View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9780_low_4 (Length: 572)

Name: NF9780_low_4
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9780_low_4
NF9780_low_4
[»] chr1 (23 HSPs)
chr1 (18-562)||(7857079-7857622)
chr1 (309-562)||(24658645-24658898)
chr1 (307-562)||(46814579-46814831)
chr1 (298-512)||(27032025-27032237)
chr1 (251-382)||(10785617-10785748)
chr1 (223-365)||(16147202-16147341)
chr1 (298-526)||(30686054-30686278)
chr1 (297-412)||(31586021-31586136)
chr1 (457-527)||(38544885-38544955)
chr1 (297-387)||(46693104-46693194)
chr1 (284-340)||(27102003-27102059)
chr1 (230-366)||(52278146-52278279)
chr1 (458-517)||(5389580-5389639)
chr1 (457-512)||(50589368-50589423)
chr1 (467-517)||(10785490-10785540)
chr1 (297-339)||(41920186-41920228)
chr1 (457-530)||(17033449-17033522)
chr1 (457-549)||(46692945-46693038)
chr1 (308-416)||(24684733-24684840)
chr1 (455-549)||(41920313-41920408)
chr1 (250-379)||(9313518-9313649)
chr1 (300-342)||(20113851-20113893)
chr1 (308-342)||(24450262-24450296)
[»] chr2 (18 HSPs)
chr2 (238-561)||(7873947-7874259)
chr2 (215-382)||(1269105-1269273)
chr2 (225-510)||(17105047-17105327)
chr2 (227-379)||(37770934-37771088)
chr2 (250-394)||(41087064-41087208)
chr2 (299-412)||(39339126-39339238)
chr2 (284-367)||(7695762-7695844)
chr2 (51-108)||(7873708-7873766)
chr2 (284-350)||(14106846-14106912)
chr2 (313-398)||(10523819-10523904)
chr2 (455-549)||(39338991-39339086)
chr2 (465-558)||(14106641-14106734)
chr2 (457-518)||(16952539-16952600)
chr2 (457-518)||(17023204-17023265)
chr2 (457-518)||(17060510-17060571)
chr2 (457-518)||(17079033-17079094)
chr2 (458-549)||(10523960-10524052)
chr2 (467-527)||(37770789-37770849)
[»] chr8 (14 HSPs)
chr8 (206-562)||(15821491-15821844)
chr8 (237-382)||(10248842-10248985)
chr8 (308-512)||(37987022-37987223)
chr8 (229-379)||(17657298-17657447)
chr8 (297-348)||(34389302-34389353)
chr8 (297-416)||(36630543-36630661)
chr8 (449-549)||(24995521-24995622)
chr8 (455-549)||(9519359-9519454)
chr8 (467-549)||(10248679-10248761)
chr8 (297-342)||(32066625-32066670)
chr8 (18-81)||(10248998-10249061)
chr8 (455-549)||(32066421-32066516)
chr8 (458-519)||(17720860-17720921)
chr8 (297-341)||(34866370-34866414)
[»] chr3 (14 HSPs)
chr3 (270-561)||(40023684-40023967)
chr3 (237-379)||(37123037-37123179)
chr3 (453-562)||(23328462-23328569)
chr3 (177-379)||(4464229-4464430)
chr3 (300-436)||(25647391-25647527)
chr3 (300-394)||(14193646-14193741)
chr3 (300-397)||(19176212-19176309)
chr3 (297-412)||(20611489-20611603)
chr3 (300-412)||(34476015-34476125)
chr3 (300-412)||(47235424-47235536)
chr3 (440-527)||(27398805-27398891)
chr3 (286-380)||(1653175-1653267)
chr3 (300-342)||(45163557-45163599)
chr3 (51-114)||(14755779-14755843)
[»] chr7 (22 HSPs)
chr7 (270-562)||(34389642-34389931)
chr7 (166-412)||(42533514-42533753)
chr7 (297-549)||(3419782-3420032)
chr7 (265-512)||(8744828-8745071)
chr7 (177-527)||(16954242-16954586)
chr7 (297-397)||(33434814-33434916)
chr7 (300-380)||(25160525-25160605)
chr7 (300-412)||(47326146-47326257)
chr7 (230-340)||(6584702-6584810)
chr7 (302-384)||(6717019-6717103)
chr7 (297-342)||(10243893-10243938)
chr7 (309-398)||(37794719-37794808)
chr7 (251-340)||(1320455-1320544)
chr7 (460-549)||(37794865-37794955)
chr7 (455-512)||(33434970-33435027)
chr7 (297-342)||(38305967-38306012)
chr7 (455-526)||(5860438-5860509)
chr7 (455-517)||(3866977-3867038)
chr7 (284-389)||(9106861-9106964)
chr7 (489-562)||(35745939-35746012)
