View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9780_low_3 (Length: 638)

Name: NF9780_low_3
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9780_low_3
NF9780_low_3
[»] chr1 (35 HSPs)
chr1 (18-638)||(7857079-7857698)
chr1 (307-638)||(46814503-46814831)
chr1 (309-638)||(24658645-24658974)
chr1 (298-512)||(27032025-27032237)
chr1 (537-638)||(27031876-27031977)
chr1 (298-638)||(30685940-30686278)
chr1 (297-638)||(46692855-46693194)
chr1 (297-638)||(31585796-31586136)
chr1 (308-638)||(24684514-24684840)
chr1 (458-638)||(5389457-5389639)
chr1 (455-638)||(41920313-41920497)
chr1 (455-638)||(24449966-24450151)
chr1 (497-638)||(9313325-9313467)
chr1 (457-638)||(17033449-17033631)
chr1 (556-638)||(4651743-4651825)
chr1 (565-638)||(5459133-5459206)
chr1 (457-638)||(38544774-38544955)
chr1 (251-382)||(10785617-10785748)
chr1 (223-365)||(16147202-16147341)
chr1 (458-638)||(20113557-20113739)
chr1 (577-638)||(6583252-6583313)
chr1 (556-638)||(19598599-19598681)
chr1 (457-638)||(50589243-50589423)
chr1 (284-340)||(27102003-27102059)
chr1 (230-366)||(52278146-52278279)
chr1 (467-517)||(10785490-10785540)
chr1 (297-339)||(41920186-41920228)
chr1 (577-638)||(32864597-32864658)
chr1 (591-638)||(15840948-15840995)
chr1 (250-379)||(9313518-9313649)
chr1 (300-342)||(20113851-20113893)
chr1 (308-342)||(24450262-24450296)
chr1 (580-638)||(34774858-34774915)
chr1 (592-637)||(27905411-27905456)
chr1 (577-638)||(40933847-40933908)
[»] chr2 (31 HSPs)
chr2 (238-638)||(7873947-7874336)
chr2 (299-638)||(39338901-39339238)
chr2 (225-638)||(17105047-17105457)
chr2 (227-631)||(37770684-37771088)
chr2 (465-638)||(14106560-14106734)
chr2 (313-638)||(10523819-10524142)
chr2 (549-638)||(14405155-14405243)
chr2 (215-382)||(1269105-1269273)
chr2 (250-637)||(41086825-41087208)
chr2 (490-638)||(1269378-1269528)
chr2 (571-638)||(387151-387218)
chr2 (577-638)||(9560824-9560885)
chr2 (465-638)||(10173614-10173789)
chr2 (284-367)||(7695762-7695844)
chr2 (51-108)||(7873708-7873766)
chr2 (556-638)||(13337237-13337319)
chr2 (284-350)||(14106846-14106912)
chr2 (556-638)||(15126446-15126528)
chr2 (556-638)||(18681028-18681110)
chr2 (577-638)||(22885169-22885229)
chr2 (608-638)||(4162056-4162086)
chr2 (556-638)||(4471887-4471968)
chr2 (600-638)||(16959989-16960027)
chr2 (592-638)||(23650384-23650430)
chr2 (556-638)||(27739938-27740020)
chr2 (556-638)||(31902450-31902532)
chr2 (457-518)||(16952539-16952600)
chr2 (457-518)||(17023204-17023265)
chr2 (457-518)||(17060510-17060571)
chr2 (457-518)||(17079033-17079094)
chr2 (610-638)||(23665440-23665468)
[»] chr8 (23 HSPs)
chr8 (206-638)||(15821415-15821844)
chr8 (297-638)||(36630543-36630882)
chr8 (237-638)||(10248589-10248985)
chr8 (308-638)||(37986894-37987223)
chr8 (449-638)||(24995431-24995622)
chr8 (455-638)||(9519359-9519544)
chr8 (455-638)||(32066331-32066516)
chr8 (455-637)||(34389042-34389226)
chr8 (556-638)||(30236164-30236246)
chr8 (556-638)||(31207398-31207479)
chr8 (556-638)||(10552232-10552313)
chr8 (229-379)||(17657298-17657447)
chr8 (297-348)||(34389302-34389353)
chr8 (467-638)||(17657038-17657209)
chr8 (572-638)||(16457497-16457562)
chr8 (458-632)||(17720747-17720921)
chr8 (556-638)||(32945739-32945821)
chr8 (576-638)||(35062440-35062502)
chr8 (297-342)||(32066625-32066670)
chr8 (18-81)||(10248998-10249061)
chr8 (593-638)||(15906686-15906731)
chr8 (608-637)||(33967341-33967370)
chr8 (297-341)||(34866370-34866414)
[»] chr7 (36 HSPs)
chr7 (270-638)||(34389642-34390007)
chr7 (297-638)||(3419692-3420032)
chr7 (297-636)||(38305967-38306304)
chr7 (166-638)||(42533288-42533753)
chr7 (297-638)||(33434814-33435154)
chr7 (489-638)||(35745863-35746012)
chr7 (300-638)||(47325921-47326257)
chr7 (265-638)||(8744828-8745198)
chr7 (455-635)||(3866977-3867158)
chr7 (561-638)||(6584877-6584954)
chr7 (300-638)||(25160525-25160860)
chr7 (455-638)||(10244043-10244227)
chr7 (177-638)||(16954242-16954698)
chr7 (537-636)||(41089786-41089886)
chr7 (455-638)||(5860324-5860509)
chr7 (460-638)||(37794865-37795034)
chr7 (556-638)||(24324834-24324916)
chr7 (556-638)||(38485519-38485601)
chr7 (577-638)||(3478336-3478397)
chr7 (496-631)||(1320696-1320832)
chr7 (467-630)||(44755500-44755663)
chr7 (457-638)||(6716772-6716954)
chr7 (465-638)||(16828972-16829146)
chr7 (230-340)||(6584702-6584810)
chr7 (556-638)||(13311802-13311884)
chr7 (302-384)||(6717019-6717103)
chr7 (297-342)||(10243893-10243938)
chr7 (309-388)||(37794719-37794798)
chr7 (251-340)||(1320455-1320544)
chr7 (580-638)||(12480873-12480931)
chr7 (601-638)||(9349757-9349794)
chr7 (467-638)||(11379163-11379335)
chr7 (284-389)||(9106861-9106964)
chr7 (608-638)||(17802852-17802882)
chr7 (608-638)||(46262155-46262185)
chr7 (556-636)||(47457060-47457140)
[»] chr3 (32 HSPs)
chr3 (453-638)||(23328386-23328569)
chr3 (270-638)||(40023608-40023967)
chr3 (300-638)||(25647391-25647729)
chr3 (300-638)||(34475790-34476125)
chr3 (297-638)||(20611489-20611828)
chr3 (237-636)||(37123037-37123425)
chr3 (300-638)||(19176212-19176547)
chr3 (455-636)||(2392544-2392727)
chr3 (455-636)||(2394291-2394474)
chr3 (177-379)||(4464229-4464430)
chr3 (556-638)||(30935426-30935508)
chr3 (489-638)||(823471-823621)
chr3 (554-636)||(14193901-14193983)
chr3 (577-638)||(45398780-45398841)
chr3 (300-597)||(47235424-47235720)
chr3 (300-394)||(14193646-14193741)
chr3 (579-638)||(14879421-14879480)
chr3 (556-638)||(9584089-9584171)
chr3 (564-637)||(45163824-45163899)
chr3 (556-638)||(47945668-47945751)
chr3 (592-638)||(43012374-43012420)
chr3 (440-527)||(27398805-27398891)
chr3 (575-638)||(31482866-31482929)
chr3 (467-638)||(14755301-14755471)
chr3 (286-380)||(1653175-1653267)
chr3 (603-638)||(20710744-20710779)
chr3 (488-597)||(4464013-4464122)
chr3 (608-638)||(17550972-17551002)
chr3 (576-638)||(24099363-24099425)
chr3 (300-342)||(45163557-45163599)
chr3 (589-637)||(1652923-1652971)
chr3 (51-114)||(14755779-14755843)
[»] chr4 (33 HSPs)
chr4 (457-638)||(2825648-2825828)
chr4 (300-637)||(8254736-8255071)
chr4 (300-637)||(8268154-8268489)
chr4 (465-638)||(31050698-31050871)
chr4 (297-638)||(30964147-30964486)
chr4 (457-638)||(4305587-4305770)
chr4 (158-613)||(19672672-19673121)
chr4 (478-637)||(19815261-19815421)
chr4 (467-638)||(22811196-22811367)
chr4 (467-638)||(25753045-25753217)
chr4 (488-638)||(53823457-53823608)
chr4 (221-339)||(38639744-38639860)
chr4 (457-637)||(12296038-12296219)
chr4 (556-637)||(38929790-38929871)
chr4 (556-636)||(2061776-2061856)
chr4 (590-638)||(49747524-49747572)
chr4 (571-638)||(35800467-35800534)
chr4 (298-412)||(4305432-4305545)
chr4 (604-638)||(26474847-26474881)
chr4 (285-367)||(31050966-31051048)
chr4 (457-527)||(46698933-46699002)
chr4 (577-638)||(39421049-39421110)
chr4 (578-638)||(46698821-46698881)
chr4 (603-638)||(16501741-16501776)
chr4 (564-635)||(19311381-19311451)
chr4 (603-638)||(53756766-53756801)
chr4 (584-638)||(21387240-21387294)
chr4 (608-638)||(40813817-40813847)
chr4 (589-638)||(6599981-6600030)
chr4 (608-637)||(37707392-37707421)
chr4 (608-637)||(39041311-39041340)
chr4 (556-636)||(21987964-21988044)
chr4 (589-637)||(36962652-36962700)
[»] scaffold0068 (1 HSPs)
scaffold0068 (308-638)||(35807-36136)
[»] chr6 (14 HSPs)
chr6 (488-636)||(16510339-16510489)
chr6 (465-612)||(15132585-15132732)
chr6 (458-638)||(3117355-3117538)
chr6 (467-634)||(3880623-3880791)
chr6 (250-638)||(20701839-20702225)
chr6 (458-638)||(32935375-32935556)
chr6 (297-428)||(16510538-16510668)
chr6 (590-638)||(34105410-34105458)
chr6 (567-638)||(26216055-26216125)
chr6 (556-637)||(12794077-12794159)
chr6 (580-636)||(26534757-26534813)
chr6 (590-638)||(21266110-21266158)
chr6 (317-388)||(3117219-3117290)
chr6 (594-638)||(9224042-9224086)
[»] chr5 (26 HSPs)
chr5 (455-638)||(698221-698406)
chr5 (455-638)||(34377958-34378143)
chr5 (455-638)||(18593103-18593288)
chr5 (489-638)||(7392067-7392217)
chr5 (473-638)||(8297347-8297513)
chr5 (230-379)||(26046257-26046405)
chr5 (467-638)||(13954270-13954441)
chr5 (181-383)||(13954521-13954721)
chr5 (556-638)||(31721640-31721722)
chr5 (478-638)||(7195275-7195435)
chr5 (556-637)||(29087444-29087525)
chr5 (556-637)||(33258919-33259000)
chr5 (297-393)||(29087254-29087350)
chr5 (206-369)||(8297091-8297255)
chr5 (457-638)||(24072302-24072484)
chr5 (18-91)||(13954866-13954939)
chr5 (576-638)||(12046238-12046300)
chr5 (297-342)||(18592949-18592994)
chr5 (556-636)||(14302468-14302548)
chr5 (558-638)||(17854103-17854183)
chr5 (608-638)||(39184223-39184253)
chr5 (593-638)||(25992007-25992052)
chr5 (593-638)||(26046000-26046045)
chr5 (317-380)||(7392321-7392385)
chr5 (163-207)||(7392471-7392515)
chr5 (284-367)||(24072568-24072649)
[»] scaffold0063 (3 HSPs)
scaffold0063 (158-379)||(57761-57981)
scaffold0063 (467-638)||(58000-58172)
scaffold0063 (18-112)||(57519-57612)
[»] scaffold0119 (2 HSPs)
scaffold0119 (215-382)||(42429-42597)
scaffold0119 (490-638)||(42174-42324)
[»] scaffold0050 (2 HSPs)
scaffold0050 (467-638)||(36580-36752)
scaffold0050 (223-379)||(36335-36494)
[»] scaffold0200 (1 HSPs)
scaffold0200 (577-638)||(19367-19428)
[»] scaffold1613 (1 HSPs)
scaffold1613 (457-638)||(1053-1234)
[»] scaffold0620 (1 HSPs)
scaffold0620 (590-638)||(3827-3875)
[»] scaffold0062 (1 HSPs)
scaffold0062 (284-340)||(46787-46843)


Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 18 - 638
Target Start/End: Original strand, 7857079 - 7857698
Alignment:
Q  18 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggccgtgggcttcagattctgcttgttttggtggcagactccccgaggtcactgtgtgtttcg 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7857079 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggtcgtgggcttcagattctgcttgttttggtggcagactccccgaggtcactgtgtgtttcg 7857178  T
Q  118 ttttgtactatttcgatgttgtattctgctgtgtggtggtgatgcgtggttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaagggg 217  Q
    |||| ||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7857179 ttttttactacttcgatgttgtattctgttgtgtggtggtggtgcgtggttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaatggg 7857278  T
Q  218 agatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7857279 agatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggg-tgactcctttttggaggctggctctgttactcgggtccatgt 7857377  T
Q  318 tcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgac 417  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7857378 tcgtcgtcactagctcttgtttgcgtctttggggttgtcaaggtgtttagggtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgac 7857477  T
Q  418 tgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  7857478 tgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgggccgattatttttgcttcgagatcgggagt 7857577  T
Q  518 tgatgtctagttggaattatgtttgacttgatatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccg 617  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  7857578 tggtgtctagttgcaattatgtttgacttgatatgttgttctctggtgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccg 7857677  T
Q  618 atcacttttgattcgagatcg 638  Q
    |||||||||||||||||||||    
T  7857678 atcacttttgattcgagatcg 7857698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 307 - 638
Target Start/End: Complemental strand, 46814831 - 46814503
Alignment:
Q  307 cgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatcctt 406  Q
    |||||||||||| ||||||||| ||||||||| | | |||| |||||||  |||||||||| |||||||||||| | ||||||||||||| |||| ||||    
T  46814831 cgggtccatgtttgtcgtcacttgctcttgttggcg-cttttgggttgtttaggtgtttagggtgtttggagggtgcgtgtcccgttgtggttgagcctt 46814733  T
Q  407 ttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcg 506  Q
    ||||||||||||  |||||||| |||||||||| |||||||| || || | ||||| || |||| ||||||| |||  || |||||||||||||| ||||    
T  46814732 ttccttgtgactattttgttgtttgcaccaatcacatatcat-gtctaccatcttatat-ttgtttgctggtgtccgatgggccggttatttttgattcg 46814635  T
Q  507 agatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagt 606  Q
    ||||||||||||| |||||||||| |||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46814634 agatcgagagttggtgtctagttgcaatcctgtttgacttgatatggtgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagt 46814535  T
Q  607 ttggtgggccgatcacttttgattcgagatcg 638  Q
     |||||||||||||||||||||||||||||||    
T  46814534 ctggtgggccgatcacttttgattcgagatcg 46814503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 309 - 638
Target Start/End: Original strand, 24658645 - 24658974
Alignment:
Q  309 ggtccatg-ttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgt-ttgatcctt 406  Q
    |||||||| |||||||||||| ||||||||| | | |||| |||||||  || ||||||| |||||||||||| |||||||||||||||| || | ||||    
T  24658645 ggtccatgattcgtcgtcacttgctcttgttggcg-cttttgggttgtttagatgtttagggtgtttggagggtgtgtgtcccgttgtgtgttaagcctt 24658743  T
Q  407 ttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcg 506  Q
    ||||||||||||  |||||| | || |||||||||||||||| || ||||||||||||| |||||||||||  ||| ||| ||||||||||||||||||     
T  24658744 ttccttgtgactagtttgttttttggaccaatcgcatatcat-gtctatcgtcttacattttgtgtgctggagtccggtgggccggttatttttgcttca 24658842  T
Q  507 agatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagt 606  Q
    |||||| |||||| ||||||| || ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24658843 agatcgggagttggtgtctagctgcaatcatgtttgacttgatatggtgttctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaagt 24658942  T
Q  607 ttggtgggccgatcacttttgattcgagatcg 638  Q
     ||||||||| |||||||||||||||||||||    
T  24658943 ctggtgggccaatcacttttgattcgagatcg 24658974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 298 - 512
Target Start/End: Complemental strand, 27032237 - 27032025
Alignment:
Q  298 tctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgt 397  Q
    ||||| || ||||||  |||||||||||||| |||||||||   | |||| |||||||  |||||| ||| |||||||||||| ||||||||||||||||    
T  27032237 tctgtgacacgggtctttgttcgtcgtcacttgctcttgttatcg-cttttgggttgtttaggtgtgtagggtgtttggagggtgtgtgtcccgttgtgt 27032139  T
Q  398 ttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatt 497  Q
    |||| | ||||||||||||||| || ||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||| |||  |  |||| |||||    
T  27032138 ttgagcattttccttgtgactggttggttgtttgcaccaattgcatatca-tgtctatcgtcttacatattgtgtgctggtgtccgatcggccgattatt 27032040  T
Q  498 tttgcttcgagatcg 512  Q
    |||||||||||||||    
T  27032039 tttgcttcgagatcg 27032025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 537 - 638
Target Start/End: Complemental strand, 27031977 - 27031876
Alignment:
Q  537 tgtttgacttgatatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  27031977 tgtttgagttgatatggtgttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagat 27031878  T
Q  637 cg 638  Q
    ||    
T  27031877 cg 27031876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 298 - 638
Target Start/End: Complemental strand, 30686278 - 30685940
Alignment:
Q  298 tctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgt 397  Q
    |||||||| || |||||||||||| ||||||||||||||||||||  ||| |||| ||  |||||||||  | ||||||||||   ||||| ||||||||    
T  30686278 tctgttacacgagtccatgttcgttgtcactagctcttgtttgtgctttttgggtggtttaggtgtttacggagtttggagggttcgtgtcacgttgtgt 30686179  T
Q  398 ttgatccttttccttgtga-ctgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttat 496  Q
    | || |||||||||| ||| ||| |||||||| |  ||   |||| || | |||| | ||||||||||||||||||| |||||| | ||| |||||||      
T  30686178 t-gagccttttccttttgatctg-tttgttgtttaaact--tcgcttacc-ttgtctttcgtcttacatattgtgtgttggttttcggtgggccggttca 30686084  T
Q  497 ttttgcttcgagatcgagagttgatgtctagttggaattat-gtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatt 594  Q
    ||| |||||||||||| |||| || |||||  || |||  | |||||||||||| || || |||||||||||||| ||||| |||||||||||||| |||    
T  30686083 tttggcttcgagatcgggagtcgaggtctaactgcaatccttgtttgacttgatttggtttttctctggtgtacctggggcgaggggtgccctgctaatt 30685984  T
Q  595 tggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| ||| ||| | ||||||||||||||||||||| |||||||    
T  30685983 tggtactatagtcttgtgggccgatcacttttgatttgagatcg 30685940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 297 - 638
Target Start/End: Complemental strand, 46693194 - 46692855
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||  ||| ||||  |  |||||||||  | |||||||||| ||||||   ||||||    
T  46693194 ctctgttacacgggtacatgttcgtcgtcactagctcttgtttgtgcttttcgggtgttttaggtgtttacggagtttggagggtgtgtgttatgttgtg 46693095  T
Q  397 tttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttat 496  Q
    || || ||||||| || ||| |  ||||||||    ||   || |||  ||| || | | ||||||||||||||||||| |||| | ||| |||| ||      
T  46693094 tt-gagccttttctttttgatttgtttgttgttcaaact--tcacatgccat-gtcttttgtcttacatattgtgtgctagttttcggtgggccgattca 46692999  T
Q  497 ttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatt 594  Q
    ||| |||||||||||| |||| || ||||||||| ||| | ||||||||||||| || || |||||||||||||||||||| || ||||||||||| |||    
T  46692998 tttggcttcgagatcgggagtcgaggtctagttgcaatctttgtttgacttgatttgatttttctctggtgtaccgggggcgagaggtgccctgctaatt 46692899  T
Q  595 tggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||  || ||| |||||||||||||||||||||||||||||||    
T  46692898 tggtgatatagtctggtgggccgatcacttttgattcgagatcg 46692855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 297 - 638
Target Start/End: Complemental strand, 31586136 - 31585796
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgttt-gtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgt 395  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||  ||| |||| ||  ||||||||| || |||||||||| | ||||| |||| |    
T  31586136 ctctgttacacgggtccatgttcgtcgtcactggctcttgttttgtgctttttgggtggtttaggtgtttacagagtttggagggtgcgtgtcacgttat 31586037  T
Q  396 gtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggtta 495  Q
    ||| || |||||||||| ||| |  |||||||| |  ||   ||||||  ||| || | |||||||||||| ||| ||||| |||   ||| |||||||     
T  31586036 gtt-gagccttttccttttgatttgtttgttgtttaaact--tcgcatgccat-gtctttcgtcttacatagtgtttgctgatttttggtgggccggttc 31585941  T
Q  496 tttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgat 593  Q
     ||| |||||||||||| |||| |  |||||| || ||| | ||||||||||||| || || ||||||||||||| | |||  |||||||||||||| ||    
T  31585940 atttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtactgagggtgaggggtgccctgctaat 31585841  T
Q  594 ttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| ||| ||| |||||||||||||||||||||||||||||||    
T  31585840 ttggtactatagtctggtgggccgatcacttttgattcgagatcg 31585796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 308 - 638
Target Start/End: Complemental strand, 24684840 - 24684514
Alignment:
Q  308 gggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttt 407  Q
    |||||| ||||| |||||||||||||||||||||| |||| |||| ||  ||| || ||    |||||||||| ||||||||| |||||  ||| |||||    
T  24684840 gggtccttgttcatcgtcactagctcttgtttgtgccttttgggtggtttaggagtctacgaagtttggagggtgtgtgtccctttgtg-atgagccttt 24684742  T
Q  408 tccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcga 507  Q
    ||||||||| |  | |||||  |  ||   ||||||  || ||| | |||||||||||||||||||||||||| | ||| |||  ||  ||| |||||||    
T  24684741 tccttgtgatttgtctgttggttaaac--ttcgcatgcca-tgtctttcgtcttacatattgtgtgctggttttcggtg-gccaattcatttggcttcga 24684646  T
Q  508 gatcgagagttgatgtctagttggaat-tatgtttgacttgatatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagt 606  Q
    ||||| |||| |  |||||| || ||| | ||||||||||||| || | |||||||||||||||||||| ||||||||||| || ||||| |||||||||    
T  24684645 gatcgggagtcggggtctagctgtaatctttgtttgacttgatttggttttctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagt 24684546  T
Q  607 ttggtgggccgatcacttttgattcgagatcg 638  Q
     ||||||||||||||||||| |||||||||||    
T  24684545 ctggtgggccgatcacttttaattcgagatcg 24684514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 458 - 638
Target Start/End: Complemental strand, 5389639 - 5389457
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttg 555  Q
    ||||||||||||||||||||||| ||||| |||||||  ||| |||||||||||| ||||    |||||| || ||| | ||||||||||||| || ||     
T  5389639 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctgcaatctttgtttgacttgatttgattt 5389540  T
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||||| |||||||||| ||| ||||||| ||| ||| ||  |||||||||||||||||||||||||||    
T  5389539 ttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcg 5389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 455 - 638
Target Start/End: Original strand, 41920313 - 41920497
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg- 552  Q
    ||||||||||||||||||||| |||| | ||| |||||||  ||| |||||||||||| |||| |  |||||| || ||| | ||||||||||||| ||     
T  41920313 tcgtcttacatattgtgtgctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttgg 41920412  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || ||||||||||||| |||| | |||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  41920413 tttttctctggtgtactgggg-cgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcg 41920497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 455 - 638
Target Start/End: Complemental strand, 24450151 - 24449966
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg- 552  Q
    |||||||||||||| |||| |||||| |  || |||| ||  ||| |||||||||||| |||| |  |||||| || ||| | ||||||||||| | ||     
T  24450151 tcgtcttacatattatgtgttggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttggtttgg 24450052  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || |||||||||||||||||||| ||||||||||||||  |||||| ||| ||||||||||||||||||||||||||| |||||||    
T  24450051 tttttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcg 24449966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 497 - 638
Target Start/End: Complemental strand, 9313467 - 9313325
Alignment:
Q  497 ttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtgtaccgggggcaaggggtgccctgctgattt 595  Q
    |||||||||||||||| |||||| ||||||| || |||| |||||| | |||| || |||| |||| ||||| |||| |  ||||||||||| |||||||    
T  9313467 ttttgcttcgagatcgggagttggtgtctagctgcaattttgtttgccgtgatttggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgattt 9313368  T
Q  596 ggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||| ||||||| | |||||| ||||||||||||||||||||||    
T  9313367 ggtcctaaagtctagtgggctgatcacttttgattcgagatcg 9313325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 638
Target Start/End: Original strand, 17033449 - 17033631
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttg- 555  Q
    ||||||| ||||||||||||| |||  ||| |||||||| ||||| ||||||||||||| |||  ||||||||| |||  |||||| ||   || | ||     
T  17033449 gtcttacttattgtgtgctggattctggtgggccggttacttttgtttcgagatcgagaattggcgtctagttgcaatcttgtttggctgactacggtga 17033548  T
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| ||||| |||| | | | |||||||||| |||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  17033549 ttctatggtgaaccgagagtagggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcg 17033631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 4651743 - 4651825
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||||||||||| |||||||||||| |||| || ||||  |||| ||| |||||||||||||||||||||||||||    
T  4651743 ttctctggtgtaccgggggtaaggggtgcccttctgaatttgttccgaagtctggggggccgatcacttttgattcgagatcg 4651825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 638
Target Start/End: Original strand, 5459133 - 5459206
Alignment:
Q  565 gtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||| |||||| ||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  5459133 gtaccgggggcgaggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcg 5459206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 457 - 638
Target Start/End: Complemental strand, 38544955 - 38544774
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatat--gtt 554  Q
    ||||||||||||||||||||| ||| |||| |||| ||| |||||||||||||| | |||||| ||||||| || |||  ||||||| ||||| |  ||     
T  38544955 gtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatcttgtttga-ttgattttggtg 38544857  T
Q  555 gttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     |||||||||| || |||    |||||| |||| ||||||||||  | |||| ||||||||||||| |||||||||||||||||    
T  38544856 tttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcg 38544774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 382
Target Start/End: Complemental strand, 10785748 - 10785617
Alignment:
Q  251 tgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgtt-cgtcgtcactagctcttgtttgtgtctttgg 349  Q
    |||||||| | || ||| |||||||||| | ||||| |||||||| |||||||||| |||||   ||| ||||||||||| | ||||||||  | |||||    
T  10785748 tgaggaggcaagtgtttattgggggtgatttctttt-ggaggctgcctctgttacttgggtcttggtttcgtcgtcactaacccttgtttgcatttttgg 10785650  T
Q  350 ggttgtcaaggtgtttagagtgtttggagggag 382  Q
    |||||| ||||||||||| ||||||||||||||    
T  10785649 ggttgttaaggtgtttagggtgtttggagggag 10785617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 365
Target Start/End: Original strand, 16147202 - 16147341
Alignment:
Q  223 tataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtc 322  Q
    ||||||| ||||| ||||||| ||||||||||||||  ||| ||  |||||| ||| | | ||| |||||| | ||||||||| |||| |||||||||||    
T  16147202 tataagatggtggttggtgttgtttaggtgaggaggtgggtgttgcttgggg-tgatttccttt-ggaggcagcctctgttacacgggcccatgttcgtc 16147299  T
Q  323 gtcactagctcttgtttgtgtctttggggttgtcaaggtgttt 365  Q
    ||||||||||||| |||| || ||| ||||||| |||||||||    
T  16147300 gtcactagctcttatttgcgt-ttttgggttgttaaggtgttt 16147341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 458 - 638
Target Start/End: Complemental strand, 20113739 - 20113557
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttg 555  Q
    |||||||||||||||||| |||| | ||| |||||||  ||| |||||||||||| |||| |  |||||| || ||| | |||| ||  || | || ||     
T  20113739 tcttacatattgtgtgctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgttagatatggtttggttt 20113640  T
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| |||||||||||||| |||||||||||||| |||||||  || ||| || |||| |||||| ||||||||| ||||||    
T  20113639 ttctcgggtgtaccgggggcgaggggtgccctgctaatttggtattatagtctgctgggacgatcatttttgattcaagatcg 20113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 6583313 - 6583252
Alignment:
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||| | |||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  6583313 aggggtgcctttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcg 6583252  T

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Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 19598599 - 19598681
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||| ||| |||||||||||  ||| || ||| || |||| ||||||||||||| |||||||||||||||||    
T  19598599 ttctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagatcg 19598681  T

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Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 457 - 638
Target Start/End: Complemental strand, 50589423 - 50589243
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgt 556  Q
    ||||||||||||||||||||| |||  ||| |||||||| |||||||||||||||| || |||  |||||| ||   |  |||||| || | || | | |    
T  50589423 gtcttacatattgtgtgctggattctggtgggccggttaattttgcttcgagatcgggacttggcgtctagctgctttcttgtttggctggctacggt-t 50589325  T
Q  557 tctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||| || ||||| |||||||||||  ||| || ||| || ||||  ||||||| |||| |||||||||||| ||||    
T  50589324 tctctggtggactgggggtaaggggtgcccgtctggttgggtcctgaagtccggtgggctgatcgcttttgattcgaaatcg 50589243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 27102003 - 27102059
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttg 340  Q
    |||||||||| | ||||||||||||||||| | ||||||||||| ||||||||||||    
T  27102003 ttttggaggcggcctctgttactcgggtccttcttcgtcgtcacgagctcttgtttg 27102059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 366
Target Start/End: Original strand, 52278146 - 52278279
Alignment:
Q  230 gggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcacta 329  Q
    |||| ||| ||||| |||||||||||||| |||| |||||||||| ||| |  | ||||||||  | || |||| | |||||||||||||||||| ||||    
T  52278146 gggtagctagtgttgtttaggtgaggaggcaggtgtttgttgggg-tgattt-tctttggaggaagcctttgtttcacgggtccatgttcgtcgttacta 52278243  T
Q  330 gctcttgtttgtgtctttggggttgtcaaggtgttta 366  Q
    ||||||||| | || ||| ||||||| ||||||||||    
T  52278244 gctcttgttggcgt-ttttgggttgttaaggtgttta 52278279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 10785540 - 10785490
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagt 517  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||| ||||    
T  10785540 ttgtgtgctggtttccggtgggccggttaattttgcttcgagatcgggagt 10785490  T

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Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 41920186 - 41920228
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgttt 339  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  41920186 ctctattacacgggtccatgttcgtcgtcactagctcttgttt 41920228  T

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Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 32864658 - 32864597
Alignment:
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||| | |||||||| ||||||  ||||||||| ||||||||| |||||||||||    
T  32864658 aggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcg 32864597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 591 - 638
Target Start/End: Complemental strand, 15840995 - 15840948
Alignment:
Q  591 gatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||| ||||| ||| |||||||| ||||||||||||||||||||||    
T  15840995 gatttgtttctagagtctggtgggctgatcacttttgattcgagatcg 15840948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 9313649 - 9313518
Alignment:
Q  250 gtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtcttt-- 347  Q
    |||||||||| ||  |||||||||||||| | | ||||| |||| | || ||||||| |||||| |||| ||||||| |||||||||| || || |||      
T  9313649 gtgaggaggagggcgtttgttgggggtgatttc-ttttgaaggcagcctttgttacttgggtccttgtttgtcgtcaatagctcttgtatgcgttttttt 9313551  T
Q  348 -ggggttgtcaaggtgtttagagtgtttggagg 379  Q
     |||||||  ||||||||||  |||||||||||    
T  9313550 gggggttgctaaggtgtttatggtgtttggagg 9313518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 20113893 - 20113851
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||    
T  20113893 tgttacacgggttcatgttcgtcgtctctagctcttgtttgtg 20113851  T

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Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 24450296 - 24450262
Alignment:
Q  308 gggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    |||||||||||||||||| ||||||||||||||||    
T  24450296 gggtccatgttcgtcgtctctagctcttgtttgtg 24450262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 34774858 - 34774915
Alignment:
Q  580 ggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||| |||||||||| |||| || |||||| |||||||||||||| |||||||||    
T  34774858 ggtgcccttctgatttggtcctaacgtctggtggaccgatcacttttga-tcgagatcg 34774915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 637
Target Start/End: Original strand, 27905411 - 27905456
Alignment:
Q  592 atttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    |||||| | |||||| |||||| |||||||||||||||||||||||    
T  27905411 atttgggtttaaagtctggtggaccgatcacttttgattcgagatc 27905456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 638
Target Start/End: Original strand, 40933847 - 40933908
Alignment:
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||| ||| ||| |||||||| |||||||||||  |||||| ||||||||| |||||||    
T  40933847 aggggtgtcctcctgttttggttcgaaagtttggtgaaccgatcgcttttgatttgagatcg 40933908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 238 - 638
Target Start/End: Original strand, 7873947 - 7874336
Alignment:
Q  238 ggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgt 337  Q
    |||||| |||| |||||||||| ||| |||||||||||||| |   ||||||||||    |||||| | ||||||| ||| | |||||||| ||||||||    
T  7873947 ggtgttgtttacgtgaggaggagggt-tttgttgggggtgagttacttttggaggcaacatctgtttcacgggtccttgtccatcgtcacttgctcttgt 7874045  T
Q  338 ttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaa 437  Q
    | ||| |||| |||||||        |||| ||||||||| || ||||||||||||||||||||  |||||||||||||||| |||||||| ||||||||    
T  7874046 tggtg-cttttgggttgt--------ttagggtgtttggatggtgtgtgtcccgttgtgtttgagtcttttccttgtgactggtttgttgtttgcaccaa 7874136  T
Q  438 tcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattat 537  Q
    ||||||||||| || |||||||||| ||||||||||||||| ||| ||| ||||||| ||||||||||||||||| |||||| ||||||| || |||  |    
T  7874137 tcgcatatcat-gtctatcgtcttaaatattgtgtgctggtgtccggtgggccggttttttttgcttcgagatcgggagttggtgtctagctgcaatcct 7874235  T
Q  538 gtttgacttgatatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    | ||||||||||||| |||||||| |||||||| |||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  7874236 gcttgacttgatatggtgttctctagtgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatc 7874335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 299 - 638
Target Start/End: Complemental strand, 39339238 - 39338901
Alignment:
Q  299 ctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtt 398  Q
    ||||||| |||||||||||||||||| |||||||||||||||||  ||| |||| ||  |||||||||    |||||||||| ||||||| |||||||||    
T  39339238 ctgttacacgggtccatgttcgtcgttactagctcttgtttgtgctttttgggtggtttaggtgtttacgaagtttggagggtgtgtgtcacgttgtgtt 39339139  T
Q  399 tgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttattt 498  Q
     || |||||||||| ||| |  ||| ||||    ||   ||||||  ||| || | |||||||||||||||||||||||||| | ||| ||| |||  ||    
T  39339138 -gagccttttccttttgatttgtttattgttcaaact--tcgcatgccat-gtctttcgtcttacatattgtgtgctggttttcggtgggccagttcatt 39339043  T
Q  499 ttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttg 596  Q
    | |||||||||||| |||| |  |||||| || ||| | ||||||||||||| || || |||| ||||||||||||||| |||||||||||||| |||||    
T  39339042 tggcttcgagatcgggagtcggggtctagctgcaatatttgtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttg 39338943  T
Q  597 gttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || ||| ||| ||||||||||||| |||||||||||||||||    
T  39338942 gtactatagtctggtgggccgatcgcttttgattcgagatcg 39338901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 225 - 638
Target Start/End: Original strand, 17105047 - 17105457
Alignment:
Q  225 taagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgt 324  Q
    |||| ||||||| |||||| ||||||||||||||   || |||||||||| ||| | | ||| |||||| | ||||| ||| | ||||||||||||||||    
T  17105047 taagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttgggg-tgatttccttt-ggaggcagcctctgctacacaggtccatgttcgtcgt 17105144  T
Q  325 cactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttg 424  Q
    ||||||||||| ||||    |||  || ||| ||||||||||| |||||| ||||| |  |||||||||||| | || |||||||||| ||| |  ||||    
T  17105145 cactagctcttatttgcacttttttggctgttaaggtgtttagggtgtttagagggtgcttgtcccgttgtgat-gagccttttccttttgatttgtttg 17105243  T
Q  425 ttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtc 524  Q
     ||| ||||||| || |||||||| || | || ||||||||||||||||||||||||| ||| | |||||| |||||||| |||||   |||| |  |||    
T  17105244 gtgtttgcacca-tctcatatcat-gtctttcatcttacatattgtgtgctggtttccggtgggtcggttacttttgcttggagataaggagtcggcgtc 17105341  T
Q  525 tagttggaattatgtttgacttga-tatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcac- 622  Q
    ||| || ||   |||||||||| | || ||  |||| ||||||||| ||||  ||||||||||| |||||||||| || |||| || ||||||||||||     
T  17105342 tagctgcaaccttgtttgacttaattaggtgtttctttggtgtaccaggggtgaggggtgccctactgatttggtactgaagtctgatgggccgatcact 17105441  T
Q  623 ttttgattcgagatcg 638  Q
    ||||||||||||||||    
T  17105442 ttttgattcgagatcg 17105457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 227 - 631
Target Start/End: Complemental strand, 37771088 - 37770684
Alignment:
Q  227 agagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtca 326  Q
    ||||||||| ||||||| ||||||||||||||  ||| ||||||| |||||| | || || |||||||| |||| | |||||||||| ||||||||||||    
T  37771088 agagggtggttggtgttgtttaggtgaggaggcgggtgtttgttgagggtgatttctgtt-ggaggctgcctctataactcgggtccttgttcgtcgtca 37770990  T
Q  327 ctagctcttgttt--gtgtctttggggttgtcaaggtg-tttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgattt 423  Q
    |||||| ||||||  || | ||||||||||| |||||| ||||| ||||||||||| | || |||  |||||| |||| | | |||||| ||| | |||     
T  37770989 ctagcttttgtttgcgtttttttggggttgttaaggtgttttagggtgtttggaggaaatgggtcatgttgtg-ttgagcttcttccttttgatttattc 37770891  T
Q  424 gttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgt 523  Q
    ||||| |||||| | || ||||| ||||   | ||| | | | |||| ||||||||  | ||| |||||||| |||||||||||||||| |||||| |||    
T  37770890 gttgtttgcacc-accgtatatc-ttgtcgtttgtcatgctttttgtttgctggttatcggtgggccggttacttttgcttcgagatcgggagttggtgt 37770793  T
Q  524 ctagttggaattatgtttgacttgatat-gttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcac 622  Q
    ||||  | ||||   |||| |  ||| | ||  ||||||||||||||| |||  ||||||||||  |||||||||| |||| ||||||||||||||||||    
T  37770792 ctagcagcaattcgatttggcgcgatttagtgtttctctggtgtaccgagggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcac 37770693  T
Q  623 ttttgattc 631  Q
    |||||||||    
T  37770692 ttttgattc 37770684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 465 - 638
Target Start/End: Complemental strand, 14106734 - 14106560
Alignment:
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttc-tctgg 563  Q
    ||||||||| |||||||| ||| |||||||| |||||||||||||  | |||| | || |||| || |||  ||||||||||||| || ||||| |||      
T  14106734 tattgtgtgttggtttccggtgggccggttacttttgcttcgagacagggagtcggtgactagctgcaatcctgtttgacttgatttggtgttcctctca 14106635  T
Q  564 tgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||  |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  14106634 tgtacccagggcgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcg 14106560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 313 - 638
Target Start/End: Original strand, 10523819 - 10524142
Alignment:
Q  313 catgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttcctt 412  Q
    ||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||  | ||||| |||| | ||||| ||||||||| || ||||||| ||    
T  10523819 catgttcgtcgtcactagctcttgtttgtgcttttcgggtggtttaggtgtttacggagtttgtagggtgcgtgtcacgttgtgtt-gagccttttcttt 10523917  T
Q  413 gtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcg 512  Q
     ||| |  ||||||||   ||    ||||||  ||| || | || ||||||||||||||||||||||| | |||  ||||||  ||| ||||||||||||    
T  10523918 ttgatttgtttgttgtt--caaatttcgcatgccat-gtctttcatcttacatattgtgtgctggttttcggtggaccggttcatttggcttcgagatcg 10524014  T
Q  513 agagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttgg 610  Q
     |||| |   |||||||| ||| | ||||||||||||| || || ||||||||| ||| |||||| || ||||||||||  ||||||| ||| ||| |||    
T  10524015 ggagtcgggctctagttgcaatctttgtttgacttgatttggtttttctctggtctactgggggcgagaggtgccctgccaatttggtgctatagtctgg 10524114  T
Q  611 tgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||||||||||||||||||||    
T  10524115 tgggccgatcacttttgattcgagatcg 10524142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 549 - 638
Target Start/End: Original strand, 14405155 - 14405243
Alignment:
Q  549 tatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||||||||||||||||||| ||||||||  || ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14405155 tatgttgttctctggtgtaccgggggcgaggggtgct-tgatgatttggttctaaagtctggtgggccgatcacttttgattcgagatcg 14405243  T

