgatggtggacgggtgcgtgaggggtagcattgtgtgcac |
8324923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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