chr7 (467-527)||(11379275-11379335)
chr7 (458-549)||(38306124-38306216)
[»] chr5 (15 HSPs)
chr5 (230-379)||(26046257-26046405)
chr5 (181-383)||(13954521-13954721)
chr5 (297-393)||(29087254-29087350)
chr5 (206-369)||(8297091-8297255)
chr5 (18-91)||(13954866-13954939)
chr5 (473-541)||(8297347-8297415)
chr5 (455-549)||(698221-698316)
chr5 (457-519)||(24072422-24072484)
chr5 (297-342)||(18592949-18592994)
chr5 (455-549)||(18593103-18593198)
chr5 (467-549)||(13954359-13954441)
chr5 (489-549)||(7392157-7392217)
chr5 (317-380)||(7392321-7392385)
chr5 (163-207)||(7392471-7392515)
chr5 (284-367)||(24072568-24072649)
[»] scaffold0063 (3 HSPs)
scaffold0063 (158-379)||(57761-57981)
scaffold0063 (18-112)||(57519-57612)
scaffold0063 (467-527)||(58000-58060)
[»] scaffold0119 (1 HSPs)
scaffold0119 (215-382)||(42429-42597)
[»] chr4 (14 HSPs)
chr4 (457-562)||(2825648-2825752)
chr4 (158-552)||(19672672-19673059)
chr4 (300-527)||(8254736-8254959)
chr4 (300-527)||(8268154-8268377)
chr4 (297-512)||(30964147-30964358)
chr4 (221-339)||(38639744-38639860)
chr4 (298-412)||(4305432-4305545)
chr4 (457-519)||(12296038-12296100)
chr4 (465-559)||(31050777-31050871)
chr4 (285-367)||(31050966-31051048)
chr4 (457-527)||(46698933-46699002)
chr4 (467-542)||(22811292-22811367)
chr4 (478-551)||(19815348-19815421)
chr4 (457-517)||(4305587-4305647)
[»] scaffold0068 (1 HSPs)
scaffold0068 (308-546)||(35901-36136)
[»] chr6 (6 HSPs)
chr6 (250-394)||(20702081-20702225)
chr6 (297-412)||(16510554-16510668)
chr6 (465-562)||(15132635-15132732)
chr6 (317-398)||(3117219-3117300)
chr6 (458-511)||(32935503-32935556)
chr6 (458-510)||(3117355-3117407)
[»] scaffold0050 (1 HSPs)
scaffold0050 (223-365)||(36335-36479)
[»] scaffold1613 (1 HSPs)
scaffold1613 (457-527)||(1164-1234)
[»] scaffold0062 (1 HSPs)
scaffold0062 (284-340)||(46787-46843)


Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 7857079 - 7857622
Alignment:
Q  18 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggccgtgggcttcagattctgcttgttttggtggcagactccccgaggtcactgtgtgtttcg 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7857079 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggtcgtgggcttcagattctgcttgttttggtggcagactccccgaggtcactgtgtgtttcg 7857178  T
Q  118 ttttgtactatttcgatgttgtattctgctgtgtggtggtgatgcgtggttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaagggg 217  Q
    |||| ||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7857179 ttttttactacttcgatgttgtattctgttgtgtggtggtggtgcgtggttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaatggg 7857278  T
Q  218 agatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7857279 agatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggg-tgactcctttttggaggctggctctgttactcgggtccatgt 7857377  T
Q  318 tcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgac 417  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7857378 tcgtcgtcactagctcttgtttgcgtctttggggttgtcaaggtgtttagggtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgac 7857477  T
Q  418 tgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  7857478 tgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgggccgattatttttgcttcgagatcgggagt 7857577  T
Q  518 tgatgtctagttggaattatgtttgacttgatatgttgttctctg 562  Q
    || |||||||||| |||||||||||||||||||||||||||||||    
T  7857578 tggtgtctagttgcaattatgtttgacttgatatgttgttctctg 7857622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 309 - 562
Target Start/End: Original strand, 24658645 - 24658898
Alignment:
Q  309 ggtccatg-ttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgt-ttgatcctt 406  Q
    |||||||| |||||||||||| ||||||||| | | |||| |||||||  || ||||||| |||||||||||| |||||||||||||||| || | ||||    
T  24658645 ggtccatgattcgtcgtcacttgctcttgttggcg-cttttgggttgtttagatgtttagggtgtttggagggtgtgtgtcccgttgtgtgttaagcctt 24658743  T
Q  407 ttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcg 506  Q
    ||||||||||||  |||||| | || |||||||||||||||| || ||||||||||||| |||||||||||  ||| ||| ||||||||||||||||||     
T  24658744 ttccttgtgactagtttgttttttggaccaatcgcatatcat-gtctatcgtcttacattttgtgtgctggagtccggtgggccggttatttttgcttca 24658842  T
Q  507 agatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctg 562  Q
    |||||| |||||| ||||||| || ||| ||||||||||||||||| |||||||||    
T  24658843 agatcgggagttggtgtctagctgcaatcatgtttgacttgatatggtgttctctg 24658898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 307 - 562
Target Start/End: Complemental strand, 46814831 - 46814579
Alignment:
Q  307 cgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatcctt 406  Q
    |||||||||||| ||||||||| ||||||||| | | |||| |||||||  |||||||||| |||||||||||| | ||||||||||||| |||| ||||    
T  46814831 cgggtccatgtttgtcgtcacttgctcttgttggcg-cttttgggttgtttaggtgtttagggtgtttggagggtgcgtgtcccgttgtggttgagcctt 46814733  T
Q  407 ttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcg 506  Q
    ||||||||||||  |||||||| |||||||||| ||||||| ||| || | ||||| || |||| ||||||| |||  || |||||||||||||| ||||    
T  46814732 ttccttgtgactattttgttgtttgcaccaatcacatatca-tgtctaccatcttatat-ttgtttgctggtgtccgatgggccggttatttttgattcg 46814635  T
Q  507 agatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctg 562  Q
    ||||||||||||| |||||||||| |||  |||||||||||||||| |||||||||    
T  46814634 agatcgagagttggtgtctagttgcaatcctgtttgacttgatatggtgttctctg 46814579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 298 - 512
Target Start/End: Complemental strand, 27032237 - 27032025
Alignment:
Q  298 tctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgt 397  Q
    ||||| || ||||||  |||||||||||||| |||||||||   | |||| |||||||  |||||| ||| |||||||||||| ||||||||||||||||    
T  27032237 tctgtgacacgggtctttgttcgtcgtcacttgctcttgttatcg-cttttgggttgtttaggtgtgtagggtgtttggagggtgtgtgtcccgttgtgt 27032139  T
Q  398 ttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatt 497  Q
    |||| | ||||||||||||||| || ||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||| |||  |  |||| |||||    
T  27032138 ttgagcattttccttgtgactggttggttgtttgcaccaattgcatatca-tgtctatcgtcttacatattgtgtgctggtgtccgatcggccgattatt 27032040  T
Q  498 tttgcttcgagatcg 512  Q
    |||||||||||||||    
T  27032039 tttgcttcgagatcg 27032025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 382
Target Start/End: Complemental strand, 10785748 - 10785617
Alignment:
Q  251 tgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgtt-cgtcgtcactagctcttgtttgtgtctttgg 349  Q
    |||||||| | || ||| |||||||||| | ||||| |||||||| |||||||||| |||||   ||| ||||||||||| | ||||||||  | |||||    
T  10785748 tgaggaggcaagtgtttattgggggtgatttctttt-ggaggctgcctctgttacttgggtcttggtttcgtcgtcactaacccttgtttgcatttttgg 10785650  T
Q  350 ggttgtcaaggtgtttagagtgtttggagggag 382  Q
    |||||| ||||||||||| ||||||||||||||    
T  10785649 ggttgttaaggtgtttagggtgtttggagggag 10785617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 365
Target Start/End: Original strand, 16147202 - 16147341
Alignment:
Q  223 tataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtc 322  Q