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Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 215 - 382
Target Start/End: Original strand, 1269105 - 1269273
Alignment:
Q  215 gggagatttataagagggtggctggtgtttt-ttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtcc 313  Q
    ||||| |||||||| |||| |||| |||| | |||||||||||||  ||| |||||||||||||| | ||| | ||||| || |||| ||||||||||||    
T  1269105 gggagctttataagggggttgctgatgttatgttaggtgaggaggcgggtgtttgttgggggtgatttcttct-ggaggttgcctctattactcgggtcc 1269203  T
Q  314 atgtt-cgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggag 382  Q
     |||| |||||||||||||||||||||| || ||||||||||| || |||||||  ||||||||||||||    
T  1269204 ttgtttcgtcgtcactagctcttgtttgcgtttttggggttgttaaagtgtttatggtgtttggagggag 1269273  T

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Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 637
Target Start/End: Complemental strand, 41087208 - 41086825
Alignment:
Q  250 gtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttg 348  Q
    |||||||||  ||| |||||||||||||| | ||||| |||| | | ||||||||||||||||| | |||||||| |||||||||||| || | | ||||    
T  41087208 gtgaggaggcgggtgtttgttgggggtgatttctttt-ggagtcagcctctgttactcgggtccttattcgtcgttactagctcttgtatgcgttttttg 41087110  T
Q  349 gggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtga-ctgatttgttgtctgcaccaatcgcatatca 447  Q
    ||||||| ||||||| ||| ||||||||||| || | ||||||||| |  | | |||||||||  ||| ||| |||||||  |||| | | ||| ||||     
T  41087109 gggttgttaaggtgtctagggtgtttggaggtagcgggtcccgttgag-ctaagccttttcctattgatctg-tttgttgcttgca-ctaccgcttatc- 41087014  T
Q  448 ttgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttg 547  Q
    ||||   | ||| ||| | |||||||| ||||||| |||  ||| ||| |||||||| ||||||| || | | |||| || |  |||| |||||| | ||    
T  41087013 ttgtcgtttgtcctacttgttgtgtgcaggtttccggtggaccgattacttttgctttgagatcgggaatcggtgtccagctacaattttgtttggcgtg 41086914  T
Q  548 atatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    || || |||||||||||||||| ||||  | ||||||||| ||||||||||  || ||| ||||||| | ||||||||||||||||||||    
T  41086913 atttggtgttctctggtgtaccaggggtga-gggtgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatc 41086825  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 638
Target Start/End: Original strand, 1269378 - 1269528
Alignment:
Q  490 cggttatttttgcttcgagatcgagagttgatgtctagttggaattatgttt-gacttgatatgttgtt-ctctggtgtaccgggggcaaggggtgccct 587  Q
    |||||| |||||||||||||||| |||| ||||||||| || | |  ||||| | ||| || || |||| ||||||| ||||   ||  |||||||||||    
T  1269378 cggttaattttgcttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgccct 1269477  T
Q  588 gctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     ||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  1269478 tctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcg 1269528  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 638
Target Start/End: Original strand, 387151 - 387218
Alignment:
Q  571 ggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| |||||||||||||| ||||||| ||||||| |||||||| |||||||||||||| |||||||    
T  387151 ggggcgaggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcg 387218  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 9560885 - 9560824
Alignment:
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||| || |||||||  || |||||||||||| ||||||||||||||||||||||||    
T  9560885 aggggtgccttgatgatttgtgtcgaaagtttggtggaccgatcacttttgattcgagatcg 9560824  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 638
Target Start/End: Complemental strand, 10173789 - 10173614
Alignment:
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatat--gttgttctctg 562  Q
    ||||||||  |||||||| ||| || ||||| ||||| |||| |||||  ||| | ||||||| || |||  |||||| |||||||   ||  |||||||    
T  10173789 tattgtgtattggtttccggtgtgctggttacttttgtttcgggatcggaagtcggtgtctagctgcaatcttgtttggcttgataacggtgtttctctg 10173690  T
Q  563 gtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||| | ||  | |||||| ||  || |||||| ||||||| | |||||||||||||||||||||||||||||    
T  10173689 gtgtaccagaggtgaagggtgctcttttgttttggtcctaaagtctagtgggccgatcacttttgattcgagatcg 10173614  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 284 - 367
Target Start/End: Original strand, 7695762 - 7695844
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttag 367  Q
    |||| ||||||| ||||||||||||||||| ||||||  ||| ||||||||| |||| || ||| ||||||| |||||||||||    
T  7695762 ttttagaggctgcctctgttactcgggtccttgttcgctgtccctagctctt-tttgcgttttttgggttgttaaggtgtttag 7695844  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 7873708 - 7873766
Alignment:
Q  51 cggtggccgtgg-gcttcagattctgcttgttttggtggcagactccccgaggtcactg 108  Q
    |||||||||||| |||| ||||| |||||||||||||||||||| ||||||| ||||||    
T  7873708 cggtggccgtggtgctttagattttgcttgttttggtggcagaccccccgagatcactg 7873766  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 13337237 - 13337319
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||| |||  | |||||||||| ||||||||    |||||| || ||||||||||||||||||||||| ||||    
T  13337237 ttctctggtgtaccagggtgagggggtgcccttctgatttgaccttaaagtctgatgggccgatcacttttgattcgaaatcg 13337319  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 14106912 - 14106846
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggg 350  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||  |||| || |||| ||||||    
T  14106912 ttttggaggctgcttctgttactcgggtccatggtcgtcgtcactaattcttattggtgtttttggg 14106846  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 15126528 - 15126446
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||||||| ||||||| |||  ||  || ||| || |||| |||||||||||||| ||||||||||||||||    
T  15126528 ttctctggtggaccgggggtaaggggttcccgtctcgttgggtcctgaagtctggtgggccgatcatttttgattcgagatcg 15126446  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 18681028 - 18681110
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||| ||| |||||||| ||||  |||||| ||||||||||| | |||| ||||||||||||  | |||||||||||||||    
T  18681028 ttctctagtggaccgggggtaaggactgcccttctgatttggttatgaagtatggtgggccgattgcatttgattcgagatcg 18681110  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 22885229 - 22885169
Alignment:
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||| |||| | || |||| |||||||||||||||||||||||||||||||    
T  22885229 aggggtgccc-gctggtttgatcctgaagtctggtgggccgatcacttttgattcgagatcg 22885169  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 638
Target Start/End: Complemental strand, 4162086 - 4162056
Alignment:
Q  608 tggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||||||||||||||||    
T  4162086 tggtgggccgatcacttttgattcgagatcg 4162056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 4471887 - 4471968
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||||||| |||||| ||||  ||| |||||| ||  ||| ||||||||||||| | |||||||||||||||    
T  4471887 ttctctggtggaccgggggtaagggg-gcccgtctggtttggtcctggagtctggtgggccgatcgcctttgattcgagatcg 4471968  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 638
Target Start/End: Original strand, 16959989 - 16960027
Alignment:
Q  600 ctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  16959989 ctaaagtctggtgggccgatcgcttttgattcgagatcg 16960027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 638
Target Start/End: Original strand, 23650384 - 23650430
Alignment:
Q  592 atttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||| ||| |||||||| |||| |||||||||||||||||    
T  23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcg 23650430  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 27739938 - 27740020
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| || |||||  ||||||||||  |||  ||||| || |||| ||||||||||||| |||||||||| ||||||    
T  27739938 ttctctggtggactgggggttaggggtgcccatctggattggtcctgaagtctggtgggccgatcgcttttgattcaagatcg 27740020  T