    ||||||| ||||| ||||||| ||||||||||||||  ||| ||  |||||| ||| | | ||| |||||| | ||||||||| |||| |||||||||||    
T  16147202 tataagatggtggttggtgttgtttaggtgaggaggtgggtgttgcttgggg-tgatttccttt-ggaggcagcctctgttacacgggcccatgttcgtc 16147299  T
Q  323 gtcactagctcttgtttgtgtctttggggttgtcaaggtgttt 365  Q
    ||||||||||||| |||| || ||| ||||||| |||||||||    
T  16147300 gtcactagctcttatttgcgt-ttttgggttgttaaggtgttt 16147341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 298 - 526
Target Start/End: Complemental strand, 30686278 - 30686054
Alignment:
Q  298 tctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgt 397  Q
    |||||||| || |||||||||||| ||||||||||||||||||||  ||| |||| ||  |||||||||  | ||||||||||   ||||| |||||||     
T  30686278 tctgttacacgagtccatgttcgttgtcactagctcttgtttgtgctttttgggtggtttaggtgtttacggagtttggagggttcgtgtcacgttgtg- 30686180  T
Q  398 ttgatccttttccttgtga-ctgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttat 496  Q
    |||| |||||||||| ||| ||| |||||||| |  ||   |||| || | |||| | ||||||||||||||||||| |||||| | ||| |||||||      
T  30686179 ttgagccttttccttttgatctg-tttgttgtttaaac--ttcgctta-ccttgtctttcgtcttacatattgtgtgttggttttcggtgggccggttca 30686084  T
Q  497 ttttgcttcgagatcgagagttgatgtcta 526  Q
    ||| |||||||||||| |||| || |||||    
T  30686083 tttggcttcgagatcgggagtcgaggtcta 30686054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 297 - 412
Target Start/End: Complemental strand, 31586136 - 31586021
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttg-tttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgt 395  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||||||  ||| |||| ||  ||||||||| || |||||||||| | ||||| |||| |    
T  31586136 ctctgttacacgggtccatgttcgtcgtcactggctcttgttttgtgctttttgggtggtttaggtgtttacagagtttggagggtgcgtgtcacgttat 31586037  T
Q  396 gtttgatccttttcctt 412  Q
    | |||| ||||||||||    
T  31586036 g-ttgagccttttcctt 31586021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 527
Target Start/End: Complemental strand, 38544955 - 38544885
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    ||||||||||||||||||||| ||| |||| |||| ||| |||||||||||||| | |||||| |||||||    
T  38544955 gtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctag 38544885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 46693194 - 46693104
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgt 387  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||  ||| ||||  |  |||||||||  | |||||||||| ||||||    
T  46693194 ctctgttacacgggtacatgttcgtcgtcactagctcttgtttgtgcttttcgggtgttttaggtgtttacggagtttggagggtgtgtgt 46693104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 27102003 - 27102059
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttg 340  Q
    |||||||||| | ||||||||||||||||| | ||||||||||| ||||||||||||    
T  27102003 ttttggaggcggcctctgttactcgggtccttcttcgtcgtcacgagctcttgtttg 27102059  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 366
Target Start/End: Original strand, 52278146 - 52278279
Alignment:
Q  230 gggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcacta 329  Q
    |||| ||| ||||| |||||||||||||| |||| |||||||||| ||| |  | ||||||||  | || |||| | |||||||||||||||||| ||||    
T  52278146 gggtagctagtgttgtttaggtgaggaggcaggtgtttgttgggg-tgattt-tctttggaggaagcctttgtttcacgggtccatgttcgtcgttacta 52278243  T
Q  330 gctcttgtttgtgtctttggggttgtcaaggtgttta 366  Q
    ||||||||| | || ||| ||||||| ||||||||||    