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Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 31902532 - 31902450
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| ||||||||  ||||||| ||| || ||||| | || |||| ||||||||| ||| ||||| |||||||||||    
T  31902532 ttctctggtggaccgggggttaggggtgtccttcttatttgatgctgaagtctggtgggccaatcgcttttaattcgagatcg 31902450  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 16952600 - 16952539
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagtt 518  Q
    |||||||||||||||||||||||| |  ||  | ||||| |||| |||||||||||||||||    
T  16952600 gtcttacatattgtgtgctggttttcgatggactggttacttttacttcgagatcgagagtt 16952539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 17023265 - 17023204
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagtt 518  Q
    |||||||||||||||||||||||| |  ||  | ||||| |||| |||||||||||||||||    
T  17023265 gtcttacatattgtgtgctggttttcgatggactggttacttttacttcgagatcgagagtt 17023204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 17060571 - 17060510
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagtt 518  Q
    |||||||||||||||||||||||| |  ||  | ||||| |||| |||||||||||||||||    
T  17060571 gtcttacatattgtgtgctggttttcgatggactggttacttttacttcgagatcgagagtt 17060510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Original strand, 17079033 - 17079094
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagtt 518  Q
    |||||||||||||||||||||||| |  ||  | ||||| |||| |||||||||||||||||    
T  17079033 gtcttacatattgtgtgctggttttcgatggactggttacttttacttcgagatcgagagtt 17079094  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 610 - 638
Target Start/End: Complemental strand, 23665468 - 23665440
Alignment:
Q  610 gtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||||||||||||||    
T  23665468 gtgggccgatcacttttgattcgagatcg 23665440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 9e-81; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 206 - 638
Target Start/End: Complemental strand, 15821844 - 15821415
Alignment:
Q  206 tttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttac 305  Q
    |||||| | ||||| | |||||| | ||||||| |||| ||||||||||||||  ||| |||||||||| ||| | |||||||||||| | |||| || |    
T  15821844 tttgcggacgggagctatataagggagtggctgatgttgtttaggtgaggaggcgggtgtttgttgggg-tgatttctttttggaggcagcctctatttc 15821746  T
Q  306 tcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatcct 405  Q
      |||||||| || ||||||||  ||||||||| | | |||| | |||||  ||||| | ||  ||||||||||| | |||||| ||||||||||| |||    
T  15821745 atgggtccatatttgtcgtcacgtgctcttgttggcg-cttttgagttgtttaggtgctaaggttgtttggagggtgcgtgtcctgttgtgtttgagcct 15821647  T
Q  406 tttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttc 505  Q
    |||||||||||||| |||||||| |||||||||| |||||||| || ||||||||||||||||||||| |||| ||  ||| |||| |||||||| |||     
T  15821646 tttccttgtgactggtttgttgtttgcaccaatcacatatcat-gtctatcgtcttacatattgtgtgttggtatctggtgggccgattattttttcttt 15821548  T
Q  506 gagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaag 605  Q
    |||||||  ||||| || |||| |  |||  |||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  15821547 gagatcggaagttggtgcctagctacaatcctgtttggcttgatatggtgttctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaag 15821448  T
Q  606 tttggtgggccgatcacttttgattcgagatcg 638  Q
    | |||||||| ||||||||||||||||||||||    
T  15821447 tctggtgggctgatcacttttgattcgagatcg 15821415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 297 - 638
Target Start/End: Original strand, 36630543 - 36630882
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||| ||  ||| || ||  | |||||||||| | ||||||  |||||    
T  36630543 ctctgttacacgggtccttgttcgtcgtcactagctcttgtttgtgccttttgggtggtttaggagtctacggagtttggagggtgcgtgtccttttgtg 36630642  T
Q  397 tttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttat 496  Q
    || || |||||||||||||| |  |||||||  |  ||   ||||||  ||| || | ||||||||||||||||||| |||||| | ||  |||||||      
T  36630643 tt-gaaccttttccttgtgatttgtttgttggttaaact--tcgcatgccat-gtctttcgtcttacatattgtgtgttggttttcggtaggccggttca 36630738  T
Q  497 ttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatt 594  Q
    ||| |||||||||||| |||  || |||||| || ||| | ||||||||||||| || || |||| ||||||||||||||| |||||||||||||| |||    
T  36630739 tttggcttcgagatcgggagacgaggtctagctgcaatctttgtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatt 36630838  T
Q  595 tggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||| ||||||||||||||||||| |||||||||||    
T  36630839 tggttctaaagtctggtgggccgatcacttttaattcgagatcg 36630882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 237 - 638
Target Start/End: Complemental strand, 10248985 - 10248589
Alignment:
Q  237 tggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttg 336  Q
    ||||||| ||||||||||||||| ||| |||| ||||| ||| | ||| | ||||| || | ||||||||||||||| | ||||||||||||||||||||    
T  10248985 tggtgttgtttaggtgaggaggagggtgtttgctgggg-tgatttcttct-ggaggttgtcgctgttactcgggtccttattcgtcgtcactagctcttg 10248888  T
Q  337 tttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcacca 436  Q
    |||| || ||| || |||| ||||||||||  ||||||||||||||   ||||||||| | ||  || | |||||| ||| || |||||||| |||||||    
T  10248887 tttgagttttttggattgttaaggtgtttaaggtgtttggagggagcaggtcccgttgagcttagtc-tattccttttgattggtttgttgtttgcacca 10248789  T
Q  437 atcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaatta 536  Q
     |    |  | ||||   | ||||||| | ||||||| |||||||| ||| ||| |||| |||||||||||||||| |||| | ||||||| || ||||     
T  10248788 ctac--ttgccttgtcgtttgtcttactt-ttgtgtggtggtttccggtgggccagttacttttgcttcgagatcgggagtcggtgtctagctgcaattt 10248692  T
Q  537 tgtttgacttgatatgttgtt-ctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgaga 635  Q
    |||||| |||||| || |||| |||||||||||||||||  ||||||| ||| || |||| || ||||| |||||||| ||||||||||||||||| |||    
T  10248691 tgtttggcttgatttggtgtttctctggtgtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaaga 10248592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 308 - 638
Target Start/End: Complemental strand, 37987223 - 37986894
Alignment:
Q  308 gggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttt 407  Q
    |||| ||||||||||||||||||||||||||||||| ||| |||| ||  |||||||||  | ||| |||||| | ||||| |||||||||||| |||||    
T  37987223 gggtacatgttcgtcgtcactagctcttgtttgtgtttttcgggtggtttaggtgtttacggagttaggagggtgcgtgtcacgttgtgtttgagccttt 37987124  T
Q  408 tccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcga 507  Q
    || || ||| |  ||||||||    ||   ||||||  ||| || | |||||||||||||||||||||||||| | ||| |||||||  ||| |||||||    
T  37987123 tctttttgatttgtttgttgttcaaact--tcgcatgccat-gtctttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcga 37987027  T
Q  508 gatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaag 605  Q
    |||||  ||| |  ||||||||| | | | | ||||||||||| || || |||||||||||||||||||| |||||||||||||| |||||||  || ||    
T  37987026 gatcggtagtcggggtctagttgcattctttatttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatag 37986927  T
Q  606 tttggtgggccgatcacttttgattcgagatcg 638  Q
    | ||||||||| |||| ||||||||||||||||    
T  37986926 tctggtgggccaatcatttttgattcgagatcg 37986894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 449 - 638
Target Start/End: Complemental strand, 24995622 - 24995431
Alignment:
Q  449 tgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttg 547  Q
    ||||| |||||||||||||||||||||||||| | ||| |||||||  ||| |||||||||||| |||| |  |||||| || ||| | |||||||||||    
T  24995622 tgtttttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttg 24995523  T
Q  548 atatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || || || ||||||||||||| |||||| ||||||| | |||| ||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  24995522 atttggtttttctctggtgtactgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcg 24995431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 455 - 638
Target Start/End: Original strand, 9519359 - 9519544
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg- 552  Q
    |||||||||||||||||||||||||| ||||  |||||||  ||| |||||||||||| |||| |  |||||| || ||| | ||||||||||||| ||     
T  9519359 tcgtcttacatattgtgtgctggttttcagtaggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttgg 9519458  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || |||||||||||||||||||  |||||||||||||| ||||||| ||| ||| | |||||||||||| ||||||||||||||||    
T  9519459 tttttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcg 9519544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 455 - 638
Target Start/End: Complemental strand, 32066516 - 32066331
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg- 552  Q
    |||||||||||||||||||||||||| | ||| |||||||  ||| |||| ||||||| || | |  ||||||||| ||| | ||||||||||||| ||     
T  32066516 tcgtcttacatattgtgtgctggttttcggtgggccggttcatttggctttgagatcgggattcggggtctagttgcaatctttgtttgacttgatttgg 32066417  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || |||||| ||||||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||| ||||    
T  32066416 tttttctctagtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaatcg 32066331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 455 - 637
Target Start/End: Complemental strand, 34389226 - 34389042
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattat-gtttgacttgatatg- 552  Q
    |||||||||||||||||||||||||| |  |  |||||||  ||| |||||||||||| |||| |  |||||| || |||| | |||||||||||| ||     
T  34389226 tcgtcttacatattgtgtgctggttttcgataggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtttgacttgatttgg 34389127  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    || |||||||||||||| ||||| |||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  34389126 tttttctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatc 34389042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 30236246 - 30236164
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||||||| |||||||||||| ||||||||||| | |||| ||||||| ||||| |||||||||||||||||    
T  30236246 ttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcg 30236164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 31207479 - 31207398
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||| ||||| |||| ||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  31207479 ttctctggtgtaccaggggcgaggg-tgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcg 31207398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 10552232 - 10552313
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||| ||||||    
T  10552232 ttctctggtagaccaggggcaaggggtgccct-ctgatttggttctgaagtctggtgggccgatcgcttttgattctagatcg 10552313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 229 - 379
Target Start/End: Complemental strand, 17657447 - 17657298
Alignment:
Q  229 agggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcact 328  Q
    |||||||||| |||| ||||||||||||||  | | || ||||| ||||| |   |||||||||||| |||||||| |||||||| |||| || ||||||    
T  17657447 agggtggctgatgttgtttaggtgaggaggcggatgttcgttggaggtga-tttgttttggaggctgcctctgttattcgggtccttgtttgttgtcact 17657349  T
Q  329 agctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagg 379  Q
    ||||||||||||  | ||||||  ||| ||||||||||  |||||||||||    
T  17657348 agctcttgtttgcatttttgggactgttaaggtgtttatggtgtttggagg 17657298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 34389353 - 34389302
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttg 348  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  34389353 ctctgttacacgggtccatgttcgtcgtcactagctcttgtttgtgtttttg 34389302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 638
Target Start/End: Complemental strand, 17657209 - 17657038
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtg 565  Q
    ||||||| ||||||||  || |||||||| |||||||||||||||| |||| | || |||| |  |||  | |||| | |||| || |||| ||||| ||    
T  17657209 ttgtgtgttggtttccgatgggccggttaattttgcttcgagatcgggagtcggtggctagctacaatcttatttggcgtgatttggtgtttctctgatg 17657110  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||   | |||||||||| || | ||||  ||||||| ||||||| |||||||||||||||||||||||    
T  17657109 taccgggatga-ggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcg 17657038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 572 - 638
Target Start/End: Complemental strand, 16457562 - 16457497
Alignment:
Q  572 gggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| ||||||| |||||| ||||| | ||| |||||||||| ||||||||||||||||||||||||    
T  16457562 gggcgaggggtgtcctgctaatttgatactatagtttggtgg-ccgatcacttttgattcgagatcg 16457497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 632
Target Start/End: Complemental strand, 17720921 - 17720747
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt 557  Q
    |||||||| ||||||||||| |||  ||| |||| ||| |||||||| ||||||||||||||  || ||| || | |  |||||| || | |  ||  |     
T  17720921 tcttacattttgtgtgctggattctggtgggccgattacttttgctttgagatcgagagttggcgtatagctgcattcttgtttggctggctccgtgttc 17720822  T
Q  558 ctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcg 632  Q
    |||||||| ||| |||| ||||||||||   ||| |||||| ||||||| |||||||| |||| |||||||||||    
T  17720821 ctctggtggaccaggggtaaggggtgcctgtctggtttggtcctaaagtatggtgggctgatcgcttttgattcg 17720747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 32945821 - 32945739
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||| ||| ||||| || ||| ||||| || |||||||| |||| |||| | |||||| ||||||||||||||||||||||    
T  32945821 ttctctcgtggaccggaggtaagaggtgctcttctgatttgattctgaagtatagtgggctgatcacttttgattcgagatcg 32945739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 576 - 638
Target Start/End: Original strand, 35062440 - 35062502
Alignment:
Q  576 aaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||   ||||||||||||| |||| |||||||||||||  ||||||||||||||||    
T  35062440 aaggggtgcctctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcg 35062502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 32066670 - 32066625
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    |||||||||  |||| ||||||||||||||||||||||||||||||    
T  32066670 ctctgttacatgggtacatgttcgtcgtcactagctcttgtttgtg 32066625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 10249061 - 10248998
Alignment:
Q  18 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggccgtgggcttcagattctgcttgtt 81  Q
    |||||||||||| |||||| ||||||||||   ||||||  |||||||||||||| ||||||||    
T  10249061 gtaaggatcgtggtggttggggtttgttcgcaccggtggttgtgggcttcagattttgcttgtt 10248998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 638
Target Start/End: Original strand, 15906686 - 15906731
Alignment:
Q  593 tttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||| || |||| ||||||||||||||| |||||||||||||||    
T  15906686 tttggtcctgaagtctggtgggccgatcacatttgattcgagatcg 15906731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 637
Target Start/End: Original strand, 33967341 - 33967370
Alignment:
Q  608 tggtgggccgatcacttttgattcgagatc 637  Q
    ||||||||||||||||||||||||||||||    
T  33967341 tggtgggccgatcacttttgattcgagatc 33967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 34866414 - 34866370
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgt 341  Q
    ||||||||| ||||| |||||||||||||| ||||||||| ||||    
T  34866414 ctctgttacacgggttcatgttcgtcgtcaatagctcttggttgt 34866370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 7e-63; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 270 - 638
Target Start/End: Original strand, 34389642 - 34390007
Alignment:
Q  270 tgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctt-tggggttgtcaaggtgtttaga 368  Q
    ||||||||| ||||||| |||| ||| ||||||| ||||||||  |||||||||||||||||||| |||| | | || | ||||||| |||||||||||     
T  34389642 tgggggtgattcctttt-ggag-ctgactctgttgctcgggtcattgttcgtcgtcactagctctcgttttttttttgttgggttgttaaggtgtttagg 34389739  T
Q  369 gtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatatt 468  Q
     ||||||||||| | |||| | |||| | | |  |||||||||| | | |   ||||||| ||||||||||||||||||| || ||||||| ||||||||    
T  34389740 ttgtttggagggtgcgtgttc-gttgcgatggg-ccttttccttttcatttgcttgttgtttgcaccaatcgcatatcat-gtctatcgtcgtacatatt 34389836  T
Q  469 gtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgttt-gacttgatatgttgttctctggtgta 567  Q
    |||||||||| ||   || ||| ||||||||||||||||||||   ||||| |||||||||| ||| |||||| ||||||||||| ||||||||||||||    
T  34389837 gtgtgctggtgtctgatgggccagttatttttgcttcgagatcagaagttggtgtctagttgcaatcatgttttgacttgatatggtgttctctggtgta 34389936  T
Q  568 ccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    | |||||  ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  34389937 ctgggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcg 34390007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 297 - 638
Target Start/End: Complemental strand, 3420032 - 3419692
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||  ||| |||| ||  |||||||||  | |||||||||| | ||||| |||| ||    
T  3420032 ctctgttacacgggtccatgttcgttgtcactagctcttgtttgtgctttttgggtggtttaggtgtttacggagtttggagggtgcgtgtcacgtt-tg 3419934  T
Q  397 t-ttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggtta 495  Q
    | |||| || ||||||| ||| |  |||||||| |  ||   || |||  ||| || | |||||||||||||||||||||||||| | | |||||||||     
T  3419933 tgttgagccctttccttttgatttgtttgttgtttaaact--tcacatgccat-gtctttcgtcttacatattgtgtgctggttttcggcgagccggttc 3419837  T
Q  496 tttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgat 593  Q
     ||| |||||||||||| |||| |  |||||| || ||| | ||||||||||||| || || ||||||||| |||||||||| |||||||||||| | ||    
T  3419836 atttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtataccgggggcgaggggtgccctgttaat 3419737  T
Q  594 ttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||    
T  3419736 ttggtactaaagtgtggtgggctgatcacttttgattcgagatcg 3419692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 297 - 636
Target Start/End: Original strand, 38305967 - 38306304
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||  ||| |||| ||  || ||||||  | |||||||||| |  ||   |||||||    
T  38305967 ctctgttacacgggtccatgttcatcgtcactagctcttggttgtgctttttgggtggtttagatgtttacggagtttggagggtgcttgcaacgttgtg 38306066  T
Q  397 tttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttat 496  Q
    || || |||||||||| ||| |  |||||||| |  ||   ||||||  ||| || | || ||||||||||||||||||||||| | ||| |||||||      
T  38306067 tt-gagccttttccttttgatttgtttgttgtttaaact--tcgcatgccat-gtctttcatcttacatattgtgtgctggttttcggtgggccggttca 38306162  T
Q  497 ttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatt 594  Q
    ||| ||||||||| || |||| |  |||||| || ||| | ||||||||||||| || || ||||||||||||| |||||| |||||||||||||| |||    
T  38306163 tttggcttcgagaacgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtacagggggcgaggggtgccctgctaatt 38306262  T
Q  595 tggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    |||| ||| ||| |||||||||||||||||||||||||||||    
T  38306263 tggtactatagtctggtgggccgatcacttttgattcgagat 38306304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 166 - 638
Target Start/End: Complemental strand, 42533753 - 42533288
Alignment:
Q  166 gttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtat 265  Q
    |||||||||  ||||||||||||| ||||||||||||||||| ||| | ||||| | |||||| || | || |||||||   | ||| || ||| ||| |    
T  42533753 gttgtggttgttttggactcggat-tggtgtcggaacggttt-gcggacgggagctatataaggggctagcgggtgttt---acgtgcggtggatggtgt 42533659  T
Q  266 ttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgttt 365  Q
    ||||| | ||||| | ||||| |||||  |  ||||||||||||||||||||||||||||| | |||||||||||||  ||| ||||||| |||||||||    
T  42533658 ttgttagaggtgatttctttt-ggaggtagcatctgttactcgggtccatgttcgtcgtcattggctcttgtttgtgatttttgggttgttaaggtgttt 42533560  T
Q  366 agagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtga-ctgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttaca 464  Q
    |  ||| ||||||| || |||||||||||| | ||| |||||||||| |||  || || ||||| |||||| | || || || ||||   | ||| |||     
T  42533559 aaggtggttggaggaagcgtgtcccgttgt-tctgagccttttccttttgatttgtttggttgtttgcacc-accgtatctc-ttgtcgtttgtcatact 42533463  T
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttg-ttctctgg 563  Q
    | |||||||||||| |||  || |||||||| |||||||||||||||| ||||   |||| || || | |  | |||| |  ||| || || ||||||||    
T  42533462 ttttgtgtgctggtctccgatgggccggttacttttgcttcgagatcgggagtctgtgtccagctgcattcttatttggcgcgatgtggtgtttctctgg 42533363  T
Q  564 tgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || | ||||||  ||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  42533362 tgcatcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcg 42533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 297 - 638
Target Start/End: Original strand, 33434814 - 33435154
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgttt-gtg-tctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttg 394  Q
    |||||||||||||||| |||||||||||||||||||| ||||| ||| | ||| |||| ||  |||| ||||| |||||||||||||| | |||||||||    
T  33434814 ctctgttactcgggtctatgttcgtcgtcactagctcctgttttgtgcttttttgggtggtttaggtatttagggtgtttggagggagcgggtcccgttg 33434913  T
Q  395 tgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggtt 494  Q
    |||  || ||||||||||  ||  | || ||||| |  ||   | ||||  ||| ||   |||| |||||||||||||| |||||||| ||| |||| ||    
T  33434914 tgtc-gagccttttcctttcgataggttggttgtttaaact--ttgcatgccat-gtcattcgtattacatattgtgtgttggtttccggtgggccgatt 33435009  T
Q  495 atttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatgttgttctctggtgtaccgggggcaaggggtgccctgctgat 593  Q
    | ||||||||||||||||  |||    ||||||||| ||| | |||||  |||||| || | |||||||||||||||||||| |||||||||||| | ||    
T  33435010 acttttgcttcgagatcggtagtccgggtctagttgtaatctttgtttagcttgatttggttttctctggtgtaccgggggcgaggggtgccctgttaat 33435109  T
Q  594 ttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| ||||||| ||||| | |||||||||||||||||||||||    
T  33435110 ttggtactaaagtctggtgagacgatcacttttgattcgagatcg 33435154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 489 - 638
Target Start/End: Complemental strand, 35746012 - 35745863
Alignment:
Q  489 ccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctggtgtaccgggggcaaggggtgccctg 588  Q
    ||||||| ||||||||||||||||  ||||| || ||||  | |||  |||||||||||||||| ||||||||| |||||||||||| |||||||||||     
T  35746012 ccggttacttttgcttcgagatcggaagttggtgactagcagcaatcttgtttgacttgatatggtgttctctgatgtaccgggggcgaggggtgcccta 35745913  T
Q  589 ctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || |||| |||||||||| || ||||| ||||||||||||||||||||||    
T  35745912 ctaattttgttctaaagtctgatgggctgatcacttttgattcgagatcg 35745863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 300 - 638
Target Start/End: Complemental strand, 47326257 - 47325921
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| |||||||||||||||||| |||||||||||||||||  ||| |||| ||  |||| ||||  | |||||||||| | ||||| |||||||||     
T  47326257 tgttacacgggtccatgttcgtcgttactagctcttgtttgtgctttttgggtggtttaggtatttacggagtttggagggtgcgtgtcacgttgtgtt- 47326159  T
Q  400 gatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttt 499  Q
    || |||||||||| ||| |  ||||||||    ||   ||||||  ||| || | || ||||||||||||||||||||||| |  || |||||||  |||    
T  47326158 gagccttttccttttgatttgtttgttgttcaaact--tcgcatgccat-gtctttcttcttacatattgtgtgctggttttcgatgggccggttcattt 47326062  T
Q  500 tgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttgg 597  Q
     |||||||||||| |||| |  ||||||  | ||| | ||||| ||||||| || || |||||||||||||||||||| ||||||||| |||| ||||||    
T  47326061 ggcttcgagatcgggagtcggggtctagcagcaatctttgtttaacttgatttggtttttctctggtgtaccgggggcgaggggtgccttgctaatttgg 47325962  T
Q  598 ttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    | ||| ||| ||||||||||||| ||||||||| |||||||    
T  47325961 tactatagtctggtgggccgatcgcttttgatttgagatcg 47325921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 265 - 638
Target Start/End: Original strand, 8744828 - 8745198
Alignment:
Q  265 tttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtt 364  Q
    |||||||||||||| ||  ||||||||| |  || |||||||||| ||| ||||||||||||||||| |||||||| || |||  |||||| ||||||||    
T  8744828 tttgttgggggtga-tctcttttggaggtttcctttgttactcggttccttgttcgtcgtcactagcccttgtttgcgttttttcggttgttaaggtgtt 8744926  T
Q  365 tagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttaca 464  Q
    ||   |||||||||| || | |||  |||| ||| || |||| ||||| |||   ||||||||| |||||||  |||||||||| ||   | ||| | |     
T  8744927 tacgatgtttggaggaagcgagtcttgttgagtt-gagccttctccttttgatctatttgttgtttgcaccac-cgcatatcat-gtcgtttgtcatgct 8745023  T
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctgg 563  Q
    | |||||||||||||| | ||| |||||||| ||||||||||||||||  ||  | ||||||| || |||  ||||||   |||| || |||| ||||||    
T  8745024 ttttgtgtgctggttttcggtgggccggttacttttgcttcgagatcggaaggcggtgtctagctgcaatgttgtttggtgtgatctggtgtttctctgg 8745123  T
Q  564 tgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || |||| |||  ||||||| ||| |||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  8745124 tgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcg 8745198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 455 - 635
Target Start/End: Original strand, 3866977 - 3867158
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg- 552  Q
    |||||||||||||||||| ||||||||  ||| | || ||| ||||||||||||||||||||| |  |||||| |  ||| | ||||||||||||||||     
T  3866977 tcgtcttacatattgtgtcctggtttcg-gtgggtcgattacttttgcttcgagatcgagagtcggggtctagctacaatctttgtttgacttgatatgg 3867075  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgaga 635  Q
    || ||||||||||||||| |||| | ||||| |||||| ||||||| ||||| | |||||||| |||||||||||||||||||    
T  3867076 tttttctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgggctgatcacttttgattcgaga 3867158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 561 - 638
Target Start/End: Original strand, 6584877 - 6584954
Alignment:
Q  561 tggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6584877 tggtgtaccggaggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcg 6584954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 300 - 638
Target Start/End: Original strand, 25160525 - 25160860
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| ||||||||||||||||||||||||||||||||||||  ||| || | ||  ||||||||| || ||||||||||   ||||| ||||||  ||    
T  25160525 tgttacacgggtccatgttcgtcgtcactagctcttgtttgtgctttttggatggtttaggtgtttacagagtttggagggtcggtgtcacgttgt--tt 25160622  T
Q  400 gatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttt 499  Q
    || ||| |||||| ||| |  |||||||| |  || |  |||||  ||| || | | |||||||||||||||| ||||||| | ||| |  | ||  |||    
T  25160623 gaacctattccttttgatttgtttgttgtttaaacta--cgcatgccat-gtcttttgtcttacatattgtgtactggttttcggtgggatgattcattt 25160719  T
Q  500 tgcttcgagatcgagagttgatgtctagttggaattat-gtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttgg 597  Q
     |||| | ||||| |||| |  |||||||||  ||| | |||||||||| | || || ||||||||||||||| |||| |||||||||||||| ||||||    
T  25160720 ggctttgggatcgggagtcggggtctagttgctatttttgtttgacttggtttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttgg 25160819  T
Q  598 ttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| ||| |||||| ||||| ||||||||||||||||||    
T  25160820 ttctatagtctggtggaccgattacttttgattcgagatcg 25160860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 455 - 638
Target Start/End: Original strand, 10244043 - 10244227
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg- 552  Q
    |||||||||||||||||||||||||| | ||  || ||||  ||| |||||||||||| |||| |   |||||||| ||| | ||||||| | ||| ||     
T  10244043 tcgtcttacatattgtgtgctggttttcggttggctggttcatttggcttcgagatcgggagtcgggatctagttgcaatctttgtttga-tagatttgg 10244141  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || |||||||||||||||||||  |||||||||||||| ||||||| ||| | | |||||||||||||||||||||||||||||||    
T  10244142 tttttctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcg 10244227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 177 - 638
Target Start/End: Original strand, 16954242 - 16954698
Alignment:
Q  177 tttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggt 276  Q
    ||||||||||||| ||||||||| ||||||| | | ||  ||| ||||| || || |||  |||||| |||| ||||||||||  || ||||||||||||    
T  16954242 tttggactcggatttggtgtcgggacggttt-gtggagttgagctttattaggggttggtgggtgttgtttatgtgaggaggagagtgtttgttgggggt 16954340  T
Q  277 gactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttgg 376  Q
    || | | | | |||||| | || |||||||||||| | |||| |||||||||| |||| |||||  | ||| |  |||| ||||||||||| || |||||    
T  16954341 gatttcgtct-ggaggcagtctttgttactcgggtacttgtttgtcgtcactatctctagtttgcatttttcga-ttgttaaggtgtttagggtttttgg 16954438  T
Q  377 agggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctg 476  Q
    ||| || | ||| ||||| ||| || ||||||||||  ||    |||||||| ||||||| | ||||||| ||||   | ||| ||| || |||||||||    
T  16954439 aggtagcgggtctcgttgagtt-gagccttttcctttggatatgtttgttgtttgcaccact-gcatatc-ttgtcgtttgtcatacttactgtgtgctg 16954535  T
Q  477 gtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtgtaccgggggc 575  Q
    ||||||  || |||| ||| ||||||||| ||||||||||||| ||||||| || |||  || ||| |  ||| || | || |||||||||| | | ||     
T  16954536 gtttccgatgggccgattacttttgcttccagatcgagagttggtgtctagctgcaatcttggttggcgcgatttggtctttctctggtgtatcagaggt 16954635  T
Q  576 aaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     ||||||||||| |||||||||| ||||||| |||| | ||||||||||||| ||||||||||    
T  16954636 gaggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcg 16954698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 537 - 636
Target Start/End: Complemental strand, 41089886 - 41089786
Alignment:
Q  537 tgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgaga 635  Q
    ||||||||||||| || || |||||||||||| ||||||| |||||||| ||||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  41089886 tgtttgacttgatttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaaagtctggtggaccgatcacttttgattcgaga 41089787  T
Q  636 t 636  Q
    |    
T  41089786 t 41089786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 455 - 638
Target Start/End: Complemental strand, 5860509 - 5860324
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg- 552  Q
    |||||||||||||||||||||||||| |  || |||||||  ||| |||||||||||| |||| || |||||  || ||| | |||||| ||  || ||     
T  5860509 tcgtcttacatattgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcgaggtctatctgcaatctttgtttggctgaatttgg 5860410  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || ||||||  |||||||||||| |||||||||||||| ||||||| ||| |||  |||||||| ||| |||||||||||||||||    
T  5860409 tttttctctactgtaccgggggcgaggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcg 5860324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 460 - 638
Target Start/End: Original strand, 37794865 - 37795034
Alignment:
Q  460 ttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatgttgttc 558  Q
    ||||||||||||||||||||| | ||| |||||||  ||| |||||||||||| ||||||  |||||| || ||| | ||||||||||||| ||          
T  37794865 ttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagttggggtctagctgcaatctttgtttgacttgatttg------ 37794958  T
Q  559 tctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
        ||||||||||||| |||||||||||||| |||||||  || ||| |||||||||| ||| ||||||||||||||||    
T  37794959 ----gtgtaccgggggcgaggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcg 37795034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 24324916 - 24324834
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| |||||||||||||   ||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  24324916 ttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcg 24324834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 38485519 - 38485601
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| || ||||| |||||||||||| |||| || ||||| |||| |||||||||||||||||||||||||||||||    
T  38485519 ttctctggtggactgggggtaaggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcg 38485601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 577 - 638
Target Start/End: Original strand, 3478336 - 3478397
Alignment:
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  3478336 aggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcg 3478397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 496 - 631
Target Start/End: Original strand, 1320696 - 1320832
Alignment:
Q  496 tttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtgtaccgggggcaaggggtgccctgctgatt 594  Q
    ||||||||||||||||| |||||| ||||||| || |||| |||||| |   || || |||| ||||| |||| ||||||  |||||||||||  |||||    
T  1320696 tttttgcttcgagatcgggagttggtgtctagctgtaattttgtttggcgcaatttggtgtttctctgatgtatcgggggtgaggggtgcccttttgatt 1320795  T
Q  595 tggttctaaagtttggtgggccgatcacttttgattc 631  Q
    ||||  |||||| ||||||||||||||||||||||||    
T  1320796 tggtcataaagtctggtgggccgatcacttttgattc 1320832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 630
Target Start/End: Original strand, 44755500 - 44755663
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtg 565  Q
    |||||||||||||  | ||| |||  ||| |||||||| ||| ||| |||| | ||||||| ||  ||| |||||||| |||| || |||| ||||||||    
T  44755500 ttgtgtgctggttagcggtgggcccattaattttgctttgaggtcgggagtcggtgtctagctgctattttgtttgacgtgatttggtgtttctctggtg 44755599  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgatt 630  Q
    ||||| ||  | |||||||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  44755600 taccgtggtga-ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 457 - 638
Target Start/End: Complemental strand, 6716954 - 6716772
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgt 556  Q
    ||||||| | ||| |||||||||| | ||| ||| |||| |||| ||| ||||||| |||| | ||||||| || |||  | |||| |||||| || |||    
T  6716954 gtcttactttttgcgtgctggttttcggtgggccagttacttttactttgagatcgggagtcggtgtctagctgcaatcttatttggcttgatttgatgt 6716855  T
Q  557 t-ctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    | ||||||||||||| | |  ||||||||||| |||||||  |  |||||| |||| ||||||||||||||||||||||||||    
T  6716854 ttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcg 6716772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 465 - 638
Target Start/End: Complemental strand, 16829146 - 16828972
Alignment:
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctgg 563  Q
    ||||||||||||||||||  || | || ||| ||||||||| |||| |||||||| ||||||  || |||  || ||| |  ||| || |||| |||| |    
T  16829146 tattgtgtgctggtttccgatgggtcgattacttttgcttccagattgagagttggtgtctacctgcaatcttggttggcgcgatttggtgtttctctag 16829047  T
Q  564 tgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| | ||||  ||||||||||| |||||||||| ||||||| |||| ||| ||||||||||| ||||||||||    
T  16829046 tgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcg 16828972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 230 - 340
Target Start/End: Original strand, 6584702 - 6584810
Alignment:
Q  230 gggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcacta 329  Q
    |||||| ||||||| |||||||||||||| |||| |||||||||| ||| | ||||| ||||   | |||| |||| |||||||||| |||||||| |||    
T  6584702 gggtggttggtgttatttaggtgaggaggcaggtgtttgttgggg-tgatttctttt-ggagatagcctctattacacgggtccatgatcgtcgtcgcta 6584799  T
Q  330 gctcttgtttg 340  Q
    |||||||||||    
T  6584800 gctcttgtttg 6584810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 13311802 - 13311884
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||||||  |||||||||||  ||| ||||||  |  ||| |||||||||||||||||||||||||||||||    
T  13311802 ttctctggtggaccggggataaggggtgcccgtctggtttggtcatgtagtctggtgggccgatcacttttgattcgagatcg 13311884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 6717103 - 6717019
Alignment:
Q  302 ttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttg--gggttgtcaaggtgtttagagtgtttggagggagtg 384  Q
    |||||||||||  ||||||||||||||||||||||||| | | |||   ||||| | ||||||||||| ||||||||||||||||    
T  6717103 ttactcgggtctttgttcgtcgtcactagctcttgttttttttttttttgggtttttaaggtgtttagggtgtttggagggagtg 6717019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 10243893 - 10243938
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  10243893 ctctgttacacgggtacatgttcgtcgtcactagctcttgtttgtg 10243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 37794719 - 37794798
Alignment:
Q  309 ggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtc 388  Q
    ||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||  | ||||| |||| |||||||    
T  37794719 ggtccatgttcgtcgtcactagctcttgtttgtgctttttgggtggtttaggtgtttacggagtttgaagggtgtgtgtc 37794798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 1320455 - 1320544
Alignment:
Q  251 tgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatg-ttcgtcgtcactagctcttgtttg 340  Q
    ||||||||||||| |||||||||||||| | | |||| ||||| | || | |||| ||||||| || ||||||||||||||||||||||||    
T  1320455 tgaggaggaaggtgtttgttgggggtgatttc-ttttagaggcagcctattttacacgggtccttgtttcgtcgtcactagctcttgtttg 1320544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 12480873 - 12480931
Alignment:
Q  580 ggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| ||| ||||||| || || |||||||||||||||||| |||||||||||||||||    
T  12480873 ggtggccttctgattttgtcctgaagtttggtgggccgatcgcttttgattcgagatcg 12480931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 601 - 638
Target Start/End: Original strand, 9349757 - 9349794
Alignment:
Q  601 taaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9349757 taaagtctggtgggccgatcacttttgattcgagatcg 9349794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 638
Target Start/End: Complemental strand, 11379335 - 11379163
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttg-ttctctggtg 565  Q
    ||||||||||| ||| |||| | |||||||||||| ||| |||||| |||||| ||||||| |  |||  |||||| ||   || | || ||||||||||    
T  11379335 ttgtgtgctggattctagtgggtcggttatttttgattcaagatcgggagttggtgtctagctacaatcttgtttggctgactacggtgtttctctggtg 11379236  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     |||| |||   |||||||||| || |||||||  |  ||| ||||| ||||||| |||||||||||||||||    
T  11379235 gaccgagggtttggggtgcccttctaatttggtcatgtagtctggtgagccgatcgcttttgattcgagatcg 11379163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 389
Target Start/End: Original strand, 9106861 - 9106964
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagt 383  Q
    |||| ||||| | |||||||| || ||||||| ||||||||| |||||||||||||| || || |||  ||| ||||||||||| ||| || ||||| |     
T  9106861 ttttagaggccgcctctgttattcaggtccattttcgtcgtcgctagctcttgtttgagttttaggg--tgttaaggtgtttagggtgctttgagggtgg 9106958  T
Q  384 gtgtcc 389  Q
    ||||||    
T  9106959 gtgtcc 9106964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 638
Target Start/End: Complemental strand, 17802882 - 17802852
Alignment:
Q  608 tggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||||||||||||||||    
T  17802882 tggtgggccgatcacttttgattcgagatcg 17802852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 638
Target Start/End: Complemental strand, 46262185 - 46262155
Alignment:
Q  608 tggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||||||||||||||||    
T  46262185 tggtgggccgatcacttttgattcgagatcg 46262155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 47457140 - 47457060
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    |||||||||| | |||||| |||||||||||  |||||| ||| || |||| || ||| |||||| ||||||||| |||||    
T  47457140 ttctctggtggatcgggggtaaggggtgcccgtctgattaggtcctgaagtctgatggaccgatcgcttttgatttgagat 47457060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 7e-63; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 453 - 638
Target Start/End: Complemental strand, 23328569 - 23328386
Alignment:
Q  453 tatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatg 552  Q
    |||||||||||||||||||||||||| |||  || |||||||  |||||||||||||||| |||||| ||||||| || |||| ||||||||||||||||    
T  23328569 tatcgtcttacatattgtgtgctggtgtccgatgggccggtt--ttttgcttcgagatcgggagttggtgtctagctgcaattttgtttgacttgatatg 23328472  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23328471 gtgttctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcg 23328386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 270 - 638
Target Start/End: Complemental strand, 40023967 - 40023608
Alignment:
Q  270 tgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagag 369  Q
    ||||||||| ||||||| |||| ||| ||||||| ||||||||| |||||||| ||||||||||| |||| | | ||  ||||||| ||||||||||  |    
T  40023967 tgggggtgattcctttt-ggag-ctgactctgttgctcgggtccttgttcgtcctcactagctctcgtttttttgtt--gggttgttaaggtgtttaagg 40023872  T
Q  370 tgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattg 469  Q
    ||||||||||| | |||||| |||||| | || |||||||||| |   |   ||||||| ||||||||||||| ||||| || |||||||||||||||||    
T  40023871 tgtttggagggtgcgtgtcc-gttgtgat-gagccttttccttttt--ttgcttgttgtttgcaccaatcgcacatcat-gtctatcgtcttacatattg 40023777  T
Q  470 tgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgttt-gacttgatatgttgttctctggtgtac 568  Q
    |||  |||| ||| |||  ||||||||||||||||||||||||  ||||| ||||||| || ||| |||||| ||||||||||| |||||||| ||||||    
T  40023776 tgtattggtgtccggtggaccggttatttttgcttcgagatcggaagttggtgtctagctgcaatcatgttttgacttgatatggtgttctctagtgtac 40023677  T
Q  569 cgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||| |||| |||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||    
T  40023676 cgggggcgaggg-tgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcg 40023608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 300 - 638
Target Start/End: Original strand, 25647391 - 25647729
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtt 398  Q
    |||||||||||||| |||||||||||||||||||||||| ||| | |||  |||||| ||||||||||| ||||||||||| || | ||||||||| |||    
T  25647391 tgttactcgggtccttgttcgtcgtcactagctcttgttcgtgatttttaaggttgttaaggtgtttagggtgtttggaggaagcgagtcccgttgagtt 25647490  T
Q  399 tgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcatt--gtttatcgt-cttacatattgtgtgctggtttccagtgagccggtta 495  Q
     |  |||||||||| ||||   |||||||| ||||||| | | |||||||   |||| || | |||   | ||||||| ||||||||  || ||||||||    
T  25647491 -gtgccttttccttttgacctgtttgttgtttgcaccact-gtatatcatgtcgtttgtcattctt---ttttgtgtgttggtttccgatgggccggtta 25647585  T
Q  496 tttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtgtaccgggggcaaggggtgccctgctgatt 594  Q
     ||||||||||||| || |||| | ||||||| || |||| |||||| | |||| || |||| ||||||||||||||| |  | ||||||||| ||||||    
T  25647586 cttttgcttcgagaacgggagtcggtgtctagctgcaattctgtttggcgtgatttggtgtttctctggtgtaccgggagtgaagggtgcccttctgatt 25647685  T
Q  595 tggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| ||||||| ||  ||||| |||||||||||||||||||||    
T  25647686 tggtcctaaagtctgacgggcctatcacttttgattcgagatcg 25647729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 300 - 638
Target Start/End: Complemental strand, 34476125 - 34475790
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| ||||||||||||||||||| ||||||||||||||||  ||| | || ||  |||||||||  | |||||||||| | ||||| ||||||  ||    
T  34476125 tgttacacgggtccatgttcgtcgtctctagctcttgtttgtgctttttgagtggtttaggtgtttacggagtttggagggtgggtgtcacgttgt--tt 34476028  T
Q  400 gatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttt 499  Q
    || ||||||||||  || |  |||||||| |  ||   ||||||  | |||| | | ||||||||||| |||||||||||| |  || |||| ||  |||    
T  34476027 gagccttttcctttggatttgtttgttgtttaaact--tcgcatgcc-ttgtcttttgtcttacatatcgtgtgctggttttcgatgggccgattcattt 34475931  T
Q  500 tgcttcgagatcgagagttgatgtctagttggaattat-gtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttgg 597  Q
     |||||||||||| |||| |  |||||| || |||| | |||||||||| | || || |||||||||||||||||||| |||||||||||||| |||||     
T  34475930 ggcttcgagatcgggagtcggggtctagctgcaatttttgtttgacttggtttgatttttctctggtgtaccgggggcgaggggtgccctgctaatttgt 34475831  T
Q  598 ttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  34475830 ttctatagtctggtgggccgatcacttttgattcgagatcg 34475790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 297 - 638
Target Start/End: Original strand, 20611489 - 20611828
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    ||||||||| |||||||||||| ||||| |||||||||||||||||  ||| |||| ||  |||||||||    |||||||||| | ||||| |||||||    
T  20611489 ctctgttacacgggtccatgtttgtcgttactagctcttgtttgtgctttttgggtagtttaggtgtttacgaagtttggagggtgcgtgtcacgttgtg 20611588  T
Q  397 tttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttat 496  Q
    || || |||||||||| ||| |  ||| ||||    ||   ||||||   || |||| |||||||||||||||||||||||||| | ||| | |||||      
T  20611589 tt-gagccttttccttttgatttgtttattgttcaaact--tcgcatgctat-gtttttcgtcttacatattgtgtgctggttttcggtgggtcggttca 20611684  T
Q  497 ttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatt 594  Q
    ||| | |||||||||  |||| |  |||||| || ||| | ||||||||||||| || || |||||||||||||||||||| |||||||||||||| |||    
T  20611685 tttggtttcgagatcaggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatt 20611784  T
Q  595 tggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    | || ||| |||||| ||||||||||| ||||||||||||||||    
T  20611785 tcgtactatagtttgttgggccgatcatttttgattcgagatcg 20611828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 237 - 636
Target Start/End: Original strand, 37123037 - 37123425
Alignment:
Q  237 tggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttg 336  Q
    ||||||| |||||||||||||| |||| ||||||| |||||| | ||||  |||||| | ||||| ||||||||||| ||||||||||||||||||||||    
T  37123037 tggtgttgtttaggtgaggaggcaggtgtttgttgagggtgatttctttc-ggaggcggcctctggtactcgggtccttgttcgtcgtcactagctcttg 37123135  T
Q  337 tttgtg-tctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtga-ctgatttgttgtctgcac 434  Q
    |||||| | ||||||||||| |||| |||||| ||||||||||| || | || || ||| | ||||  ||||||||| ||| |||  | ||||| |||||    
T  37123136 tttgtgttttttggggttgttaaggagtttagggtgtttggaggaagcgggttccattgag-ttgagtcttttccttttgatctg-ctggttgtttgcac 37123233  T
Q  435 caatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat 534  Q
    |  ||||| |||||   |  | ||| ||| | ||||||||||||||         || ||| |||||||||||||||| |||| | ||||||| || |||    
T  37123234 c-ttcgcacatcatgcat--ttgtcatactttttgtgtgctggttt--------tcgattacttttgcttcgagatcgggagtcggtgtctagctgcaat 37123322  T
Q  535 tatgtttgacttgatatgttg-ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcga 633  Q
    | |||||| | |||| || || ||||||| |||||||  ||  |||||||||||  || |||||| ||||| ||||||||||||||||||||||||||||    
T  37123323 tttgtttggcgtgatttggtgtttctctgatgtaccgaaggagaggggtgcccttatgttttggtcctaaattttggtgggccgatcacttttgattcga 37123422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 300 - 638
Target Start/End: Original strand, 19176212 - 19176547
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| ||||||  ||||| |||||||||||||||||||||| |||| || | ||  |||||||||  | |||||||||||||||||||| ||||||      
T  19176212 tgttacacgggtctttgttcatcgtcactagctcttgtttgtgccttttggatggtttaggtgtttacggagtttggagggagtgtgtccctttgtgtg- 19176310  T
Q  400 gatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttt 499  Q
    || | |||||||||||| |  |||||||  |  ||   || |||  ||| || | || |||||| |||||||||||||||| | ||| || ||||  |||    
T  19176311 gagctttttccttgtgatttgtttgttggttaaact--tcacatgccat-gtctttcctcttacttattgtgtgctggttttcggtgggctggttccttt 19176407  T
Q  500 tgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttgg 597  Q
     |||||||||||  |||| |  |||||| || ||| | |||||||||| || || || ||||||| ||||||||| |  |||| ||||||||| ||||||    
T  19176408 ggcttcgagatcaggagtcggggtctagctgcaatctttgtttgacttaatttggtttttctctgatgtaccgggagtgaggg-tgccctgctaatttgg 19176506  T
Q  598 ttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  19176507 ttctaaagtctggtgggccgatcacttttgattcgagatcg 19176547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 455 - 636
Target Start/End: Complemental strand, 2392727 - 2392544
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatgt 553  Q
    |||||||||||||||||||||||||| |  || | |||||  ||| ||||| |||||| |||| |  |||||| || ||| | ||||||||||| | ||     
T  2392727 tcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagatcgggagtcggggtctagctgcaatctttgtttgacttggtttgg 2392628  T
Q  554 tgtt-ctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    | || |||||||||||||||||| |||||||||||||| ||||||| ||| ||  |||||| ||||||||||||||||||||||    
T  2392627 ttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagat 2392544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 455 - 636
Target Start/End: Complemental strand, 2394474 - 2394291
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatgt 553  Q
    |||||||||||||||||||||||||| |  || | |||||  ||| ||||| |||||| |||| |  |||||| || ||| | ||||||||||| | ||     
T  2394474 tcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagatcgggagtcggggtctagctgcaatctttgtttgacttggtttgg 2394375  T
Q  554 tgtt-ctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    | || |||||||||||||||||| |||||||||||||| ||||||| ||| ||  |||||| ||||||||||||||||||||||    
T  2394374 ttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagat 2394291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 177 - 379
Target Start/End: Complemental strand, 4464430 - 4464229
Alignment:
Q  177 tttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggt 276  Q
    |||||||||| ||||||||||||| ||||||  || | || ||  |||||||||||||||||||||| |||||||||| |||  ||| |||| ||||| |    
T  4464430 tttggactcgaatctggtgtcggagcggttta-cggacggaagcgttataagagggtggctggtgttgtttaggtgagtaggcgggtgtttgatgggg-t 4464333  T
Q  277 gactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttggggttgtcaaggtgtttagagtgtttg 375  Q
    || | |||||| ||||||| |||||||| | | |||| |||| ||||||||||||| ||||||| | | |||||||||||  |||||||||  | |||||    
T  4464332 gatttctttttagaggctgactctgttaatggagtccttgtttgtcgtcactagcttttgtttgcgttttttggggttgtttaggtgtttatggagtttg 4464233  T
Q  376 gagg 379  Q
    ||||    
T  4464232 gagg 4464229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 30935508 - 30935426
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||||||| |||||||||||| ||||||||||| | ||||||||||||| |||| |||||||||| ||||||    
T  30935508 ttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtttggtgggctgatcgcttttgattcaagatcg 30935426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 638
Target Start/End: Complemental strand, 823621 - 823471
Alignment:
Q  489 ccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtgtaccgggggcaaggggtgccct 587  Q
    ||||||| ||||||||| |||||  |||||| |||||||||| |||  |||||| |||| |||| |||| |||||||| |||| ||| || |||||||||    
T  823621 ccggttaattttgcttcaagatcaggagttggtgtctagttgcaatcttgtttggcttgttatggtgtttctctggtggaccgtgggtaaagggtgccct 823522  T
Q  588 gctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     |  |||||||| | |||  |  ||||||||||||||||||||||||||||    
T  823521 tcaaatttggttatgaagactaatgggccgatcacttttgattcgagatcg 823471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 554 - 636
Target Start/End: Original strand, 14193901 - 14193983
Alignment:
Q  554 tgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    |||||| |||||||||||| |  ||||||||||| |||||||||| ||||||| ||| || ||||||||||||||||||||||    
T  14193901 tgttctttggtgtaccgggagtgaggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagat 14193983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 577 - 638
Target Start/End: Original strand, 45398780 - 45398841
Alignment:
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||    
T  45398780 aggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcg 45398841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 597
Target Start/End: Original strand, 47235424 - 47235720
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtt 398  Q
    |||||| ||||||||||||| ||||| |||||||||||||||| | ||| |||| ||  |||||||||  | |||||||||| | ||||| ||||||| |    
T  47235424 tgttacacgggtccatgttcatcgtctctagctcttgtttgtgtttttttgggtggtttaggtgtttacggagtttggagggtgcgtgtcacgttgtg-t 47235522  T
Q  399 tgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttattt 498  Q
    ||| |||||||||| ||| |  |||||||| |  ||   |||||   || ||| | |||||||||||| ||||||||||||| |  || |||||||  ||    
T  47235523 tgagccttttccttttgatttgtttgttgtttaaac--ttcgcacgcca-tgtctttcgtcttacataatgtgtgctggttttcgatgggccggttcatt 47235619  T
Q  499 ttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatat-gttgttctctggtgtaccgggggcaaggggtgccctgctgatttg 596  Q
    | |||||||||||| ||||    |||||| || ||| | ||||||||||| | | ||| |||||  ||||||||||||| |||||||||||||| |||||    
T  47235620 tggcttcgagatcgggagtcagggtctagctgcaatctttgtttgacttggtttggtttttctccagtgtaccgggggcgaggggtgccctgctaatttg 47235719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 14193646 - 14193741
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttg 394  Q
    |||||||||||||| | |||||||||||||||||||||| | | | ||||||||||| ||||||||||| || |||||||| || | |||||||||    
T  14193646 tgttactcgggtccttattcgtcgtcactagctcttgttcgcgatttttggggttgttaaggtgtttagggtttttggaggaagcgagtcccgttg 14193741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 579 - 638
Target Start/End: Original strand, 14879421 - 14879480
Alignment:
Q  579 gggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcg 14879480  T