T  52278244 gctcttgttggcgt-ttttgggttgttaaggtgttta 52278279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 5389639 - 5389580
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagt 517  Q
    ||||||||||||||||||||||| ||||| |||||||  ||| |||||||||||| ||||    
T  5389639 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagt 5389580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 50589423 - 50589368
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcg 512  Q
    ||||||||||||||||||||| |||  ||| |||||||| ||||||||||||||||    
T  50589423 gtcttacatattgtgtgctggattctggtgggccggttaattttgcttcgagatcg 50589368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 10785540 - 10785490
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagt 517  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||| ||||    
T  10785540 ttgtgtgctggtttccggtgggccggttaattttgcttcgagatcgggagt 10785490  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 41920186 - 41920228
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgttt 339  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  41920186 ctctattacacgggtccatgttcgtcgtcactagctcttgttt 41920228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 530
Target Start/End: Original strand, 17033449 - 17033522
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttg 530  Q
    ||||||| ||||||||||||| |||  ||| |||||||| ||||| ||||||||||||| |||  |||||||||    
T  17033449 gtcttacttattgtgtgctggattctggtgggccggttacttttgtttcgagatcgagaattggcgtctagttg 17033522  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 549
Target Start/End: Complemental strand, 46693038 - 46692945
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    ||||||||||||||||||| |||| | ||| |||| ||  ||| |||||||||||| |||| || ||||||||| ||| | |||||||||||||    
T  46693038 gtcttacatattgtgtgctagttttcggtgggccgattcatttggcttcgagatcgggagtcgaggtctagttgcaatctttgtttgacttgat 46692945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 416
Target Start/End: Complemental strand, 24684840 - 24684733
Alignment:
Q  308 gggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttt 407  Q
    |||||| ||||| |||||||||||||||||||||| |||| |||| ||  ||| || ||    |||||||||| ||||||||| |||||  ||| |||||    
T  24684840 gggtccttgttcatcgtcactagctcttgtttgtgccttttgggtggtttaggagtctacgaagtttggagggtgtgtgtccctttgtg-atgagccttt 24684742  T
Q  408 tccttgtga 416  Q
    |||||||||    
T  24684741 tccttgtga 24684733  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 549
Target Start/End: Original strand, 41920313 - 41920408
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    ||||||||||||||||||||| |||| | ||| |||||||  ||| |||||||||||| |||| |  |||||| || ||| | |||||||||||||    
T  41920313 tcgtcttacatattgtgtgctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgat 41920408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 9313649 - 9313518
Alignment:
Q  250 gtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtcttt-- 347  Q
    |||||||||| ||  |||||||||||||| | | ||||| |||| | || ||||||| |||||| |||| ||||||| |||||||||| || || |||      
T  9313649 gtgaggaggagggcgtttgttgggggtgatttc-ttttgaaggcagcctttgttacttgggtccttgtttgtcgtcaatagctcttgtatgcgttttttt 9313551  T
Q  348 -ggggttgtcaaggtgtttagagtgtttggagg 379  Q
     |||||||  ||||||||||  |||||||||||    
T  9313550 gggggttgctaaggtgtttatggtgtttggagg 9313518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 20113893 - 20113851
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||    