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Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 9584171 - 9584089
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||| |||||||||||| |  |||||||||||| ||||| | ||||||| ||||||  |||||||||||||||||||||||    
T  9584171 ttctcttgtgtaccggggggagagggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcg 9584089  T

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Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 564 - 637
Target Start/End: Original strand, 45163824 - 45163899
Alignment:
Q  564 tgtaccgggggcaaggggtgccctgctgatttggttctaaagt-ttg-gtgggccgatcacttttgattcgagatc 637  Q
    ||||||| |||| |||||||||||||| ||||||| ||| ||| ||| ||||||||||||||||||||||||||||    
T  45163824 tgtaccgagggcgaggggtgccctgctaatttggtactatagtcttgtgtgggccgatcacttttgattcgagatc 45163899  T

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Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 47945668 - 47945751
Alignment:
Q  556 ttctctggtgtacc-gggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| ||| ||||| |||||||||||  ||| || ||| |||||||  ||||||||||||||||||||||||||||||    
T  47945668 ttctctggtggaccagggggtaaggggtgcccgtctggttgggtcctaaagtccggtgggccgatcacttttgattcgagatcg 47945751  T

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Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 638
Target Start/End: Original strand, 43012374 - 43012420
Alignment:
Q  592 atttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  43012374 atttggttctaaagtctggtggcccgatcacttttgattcgagatcg 43012420  T

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Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 527
Target Start/End: Original strand, 27398805 - 27398891
Alignment:
Q  440 gcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    ||||||||| ||| || ||||||||||||||||||||| |||  |||  || ||||||||||||||||||||| |||||  |||||||    
T  27398805 gcatatcat-gttgattgtcttacatattgtgtgctggattctggtgcaccagttatttttgcttcgagatcgggagtttgtgtctag 27398891  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 575 - 638
Target Start/End: Original strand, 31482866 - 31482929
Alignment:
Q  575 caaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||| |||| || ||||||||||| ||| ||| |||| ||||||||||||||||||||||    
T  31482866 caaggggtaccctactaatttggttctatagtctggcgggcggatcacttttgattcgagatcg 31482929  T

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Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 638
Target Start/End: Complemental strand, 14755471 - 14755301
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtg 565  Q
    |||||||||| |||||  || |||||||| |||||||||||||||| |||| | | ||||| || |||  |||||  |  | | || |||| ||||||||    
T  14755471 ttgtgtgctgatttccgatgggccggttacttttgcttcgagatcgggagtcggtatctagctgcaatcttgtttcgcgcgttttggtgtttctctggtg 14755372  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||  ||  |||||||||||  |  ||| || ||||||| |||||||||||||||||||||||| ||||||    
T  14755371 taccgaaggtgaggggtgccctttt--ttttgtgctaaagtctggtgggccgatcacttttgattcaagatcg 14755301  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 1653267 - 1653175
Alignment:
Q  286 ttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggaggg 380  Q
    ||||||| || |||||||| ||||||||||  |||| ||| |||||||||||||| |  |||  |||||| | |||||||||||||||| |||||    
T  1653267 ttggaggttgcctctgttattcgggtccatactcgttgtcgctagctcttgtttgag--ttttaggttgttatggtgtttagagtgttttgaggg 1653175  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 603 - 638
Target Start/End: Complemental strand, 20710779 - 20710744
Alignment:
Q  603 aagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| |||||||||||||||||||||||||||||||    
T  20710779 aagtctggtgggccgatcacttttgattcgagatcg 20710744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 597
Target Start/End: Complemental strand, 4464122 - 4464013
Alignment:
Q  488 gccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttg-ttctctggtgtaccgggggcaaggggtgccc 586  Q
    |||||||| |||||||||||||||| |||| | |||||||||| |||  ||| || | |||| || || |||||| |||||||| |||  ||||||||||    
T  4464122 gccggttacttttgcttcgagatcgggagtcggtgtctagttgcaatcttgtgtggcgtgatttggtgtttctct-gtgtaccgagggtgaggggtgccc 4464024  T
Q  587 tgctgatttgg 597  Q
    | |||||||||    
T  4464023 ttctgatttgg 4464013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 638
Target Start/End: Original strand, 17550972 - 17551002
Alignment:
Q  608 tggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||||||||||||||||    
T  17550972 tggtgggccgatcacttttgattcgagatcg 17551002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 638
Target Start/End: Complemental strand, 24099425 - 24099363
Alignment:
Q  576 aaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |  ||||||| || || ||| |||||||||||||||||||||||||| ||||    
T  24099425 aaggggtgccttaatgatttgtttatagagtctggtgggccgatcacttttgattcgatatcg 24099363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 45163557 - 45163599
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||    
T  45163557 tgttacacgggtccatgttcgtcgtctctaactcttgtttgtg 45163599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 1652971 - 1652923
Alignment:
Q  589 ctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    |||||||||| || || | | ||||||||||||||||||||||||||||    
T  1652971 ctgatttggtcctgaactcttgtgggccgatcacttttgattcgagatc 1652923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 14755843 - 14755779
Alignment:
Q  51 cggtggccgtgg-gcttcagattctgcttgttttggtggcagactccccgaggtcactgtgtgtt 114  Q
    |||||||||||| |||||||||| | ||  ||||||||| |||| ||||||||||||| ||||||    
T  14755843 cggtggccgtggtgcttcagattttactctttttggtggaagaccccccgaggtcactctgtgtt 14755779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 457 - 638
Target Start/End: Original strand, 2825648 - 2825828
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgt 556  Q
    ||||||||||||||||| || | ||| ||| |||| |||| ||||||||||||| |||||||| ||||||| || ||| ||||||||||||||||| |||    
T  2825648 gtcttacatattgtgtgttg-tgtccggtgggccgattatatttgcttcgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgt 2825746  T
Q  557 tctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  2825747 tctctggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtccggtgggccgatcatttttgattcgagatcg 2825828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 300 - 637
Target Start/End: Original strand, 8254736 - 8255071
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | | |||| ||  |||||||||  | ||||| |||| | ||||| | |||||||     
T  8254736 tgttacacgggtccatgttcgtcgtcactagctcttgtttgtgattgttgggtggtttaggtgtttaccgagtttgaagggtgcgtgtcgctttgtgtt- 8254834  T
Q  400 gatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttt 499  Q
    || |||||||||| ||| |  |||||||| |  ||   | ||||  ||| || | ||||||||||||||||||| |||||| | ||| ||||||| ||||    
T  8254835 gagccttttccttttgattcgtttgttgtttaaact--ttgcatgccat-gtctttcgtcttacatattgtgtgttggttttcggtgggccggttctttt 8254931  T
Q  500 tgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttgg 597  Q
     |||||||||||| |||| || |||||| || ||| | ||||| ||||||| || || |||||||||||||||||||| |||||||||||||| ||||||    
T  8254932 ggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttgg 8255031  T
Q  598 ttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    | ||||||| |||||||||||||||||||||| |||||||    
T  8255032 tactaaagtctggtgggccgatcacttttgatccgagatc 8255071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 300 - 637
Target Start/End: Original strand, 8268154 - 8268489
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | | |||| ||  |||||||||  | ||||| |||| | ||||| | |||||||     
T  8268154 tgttacacgggtccatgttcgtcgtcactagctcttgtttgtgattgttgggtggtttaggtgtttaccgagtttgaagggtgcgtgtcgctttgtgtt- 8268252  T
Q  400 gatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttt 499  Q
    || |||||||||| ||| |  |||||||| |  ||   | ||||  ||| || | ||||||||||||||||||| |||||| | ||| ||||||| ||||    
T  8268253 gagccttttccttttgattcgtttgttgtttaaact--ttgcatgccat-gtctttcgtcttacatattgtgtgttggttttcggtgggccggttctttt 8268349  T
Q  500 tgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttgg 597  Q
     |||||||||||| |||| || |||||| || ||| | ||||| ||||||| || || |||||||||||||||||||| |||||||||||||| ||||||    
T  8268350 ggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttgg 8268449  T
Q  598 ttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    | ||||||| |||||||||||||||||||||| |||||||    
T  8268450 tactaaagtctggtgggccgatcacttttgatccgagatc 8268489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 465 - 638
Target Start/End: Complemental strand, 31050871 - 31050698
Alignment:
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctggt 564  Q
    |||| |||| |||||||| ||| |||||||| ||||||||||||| || |||| | || |||| || |||  |||||||||||||||| |||||| || |    
T  31050871 tattatgtgttggtttccggtgggccggttacttttgcttcgagaccgggagtcggtgactagctgcaatcctgtttgacttgatatggtgttctttgat 31050772  T
Q  565 gtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31050771 gtaccgggggcgaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcg 31050698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 297 - 638
Target Start/End: Original strand, 30964147 - 30964486
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||  ||| |||| ||  ||||||||   | |||||||||| | ||||| |||||||    
T  30964147 ctctgttacacgggtccatgttcgtcgtcactagctattgtttgtgctttttgggtggtttaggtgtttgcggagtttggagggtgcgtgtcacgttgtg 30964246  T
Q  397 tttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttat 496  Q
    || || |||||||||| ||| |  |||||||| |  ||   ||||||  ||| || | ||||||||| |||||||||||||||| |  || |||||||      
T  30964247 tt-gaaccttttccttttgatttgtttgttgtttaaact--tcgcatgccat-gtctttcgtcttacttattgtgtgctggttttcgatgggccggttca 30964342  T
Q  497 ttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatt 594  Q
    ||| ||||||||||||  ||| |  |||||| || ||| | ||||||||||||| || || ||||||||||||||| |||| |||||||||||||| |||    
T  30964343 tttggcttcgagatcggaagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgagggcgaggggtgccctgctaatt 30964442  T
Q  595 tggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| ||| | | || |||||||||||||||||||||| |||||    
T  30964443 tggtactataatctgatgggccgatcacttttgattcgtgatcg 30964486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 457 - 638
Target Start/End: Original strand, 4305587 - 4305770
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatat-gtt 554  Q
    |||||||||||||||| ||||||| | ||| |||||||  ||| |||||||||||| |||| |  | ||||||| ||| | ||||||||| ||| | |||    
T  4305587 gtcttacatattgtgtactggttttcggtgggccggttcatttggcttcgagatcgggagtcgggggctagttgcaatctttgtttgactggatttcgtt 4305686  T
Q  555 gttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     ||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| ||||||| |||||||||||||||||||||||    
T  4305687 tttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcg 4305770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 158 - 613
Target Start/End: Original strand, 19672672 - 19673121
Alignment:
Q  158 gatgcgtggttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggag 257  Q
    |||| |||||||||| || || |||||||| | |||||||||| |||||||||| | | ||| | | |||  ||||| |||||||| |||||||||||||    
T  19672672 gatgggtggttgtggctt-ttgggactcggttttggtgtcggatcggttttgcggatgagagttatttaatggggtgactggtgttgtttaggtgaggag 19672770  T
Q  258 gaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtca 357  Q
    |  ||| |||||| ||| ||| | | ||| ||||||   ||| ||||| ||| ||||||||||||| |||||||||||||| |||| |||||| |||| |    
T  19672771 gcgggtgtttgtttggg-tgatttccttt-ggaggcatcctccgttacacggatccatgttcgtcgccactagctcttgttggtgtttttggg-ttgtta 19672867  T
Q  358 aggtgtttagagtgttt-ggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatc 456  Q
    |||||||||| |  ||| || ||| | ||||| ||||| | | || |||||||||| ||| || ||||| || |||||||  |||||||||| |||  |     
T  19672868 aggtgtttagggaattttggggggtgcgtgtctcgttgagat-gagccttttccttttgattg-tttgtcgtttgcaccac-cgcatatcat-gttgttt 19672963  T
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatg-ttg 555  Q
    ||||| | ||||  | | || ||||||||| |||||||| |||||||||||||||| ||||   ||||||| || |||  |||||| ||||||||| |      
T  19672964 gtcttgcttatttcgcgttgatttccagtgggccggttacttttgcttcgagatcgggagtcagtgtctagctgcaatcttgtttggcttgatatgatat 19673063  T
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgg 613  Q
    |||||||||  | ||||||  ||||||||||| ||| |||||| ||||||| ||||||    
T  19673064 ttctctggttgatcgggggtgaggggtgcccttctgttttggtcctaaagtctggtgg 19673121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 637
Target Start/End: Complemental strand, 19815421 - 19815261
Alignment:
Q  478 tttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatat-gttgttctctggtgtaccgggggca 576  Q
    ||||| ||| ||| |||| ||||||||||||||||||||| | ||||||| || |||  |||||| |||||||| ||  || ||||||  ||||||||      
T  19815421 tttccggtgggccagttacttttgcttcgagatcgagagtcggtgtctagctgcaatcttgtttggcttgatattgtatttttctggttgaccgggggtg 19815322  T
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    ||||||||||| ||| |||||| ||||||| |||||| ||||| |||||| ||||||||||    
T  19815321 aggggtgcccttctgttttggtcctaaagtctggtggaccgattactttttattcgagatc 19815261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 467 - 638
Target Start/End: Complemental strand, 22811367 - 22811196
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtg 565  Q
    |||||||||||||| | ||| | |||||| ||||||||||||||||  | ||| |||||||||| |||| ||||||   |||| || |||| ||||||||    
T  22811367 ttgtgtgctggttttcggtgggtcggttacttttgcttcgagatcggaacttggtgtctagttgcaattttgtttggtgtgatttggtgtttctctggtg 22811268  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || |||||  | || ||||||| ||||||||||  |||||| |||||||||||||| |||| |||||||||||    
T  22811267 tatcggggtga-ggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcg 22811196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 467 - 638
Target Start/End: Original strand, 25753045 - 25753217
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtg 565  Q
    |||| |||||||||||  || || | ||| |||||||||||||||| |||| | ||||||| || |||  |||||| | |||| || |||| ||||||||    
T  25753045 ttgtttgctggtttccgatgggcagcttaattttgcttcgagatcgggagtcggtgtctagctgcaatcttgtttggcgtgatgtggtgtttctctggtg 25753144  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||| ||  ||| ||||||  || ||||||| ||||||| ||||||| |||||||||||||||||||||||    
T  25753145 taccggaggtgaggagtgcccgtcttatttggtcctaaagtctggtggggcgatcacttttgattcgagatcg 25753217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 488 - 638
Target Start/End: Complemental strand, 53823608 - 53823457
Alignment:
Q  488 gccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtgtaccgggggcaaggggtgccc 586  Q
    |||||||| |||||||||||||||| |||| | ||||||  || |||  || ||| |||||  || |||| |||||||||||||| ||  ||||||||||    
T  53823608 gccggttacttttgcttcgagatcgggagtcggtgtctaactgcaatcttgcttggcttgacttggtgtttctctggtgtaccggaggtgaggggtgccc 53823509  T
Q  587 tgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    | ||||||||||  |||||| |||||| || |||||||||||||||||||||    
T  53823508 ttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcg 53823457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 38639860 - 38639744
Alignment:
Q  221 tttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcg 320  Q
    |||||||| |||||| ||||||| ||||||||||||||  | | |||||||| ||||| | || |   ||||||| ||||||||||||| ||| ||||||    
T  38639860 tttataagggggtggttggtgttgtttaggtgaggaggtggatgtttgttggaggtgatttctgta--gaggctgcctctgttactcggatccttgttcg 38639763  T
Q  321 tcgtcactagctcttgttt 339  Q
    ||||||||| |||||||||    
T  38639762 tcgtcactaactcttgttt 38639744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 457 - 637
Target Start/End: Original strand, 12296038 - 12296219
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttg- 555  Q
    ||||||||||||||||||||| |||  ||| |||| ||| |||||||||||||||| ||||||  |||||| || | |  | |||| || | || | ||     
T  12296038 gtcttacatattgtgtgctggattctggtgggccgattacttttgcttcgagatcgggagttggcgtctagctgcattcttatttggctagctacggtga 12296137  T
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    | |||| ||| |||||||| |||||||||||  ||| |||||| || |||| ||||| ||||| | ||||||||||||||||    
T  12296138 tcctctagtggaccgggggtaaggggtgcccctctggtttggtcctgaagtctggtgtgccgagcgcttttgattcgagatc 12296219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 637
Target Start/End: Original strand, 38929790 - 38929871
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    |||||||||| |||||||| |||||||||||  ||| || ||| || |||| || |||||||||||||||||||||||||||    
T  38929790 ttctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgctgggccgatcacttttgattcgagatc 38929871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 2061856 - 2061776
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    |||||||||||| ||  ||  |||||||||||  ||||||| | ||||||| |||||||| ||||||||||||||||||||    
T  2061856 ttctctggtgtatcgaaggtgaggggtgccctcttgatttgatcctaaagtctggtgggctgatcacttttgattcgagat 2061776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 638
Target Start/End: Original strand, 49747524 - 49747572
Alignment:
Q  590 tgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  49747524 tgatttggttctaaagtctggtgagccgatcacttttgatttgagatcg 49747572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 571 - 638
Target Start/End: Original strand, 35800467 - 35800534
Alignment:
Q  571 ggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| ||| |||||||| ||||||||||||| |||| |||||  |||||| |||||||||||||||||    
T  35800467 ggggtaagtggtgcccttctgatttggttctgaagtctggtgaaccgatcgcttttgattcgagatcg 35800534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 4305432 - 4305545
Alignment:
Q  298 tctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgt 397  Q
    ||||||||  || ||||||||||||||||||||||||||||||||  ||| |||||||   |||||||   ||||||||| ||   ||||| |||||||     
T  4305432 tctgttacatggatccatgttcgtcgtcactagctcttgtttgtgctttttgggttgtttgggtgttttcggtgtttggaaggttcgtgtcacgttgtg- 4305530  T
Q  398 ttgatccttttcctt 412  Q
    |||| ||||||||||    
T  4305531 ttgagccttttcctt 4305545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 604 - 638
Target Start/End: Original strand, 26474847 - 26474881
Alignment:
Q  604 agtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||||||||||||||||||||    
T  26474847 agtttggtgggccgatcacttttgattcgagatcg 26474881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 31051048 - 31050966
Alignment:
Q  285 tttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttag 367  Q
    ||||||||| | ||||| ||| |||||||| ||||||||||||||||||||||| || | |||||| |  | |||||||||||    
T  31051048 tttggaggcagcctctggtacacgggtccacgttcgtcgtcactagctcttgttggtctttttgggttgtttaaggtgtttag 31050966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 527
Target Start/End: Complemental strand, 46699002 - 46698933
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    ||||||||||||||||||||| |||  ||| |||| ||| |||||||||||||||| |||||| |||||||    
T  46699002 gtcttacatattgtgtgctggattct-gtgggccgattacttttgcttcgagatcgggagttggtgtctag 46698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 39421110 - 39421049
Alignment:
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||| ||||| ||||  || ||  |||||||||||||||||||||||||||||||    
T  39421110 aggggtgcccttctgatatggtcttatagcctggtgggccgatcacttttgattcgagatcg 39421049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 638
Target Start/End: Complemental strand, 46698881 - 46698821
Alignment:
Q  578 ggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||||||||| ||  ||| ||||||||||||  |||||||||||||||||    
T  46698881 ggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcg 46698821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 603 - 638
Target Start/End: Original strand, 16501741 - 16501776
Alignment:
Q  603 aagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||| |||||||||||||||||    
T  16501741 aagtttggtgggccgatcgcttttgattcgagatcg 16501776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 635
Target Start/End: Complemental strand, 19311451 - 19311381
Alignment:
Q  564 tgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgaga 635  Q
    |||| ||||||  ||||||| ||| ||||||||||| ||| || ||||||| ||||||||||||||||||||    
T  19311451 tgtaacgggggtgaggggtgtccttctgatttggttttaa-gtctggtgggtcgatcacttttgattcgaga 19311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 603 - 638
Target Start/End: Original strand, 53756766 - 53756801
Alignment:
Q  603 aagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| |||||||||||||||||||||||||||||||    
T  53756766 aagtctggtgggccgatcacttttgattcgagatcg 53756801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 638
Target Start/End: Complemental strand, 21387294 - 21387240
Alignment:
Q  584 ccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||| |||||||||| ||  ||| |||||| ||||||||||||||||||||||||    
T  21387294 cccttctgatttggtgctggagtctggtggaccgatcacttttgattcgagatcg 21387240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 638
Target Start/End: Complemental strand, 40813847 - 40813817
Alignment:
Q  608 tggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||||||||||||||||    
T  40813847 tggtgggccgatcacttttgattcgagatcg 40813817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 638
Target Start/End: Complemental strand, 6600030 - 6599981
Alignment:
Q  589 ctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||| |||| ||| ||||||||||||| ||||||||| |||||||    
T  6600030 ctgatttggctctagagtctggtgggccgatcgcttttgattagagatcg 6599981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 637
Target Start/End: Complemental strand, 37707421 - 37707392
Alignment:
Q  608 tggtgggccgatcacttttgattcgagatc 637  Q
    ||||||||||||||||||||||||||||||    
T  37707421 tggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 637
Target Start/End: Complemental strand, 39041340 - 39041311
Alignment:
Q  608 tggtgggccgatcacttttgattcgagatc 637  Q
    ||||||||||||||||||||||||||||||    
T  39041340 tggtgggccgatcacttttgattcgagatc 39041311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 21988044 - 21987964
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    |||||||||| |||||||| |||||||||||  ||| || ||| || |||| || ||  |||||| |||||||||||||||    
T  21988044 ttctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgatgaaccgatcgcttttgattcgagat 21987964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 36962700 - 36962652
Alignment:
Q  589 ctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    ||||||||||| |  ||| |||||||||||| |||||||||||||||||    
T  36962700 ctgatttggttttggagtctggtgggccgattacttttgattcgagatc 36962652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 308 - 638
Target Start/End: Complemental strand, 36136 - 35807
Alignment:
Q  308 gggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttt 407  Q
    |||||||||| ||||||| ||||||||||||| || |||| |||| ||  ||||||||| || ||||| |||| | ||||| ||||||||| || |||||    
T  36136 gggtccatgtccgtcgtctctagctcttgtttatgccttttgggtggtttaggtgtttacagagtttgaagggtgagtgtcacgttgtgtt-gagccttt 36038  T
Q  408 tccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcga 507  Q
    ||||| ||| |  |||||||| |  ||   ||||||  ||| || | ||||||||||||||||||||||| || | ||| |||||||  ||| |||||||    
T  36037 tccttttgatttgtttgttgtttaaact--tcgcatgccat-gtctttcgtcttacatattgtgtgctggctttcggtgggccggttcatttggcttcga 35941  T
Q  508 gatcgagagttgatgtctagttggaat-tatgtttgacttgatat--gttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaa 604  Q
    ||||| |||| || ||||||||| ||| | |||||||||| || |  ||| |||||||||||||||||||| |||||||||  ||| |||||||| || |    
T  35940 gatcgggagtcgaggtctagttgcaatctttgtttgacttaattttggtttttctctggtgtaccgggggcgaggggtgcctagctaatttggttatata 35841  T
Q  605 gtttggtgggccgatcacttttgattcgagatcg 638  Q
    || | |||||||||||||||||||||||||||||    
T  35840 gtctagtgggccgatcacttttgattcgagatcg 35807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 5e-39; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 488 - 636
Target Start/End: Complemental strand, 16510489 - 16510339
Alignment:
Q  488 gccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg-ttgttctctggtgtaccgggggcaaggggtgcc 585  Q
    |||||||| |||||||||||||||| |||| |  |||||| || ||| | |||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  16510489 gccggttacttttgcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatatggtttttctctggtgtaccgagggcaaggggtgcc 16510390  T
Q  586 ctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||||||||    
T  16510389 ctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagat 16510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 465 - 612
Target Start/End: Complemental strand, 15132732 - 15132585
Alignment:
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctggt 564  Q
    ||||||||| |||||| | ||| |||||||| |||||||||||||||| |||| | || |||| || |||  |||||||||||||||| ||||||||| |    
T  15132732 tattgtgtgatggttttcggtgggccggttacttttgcttcgagatcgggagtcggtgactagctgcaatcctgtttgacttgatatggtgttctctgat 15132633  T
Q  565 gtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtg 612  Q
    |||| |||||| |||||||||||| |||||| |||||||||| |||||    
T  15132632 gtactgggggcgaggggtgccctgttgattttgttctaaagtctggtg 15132585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 458 - 638
Target Start/End: Original strand, 3117355 - 3117538
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgttt-gacttgatatg-tt 554  Q
    |||||||||||||||| |||||| ||||| |||||||  ||| |||||||||| | |||| |  ||||||||| ||| | ||||| |||||||| || ||    
T  3117355 tcttacatattgtgtgttggttttcagtgggccggttcatttggcttcgagattgggagtcggggtctagttgcaatctttgttttgacttgatttggtt 3117454  T
Q  555 gttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     ||||||||||| |||||||| |||||||||||||| ||||| |  || ||| |||||||||||||||||||||||| ||||||    
T  3117455 tttctctggtgttccgggggcgaggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcg 3117538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 467 - 634
Target Start/End: Complemental strand, 3880791 - 3880623