T  20113893 tgttacacgggttcatgttcgtcgtctctagctcttgtttgtg 20113851  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 24450296 - 24450262
Alignment:
Q  308 gggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    |||||||||||||||||| ||||||||||||||||    
T  24450296 gggtccatgttcgtcgtctctagctcttgtttgtg 24450262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 9e-56; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 238 - 561
Target Start/End: Original strand, 7873947 - 7874259
Alignment:
Q  238 ggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgt 337  Q
    |||||| |||| |||||||||| ||| |||||||||||||| |   ||||||||||    |||||| | ||||||| ||| | |||||||| ||||||||    
T  7873947 ggtgttgtttacgtgaggaggagggt-tttgttgggggtgagttacttttggaggcaacatctgtttcacgggtccttgtccatcgtcacttgctcttgt 7874045  T
Q  338 ttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaa 437  Q
    | ||| |||| |||||||        |||| ||||||||| || ||||||||||||||||||||  |||||||||||||||| |||||||| ||||||||    
T  7874046 tggtg-cttttgggttgt--------ttagggtgtttggatggtgtgtgtcccgttgtgtttgagtcttttccttgtgactggtttgttgtttgcaccaa 7874136  T
Q  438 tcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattat 537  Q
    |||||||||| ||| |||||||||| ||||||||||||||| ||| ||| ||||||| ||||||||||||||||| |||||| ||||||| || |||  |    
T  7874137 tcgcatatca-tgtctatcgtcttaaatattgtgtgctggtgtccggtgggccggttttttttgcttcgagatcgggagttggtgtctagctgcaatcct 7874235  T
Q  538 gtttgacttgatatgttgttctct 561  Q
    | ||||||||||||| ||||||||    
T  7874236 gcttgacttgatatggtgttctct 7874259  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 215 - 382
Target Start/End: Original strand, 1269105 - 1269273
Alignment:
Q  215 gggagatttataagagggtggctggtgtttt-ttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtcc 313  Q
    ||||| |||||||| |||| |||| |||| | |||||||||||||  ||| |||||||||||||| | ||| | ||||| || |||| ||||||||||||    
T  1269105 gggagctttataagggggttgctgatgttatgttaggtgaggaggcgggtgtttgttgggggtgatttcttct-ggaggttgcctctattactcgggtcc 1269203  T
Q  314 atgtt-cgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggag 382  Q
     |||| |||||||||||||||||||||| || ||||||||||| || |||||||  ||||||||||||||    
T  1269204 ttgtttcgtcgtcactagctcttgtttgcgtttttggggttgttaaagtgtttatggtgtttggagggag 1269273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 225 - 510
Target Start/End: Original strand, 17105047 - 17105327
Alignment:
Q  225 taagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgt 324  Q
    |||| ||||||| |||||| ||||||||||||||   || |||||||||| ||| | | ||| |||||| | ||||| ||| | ||||||||||||||||    
T  17105047 taagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttgggg-tgatttccttt-ggaggcagcctctgctacacaggtccatgttcgtcgt 17105144  T
Q  325 cactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttg 424  Q
    ||||||||||| ||||    |||  || ||| ||||||||||| |||||| ||||| |  |||||||||||| | || |||||||||| ||| |  ||||    
T  17105145 cactagctcttatttgcacttttttggctgttaaggtgtttagggtgtttagagggtgcttgtcccgttgtgat-gagccttttccttttgatttgtttg 17105243  T
Q  425 ttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagat 510  Q
     ||| ||||||| || |||||||| || | || ||||||||||||||||||||||||| ||| | |||||| |||||||| |||||    
T  17105244 gtgtttgcacca-tctcatatcat-gtctttcatcttacatattgtgtgctggtttccggtgggtcggttacttttgcttggagat 17105327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 227 - 379
Target Start/End: Complemental strand, 37771088 - 37770934
Alignment:
Q  227 agagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtca 326  Q