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtg 565  Q
    |||| ||||||||||| ||| ||| |||| |||||||| ||||||| |||| | ||||||| ||  ||  |||||| | |||| || |||| |||||||     
T  3880791 ttgtttgctggtttccggtgggccagttacttttgctttgagatcgggagtcggtgtctagctgctatcttgtttggcatgatttggtgtttctctggtt 3880692  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgag 634  Q
    ||||| |||  || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  3880691 taccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgattcgag 3880623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 250 - 638
Target Start/End: Complemental strand, 20702225 - 20701839
Alignment:
Q  250 gtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttgg 349  Q
    |||||||||  ||| |||||||||||||| | ||||| |||||  | || |||||||||||||| |||||||||||||||| |||||| ||  | ||| |    
T  20702225 gtgaggaggcgggtgtttgttgggggtgatttctttt-ggaggtagcctttgttactcgggtccttgttcgtcgtcactagttcttgtatgcattttttg 20702127  T
Q  350 gg-ttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtga-ctgatttgttgtctgcaccaatcgcatatca 447  Q
    || |||| ||||||||||| ||||||||||| || | ||||||||| |    | | |||||| | ||| ||| |||||||| ||||| |  ||| ||||     
T  20702126 ggattgttaaggtgtttagggtgtttggaggaagcgggtcccgttgagcggta-ctttttccgtttgatctg-tttgttgtttgcactac-cgcgtatc- 20702031  T
Q  448 ttgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttg 547  Q
    |||||  | ||| ||| | ||||||| ||||||||  || |||||||| |||||||| ||||||| || | | ||||||| || || | |||||| | ||    
T  20702030 ttgttgtttgtcctactttttgtgtgatggtttccgatgggccggttacttttgctttgagatcgggattcggtgtctagctgcaaatttgtttggcgtg 20701931  T
Q  548 atatg-ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || || || |||||||||||||||||||  ||||||||||| ||||||||||  |  ||  ||||| |||||||||||||||||||||||||    
T  20701930 atttggtttttctctggtgtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcg 20701839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 458 - 638
Target Start/End: Complemental strand, 32935556 - 32935375
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt 557  Q
    |||||||||||||||||||| |||| ||| | |||||| |||||||| ||||||   ||||| ||||||| || |||  | |||| |||| |||| ||||    
T  32935556 tcttacatattgtgtgctggattccggtgggtcggttacttttgctttgagatcagaagttggtgtctagctgcaatcttctttggcttgttatggtgtt 32935457  T
Q  558 -ctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     || || || | ||||||  |||||| |||| |||||||||| || |||| ||||||||||||| |||||||||||||||||    
T  32935456 tctatgatggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcg 32935375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 297 - 428
Target Start/End: Complemental strand, 16510668 - 16510538
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||  ||| |||| ||  |||||||||  | |||||||||| | |||| ||||||||    
T  16510668 ctctcttacacgggtccatgttcgtcgtcactagctcttgtttctgcttttcgggtggtttaggtgtttatggagtttggagggtgcgtgttccgttgtg 16510569  T
Q  397 tttgatccttttccttgtgactgatttgttgt 428  Q
     |||| |||||||||| ||| |  ||||||||    
T  16510568 -ttgagccttttccttttgatttgtttgttgt 16510538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 590 - 638
Target Start/End: Original strand, 34105410 - 34105458
Alignment:
Q  590 tgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  34105410 tgatttgtttctagagtttggtgggccgatcacttttgattcgagatcg 34105458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 567 - 638
Target Start/End: Complemental strand, 26216125 - 26216055
Alignment:
Q  567 accgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| || ||| |||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||    
T  26216125 accggaggtaagaggtgcccttctgatttgattctaa-gtctggtgggccgatcacttttgattcgagatcg 26216055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 637
Target Start/End: Original strand, 12794077 - 12794159
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatc-acttttgattcgagatc 637  Q
    |||||| ||| ||| |||| |||||||| ||| ||| |||||||||||||| | ||||||||||| |||||||||||||||||    
T  12794077 ttctctagtgaaccaggggtaaggggtgtccttctgttttggttctaaagtctagtgggccgatcaacttttgattcgagatc 12794159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 26534813 - 26534757
Alignment:
Q  580 ggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    |||| ||| |||||||||| || |||| |||||||||||||||||||||||||||||    
T  26534813 ggtggccttctgatttggtcctgaagtctggtgggccgatcacttttgattcgagat 26534757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 590 - 638
Target Start/End: Original strand, 21266110 - 21266158
Alignment:
Q  590 tgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||| ||||||  ||||||||||||| |||||||||||||||||    
T  21266110 tgatttggtcctaaagactggtgggccgatcgcttttgattcgagatcg 21266158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 3117219 - 3117290
Alignment:
Q  317 ttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtc 388  Q
    ||||||||||||||||||||||||||  ||| |||| ||  |||||||||  | |||||||||| |||||||    
T  3117219 ttcgtcgtcactagctcttgtttgtgcttttcgggtggtttaggtgtttatggagtttggagggtgtgtgtc 3117290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 638
Target Start/End: Original strand, 9224042 - 9224086
Alignment:
Q  594 ttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| ||||||| |||||||| |||| |||||||||||||||||    
T  9224042 ttggtcctaaagtctggtgggctgatcgcttttgattcgagatcg 9224086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 455 - 638
Target Start/End: Original strand, 698221 - 698406
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg- 552  Q
    ||||||||||||||||||||||||||  |||| |||||||  ||| |||||||||||| ||||    ||||||||| ||| | ||||||||||||| ||     
T  698221 tcgtcttacatattgtgtgctggtttttagtgggccggttcatttggcttcgagatcgggagtcagggtctagttgcaatctttgtttgacttgatttgg 698320  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || |||||||||||||||||||| |||||||||||||| ||||||| ||| ||| |||||| |||||| |||||||||||||||||    
T  698321 tttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcg 698406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 455 - 638
Target Start/End: Original strand, 34377958 - 34378143
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatgt 553  Q
    |||||||| |||| |||||||||||| | ||  |||||||  ||| |||||||||||| |||| || |||||| || ||| | ||||||||||||| ||     
T  34377958 tcgtcttatatatcgtgtgctggttttcggtaggccggttcatttggcttcgagatcgggagtcgaggtctagctgcaatctttgtttgacttgatttgg 34378057  T
Q  554 -tgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     | |||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  34378058 gttttctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcg 34378143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 455 - 638
Target Start/End: Original strand, 18593103 - 18593288
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgatatg- 552  Q
    |||| ||||||||||||||||| ||| | ||| |||||||  ||| |||||||||||| |||| |  ||||||||| ||| | ||||||||||||| ||     
T  18593103 tcgttttacatattgtgtgctgattttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagttgcaatctttgtttgacttgatttgg 18593202  T
Q  553 ttgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    || |||||| ||||||||||||| |||| ||||||||| ||||||| ||| ||||| |||||| ||||||||||||||||||||||    
T  18593203 tttttctctcgtgtaccgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagatcg 18593288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 489 - 638
Target Start/End: Complemental strand, 7392217 - 7392067
Alignment:
Q  489 ccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtgtaccgggggcaaggggtgccct 587  Q
    ||||||| |||||||||||||||| |||||| ||||||| || |||  |||||| |||||| || |||| ||||| ||||||| |||  |||||||||||    
T  7392217 ccggttacttttgcttcgagatcgggagttggtgtctagctgcaatcttgtttggcttgatttggtgtttctctgatgtaccgagggtgaggggtgccct 7392118  T
Q  588 gctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     |||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  7392117 tctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcg 7392067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 473 - 638
Target Start/End: Original strand, 8297347 - 8297513
Alignment:
Q  473 gctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtgtaccgg 571  Q
    |||||||| ||||| |||| ||| ||||||||||||||||||||||| ||||||| || |||| |||||  |||||| || |||| |||| ||||||||     
T  8297347 gctggttttcagtgggccgattacttttgcttcgagatcgagagttggtgtctagctgcaattttgttttgcttgatttggtgtttctctagtgtaccga 8297446  T
Q  572 gggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||  ||||||||||| |||||||||||||||||  ||||||||  || | ||||||||||||||||    
T  8297447 gggtgaggggtgcccttctgatttggttctaaagcatggtgggctaataatttttgattcgagatcg 8297513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 230 - 379
Target Start/End: Complemental strand, 26046405 - 26046257
Alignment:
Q  230 gggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcacta 329  Q
    |||||||||||||| |||||||||| |||  ||| |||||||||| ||| | ||||| |||| ||| ||||||||||||||||| |||||||| ||||||    
T  26046405 gggtggctggtgttgtttaggtgagtaggcgggtgtttgttggggttgatttctttt-ggagactgcctctgttactcgggtccttgttcgtcttcacta 26046307  T
Q  330 gctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagg 379  Q
    |||||||||||||| ||||||||  |  |||||||||| |||||| ||||    
T  26046306 gctcttgtttgtgtttttggggtgttttaggtgtttagggtgtttagagg 26046257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 467 - 638
Target Start/End: Complemental strand, 13954441 - 13954270
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtg 565  Q
    |||| ||||||||| | ||| |||||||| ||||||||||||||| ||||| | ||||||| || |||  | ||||||||||| |  |||| ||||||||    
T  13954441 ttgtatgctggttttcggtgggccggttacttttgcttcgagatcaagagtcggtgtctagctgcaatcttatttgacttgattttgtgtttctctggtg 13954342  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||  ||  ||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  13954341 taccgaaggtgaggggtgcctt-ctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcg 13954270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 181 - 383
Target Start/End: Complemental strand, 13954721 - 13954521
Alignment:
Q  181 gactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgact 280  Q
    ||||||||| ||||||||||||||||| | | | ||||| | ||| |  |||||||| ||||| |||||||||||||   ||| |||||||||||||| |    
T  13954721 gactcggatttggtgtcggaacggttt-gtggacgggagctatattacggggtggctagtgttgtttaggtgaggagacgggtgtttgttgggggtgatt 13954623  T
Q  281 cctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggaggg 380  Q
     | | | ||||| ||  | ||||| || ||||  |||||||||||||||||||||||||| || | ||| ||||| ||||||||||| ||||||||||||    
T  13954622 tcctct-ggaggttgcgtttgttattcaggtctttgttcgtcgtcactagctcttgtttgcgtttctggagttgttaaggtgtttagggtgtttggaggg 13954524  T
Q  381 agt 383  Q
    |||    
T  13954523 agt 13954521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 31721640 - 31721722
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||||||| |||||||||||| ||||| ||||||| |||| |  |||||||||| |||||||||||||||||    
T  31721640 ttctctggtggaccgggggtaaggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgagatcg 31721722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 478 - 638
Target Start/End: Complemental strand, 7195435 - 7195275
Alignment:
Q  478 tttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatat-gttgttctctggtgtaccgggggca 576  Q
    ||||||||| ||| |||| |||||||||||||||| |||| | || |||| || |||  |||||| | |||| | ||  ||||||||||||||  |||      
T  7195435 tttccagtgggccagttacttttgcttcgagatcgggagtcggtggctagctgcaatattgtttggcgtgatttagtgtttctctggtgtacc-agggtg 7195337  T
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||| |||||||||   |||||| ||||| |||||||||||||||||||||||||    
T  7195336 aggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatcg 7195275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 556 - 637
Target Start/End: Original strand, 29087444 - 29087525
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    ||||||| |||||||||||| |||||||| |||||  |||||||||||||| |||||| | |||| ||||||||||||||||    
T  29087444 ttctctgttgtaccgggggcgaggggtgctctgctattttggttctaaagtctggtggactgatcccttttgattcgagatc 29087525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 556 - 637
Target Start/End: Complemental strand, 33259000 - 33258919
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatc 637  Q
    |||||||||||||||  ||  ||||||| ||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  33259000 ttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaagtctggtgggccgatcacttttgattcgagatc 33258919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 29087254 - 29087350
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgtt 393  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||  |||||||||  | |||||||||  | ||||||||||    
T  29087254 ctctgttacatgggtccatgttcgtcgtcactagctcttgtttgtgttttttgggtggtttaggtgtttacggagtttggaggatgcgtgtcccgtt 29087350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 369
Target Start/End: Original strand, 8297091 - 8297255
Alignment:
Q  206 tttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttac 305  Q
    |||||||| ||||| | |||||| |||||||| ||||| ||||||||| ||||    | ||||||||| || | |  |||| ||||| || |||||||||    
T  8297091 tttgcgaaagggagctatataagggggtggctagtgttgtttaggtgaagaggtgaatgtttgttgggagtaatttatttt-ggaggttgcctctgttac 8297189  T
Q  306 tcgggtccatgttcgtcgtcactagctcttgtttg--tgtctttggggttgtcaaggtgtttagag 369  Q
    ||| |||| |||||||| |||||||| ||||||||  | | ||||||||||| |||||||||||||    
T  8297190 tcgagtccttgttcgtcatcactagcacttgtttgcatttttttggggttgttaaggtgtttagag 8297255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 638
Target Start/End: Complemental strand, 24072484 - 24072302
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgata-tgttg 555  Q
    ||||||||| ||||||||||| ||| |||| |||||||| ||||||||| |||||| ||||||  || ||| || |||  ||||||  | | ||  ||      
T  24072484 gtcttacatgttgtgtgctggattctagtgggccggttacttttgcttcaagatcgggagttggcgtttagctgtaatcttgtttggatagctacagtgt 24072385  T
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |||| |||   |||||||||| |||||||||| ||||||| |||| ||| |||| ||||||||| |||||||    
T  24072384 ttctctggtggaccgagggtttggggtgcccttctgatttggtcctaaagtctggttggctgatcgcttttgatttgagatcg 24072302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 13954939 - 13954866
Alignment:
Q  18 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggccgtgggcttcagattctgcttgttttggtggcag 91  Q
    |||||||||||| |||||| |||||||||  | |||||| ||||||||||||||| |||||| |||||||||||    
T  13954939 gtaaggatcgtggtggttggggtttgttcacgacggtggtcgtgggcttcagattttgcttgatttggtggcag 13954866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 638
Target Start/End: Original strand, 12046238 - 12046300
Alignment:
Q  576 aaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||| |  ||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  12046238 aaggggtgccatagtgatttgattcggaagtttggtgggccgatcacttttgattcgagatcg 12046300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 18592949 - 18592994
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||    
T  18592949 ctctgttacacaggtacatgttcgtcgtcactagctcttgtttgtg 18592994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 14302548 - 14302468
Alignment:
Q  556 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagat 636  Q
    |||||||||||| || |||  |||| |||||| ||| |||||| ||||||| |||||| | ||||||||||| ||||||||    
T  14302548 ttctctggtgtatcgagggtgagggatgcccttctgttttggtcctaaagtctggtggactgatcacttttggttcgagat 14302468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 638
Target Start/End: Complemental strand, 17854183 - 17854103
Alignment:
Q  558 ctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||| ||||||||  ||||||||||| || |||||||  | |||| ||||||||||| | ||||||| |||||||||    
T  17854183 ctctggtggaccgggggtgaggggtgcccttctaatttggtcttgaagtatggtgggccgaccgcttttgactcgagatcg 17854103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 638
Target Start/End: Complemental strand, 39184253 - 39184223
Alignment:
Q  608 tggtgggccgatcacttttgattcgagatcg 638  Q
    |||||||||||||||||||||||||||||||    
T  39184253 tggtgggccgatcacttttgattcgagatcg 39184223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 638
Target Start/End: Original strand, 25992007 - 25992052
Alignment:
Q  593 tttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||| ||||||| ||||||||| ||| |||||||||||||||||    
T  25992007 tttggtgctaaagtctggtgggccaatcgcttttgattcgagatcg 25992052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 638
Target Start/End: Complemental strand, 26046045 - 26046000
Alignment:
Q  593 tttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    |||||| ||||||| |||||  ||||||||||||||||||||||||    
T  26046045 tttggtcctaaagtctggtgaaccgatcacttttgattcgagatcg 26046000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 7392385 - 7392321
Alignment:
Q  317 ttcgtcgtcactagctcttgtttgtgtctttg-gggttgtcaaggtgtttagagtgtttggaggg 380  Q
    |||||||||||||||||||||||| || |||| ||||||| || ||||| || ||| ||||||||    
T  7392385 ttcgtcgtcactagctcttgtttgcgtttttgtgggttgttaatgtgttgagggtgcttggaggg 7392321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 7392515 - 7392471
Alignment:
Q  163 gtggttgtggtttgtttggactcggatctggtgtcggaacggttt 207  Q
    ||||| ||||||| ||||||||||||| ||||||| |||||||||    
T  7392515 gtggtcgtggtttatttggactcggatttggtgtcagaacggttt 7392471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 24072649 - 24072568
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttag 367  Q
    |||| ||||| | |||||||| |||||||||| ||||| ||| |||||||||||||  |  ||| ||||||| |||||||||||    
T  24072649 ttttagaggccgcctctgttattcgggtccatattcgttgtcgctagctcttgtttaag--ttttgggttgttaaggtgtttag 24072568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 158 - 379
Target Start/End: Original strand, 57761 - 57981
Alignment:
Q  158 gatgcgtggttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggag 257  Q
    |||| ||||| |||| || |||||||| |||| |||||| |||| ||||| ||| | | ||| | |||||| |||||||| ||||| |||||||||||||    
T  57761 gatgggtggtcgtggcttttttggacttggatttggtgttggaatggttt-gcggacgagagttatataagggggtggcttgtgttatttaggtgaggag 57859  T
Q  258 gaaggtatttgttggggg-tgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtc 356  Q
    |  ||| ||||||||||| ||  | ||||| |||||||  |||||| ||||  |||| ||||||||||||||||||| |||||| || ||| |||||||     
T  57860 gtgggtgtttgttggggggtggtttctttt-ggaggctacctctgtaactcatgtccttgttcgtcgtcactagctcatgtttgcgttttttgggttgtt 57958  T
Q  357 aaggtgtttagagtgtttggagg 379  Q
    ||||||||||| |||||||||||    
T  57959 aaggtgtttagggtgtttggagg 57981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 467 - 638
Target Start/End: Original strand, 58000 - 58172
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtg 565  Q
    |||||||||| |||||| |  |||||||| |||||||||||||||| |||| | ||||||| || |||  |||||| | |||| || |||| ||||||||    
T  58000 ttgtgtgctgatttccattaggccggttacttttgcttcgagatcgggagtcgttgtctagctgcaatcttgtttggcgtgatttggtgtttctctggtg 58099  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||  |||     |||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  58100 tacctagggtgtatggtgcccttcagatttggtcctaaagtttggtgggccgatcacttttgattcaagatcg 58172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 57519 - 57612
Alignment:
Q  18 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggccgtgg-gcttcagattctgcttgttttggtggcagactccccgaggtcactgtgtg 112  Q
    |||||||||||| |||||| |||| ||||| |  ||||||||||| ||||| |||| ||||||||| ||||||| || || |||||||||||||||    
T  57519 gtaaggatcgtggtggttgtggtt-gttcgcgctggtggccgtggtgcttcggattttgcttgttt-ggtggcacacccctcgaggtcactgtgtg 57612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 215 - 382
Target Start/End: Complemental strand, 42597 - 42429
Alignment:
Q  215 gggagatttataagagggtggctggtgtttt-ttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtcc 313  Q
    ||||| |||||||| |||| |||| |||| | |||||||||||||  ||| |||||||||||||| | ||| | ||||| || |||| ||||||||||||    
T  42597 gggagctttataagggggttgctgatgttatgttaggtgaggaggcgggtgtttgttgggggtgatttcttct-ggaggttgcctctattactcgggtcc 42499  T
Q  314 atgtt-cgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggag 382  Q
     |||| |||||||||||||||||||||| || ||||||||||| || |||||||  ||||||||||||||    
T  42498 ttgtttcgtcgtcactagctcttgtttgcgtttttggggttgttaaagtgtttatggtgtttggagggag 42429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 638
Target Start/End: Complemental strand, 42324 - 42174
Alignment:
Q  490 cggttatttttgcttcgagatcgagagttgatgtctagttggaattatgttt-gacttgatatgttgtt-ctctggtgtaccgggggcaaggggtgccct 587  Q
    |||||| |||||||||||||||| |||| ||||||||| || | |  ||||| | ||| || || |||| ||||||| ||||   ||  |||||||||||    
T  42324 cggttaattttgcttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgccct 42225  T
Q  588 gctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     ||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  42224 tctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcg 42174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 467 - 638
Target Start/End: Original strand, 36580 - 36752
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgtt-ctctggtg 565  Q
    ||||||| |||||||| ||| |||| ||| ||||| |||||||||  |||| | ||||||| || |||| |||||| | |||| || |||| ||||||||    
T  36580 ttgtgtgttggtttccggtgggccgattaattttgattcgagatcaggagtcggtgtctagctgcaattttgtttggcgtgatttggtgtttctctggtg 36679  T
Q  566 taccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||| | |  ||||||||||| |||||||||| ||||||| ||| |||| ||||||||||||||||||||||    
T  36680 taccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcg 36752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 379
Target Start/End: Original strand, 36335 - 36494
Alignment:
Q  223 tataagagggtggctggtgttttttaggtgaggaggaaggtatttgttggg-ggtgactcctttttggaggctggctctgttactcgggtccatgttcgt 321  Q
    |||||| |||||| |||| || |||||||||||||| |||| |||  |||| ||||| | ||||  ||||| || ||||||||||||||||| |||||||    
T  36335 tataagggggtggttggttttgtttaggtgaggaggcaggtgttttgtgggtggtgatttctttg-ggaggttgcctctgttactcgggtccttgttcgt 36433  T
Q  322 cgtcactagctcttgtt--tgtgtctttggggttgtcaaggtg-tttagagtgtttggagg 379  Q
    ||||| |||||||||||   || | ||||||||||| |||||| ||||| |||||| ||||    
T  36434 cgtcagtagctcttgttcacgtttttttggggttgttaaggtgttttagggtgtttagagg 36494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 577 - 638
Target Start/End: Original strand, 19367 - 19428
Alignment:
Q  577 aggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  19367 aggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcg 19428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 457 - 638
Target Start/End: Complemental strand, 1234 - 1053
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatat--gtt 554  Q
    ||||||||||||||||||||| ||| |||| |||| ||| |||||||||||||| | |||||| ||||||| || |||  ||||||| ||||| |  ||     
T  1234 gtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatcttgtttga-ttgattttggtg 1136  T
Q  555 gttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
     |||||||||| || |||    |||||| |||| ||||||||||  | |||| ||||||||||||| |||||||||||||||||    
T  1135 tttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcg 1053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 590 - 638
Target Start/End: Original strand, 3827 - 3875
Alignment:
Q  590 tgatttggttctaaagtttggtgggccgatcacttttgattcgagatcg 638  Q
    ||||||| || || ||| |||||||||||||| ||||||||||||||||    
T  3827 tgatttgtttttagagtctggtgggccgatcaattttgattcgagatcg 3875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 46787 - 46843
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttg 340  Q
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T  46787 ttttgaaggccgcctctgttattcgggtccatatccgtcgtcgctagctcttgtttg 46843  T

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