    ||||||||| ||||||| ||||||||||||||  ||| ||||||| |||||| | || || |||||||| |||| | |||||||||| ||||||||||||    
T  37771088 agagggtggttggtgttgtttaggtgaggaggcgggtgtttgttgagggtgatttctgtt-ggaggctgcctctataactcgggtccttgttcgtcgtca 37770990  T
Q  327 ctagctcttgttt--gtgtctttggggttgtcaaggtg-tttagagtgtttggagg 379  Q
    |||||| ||||||  || | ||||||||||| |||||| ||||| |||||||||||    
T  37770989 ctagcttttgtttgcgtttttttggggttgttaaggtgttttagggtgtttggagg 37770934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 394
Target Start/End: Complemental strand, 41087208 - 41087064
Alignment:
Q  250 gtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttg 348  Q
    |||||||||  ||| |||||||||||||| | ||||| |||| | | ||||||||||||||||| | |||||||| |||||||||||| || | | ||||    
T  41087208 gtgaggaggcgggtgtttgttgggggtgatttctttt-ggagtcagcctctgttactcgggtccttattcgtcgttactagctcttgtatgcgttttttg 41087110  T
Q  349 gggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttg 394  Q
    ||||||| ||||||| ||| ||||||||||| || | |||||||||    
T  41087109 gggttgttaaggtgtctagggtgtttggaggtagcgggtcccgttg 41087064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 299 - 412
Target Start/End: Complemental strand, 39339238 - 39339126
Alignment:
Q  299 ctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtt 398  Q
    ||||||| |||||||||||||||||| |||||||||||||||||  ||| |||| ||  |||||||||    |||||||||| ||||||| ||||||| |    
T  39339238 ctgttacacgggtccatgttcgtcgttactagctcttgtttgtgctttttgggtggtttaggtgtttacgaagtttggagggtgtgtgtcacgttgtg-t 39339140  T
Q  399 tgatccttttcctt 412  Q
    ||| ||||||||||    
T  39339139 tgagccttttcctt 39339126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 367
Target Start/End: Original strand, 7695762 - 7695844
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttag 367  Q
    |||| ||||||| ||||||||||||||||| ||||||  ||| ||||||||| |||| || ||| ||||||| |||||||||||    
T  7695762 ttttagaggctgcctctgttactcgggtccttgttcgctgtccctagctctt-tttgcgttttttgggttgttaaggtgtttag 7695844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 7873708 - 7873766
Alignment:
Q  51 cggtggccgtgg-gcttcagattctgcttgttttggtggcagactccccgaggtcactg 108  Q
    |||||||||||| |||| ||||| |||||||||||||||||||| ||||||| ||||||    
T  7873708 cggtggccgtggtgctttagattttgcttgttttggtggcagaccccccgagatcactg 7873766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 14106912 - 14106846
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggg 350  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||  |||| || |||| ||||||    
T  14106912 ttttggaggctgcttctgttactcgggtccatggtcgtcgtcactaattcttattggtgtttttggg 14106846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 10523819 - 10523904
Alignment:
Q  313 catgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtt 398  Q
    ||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||  | ||||| |||| | ||||| |||||||||    
T  10523819 catgttcgtcgtcactagctcttgtttgtgcttttcgggtggtttaggtgtttacggagtttgtagggtgcgtgtcacgttgtgtt 10523904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 549
Target Start/End: Complemental strand, 39339086 - 39338991
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    |||||||||||||||||||||||||| | ||| ||| |||  ||| |||||||||||| |||| |  |||||| || ||| | |||||||||||||    
T  39339086 tcgtcttacatattgtgtgctggttttcggtgggccagttcatttggcttcgagatcgggagtcggggtctagctgcaatatttgtttgacttgat 39338991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 558
Target Start/End: Complemental strand, 14106734 - 14106641
Alignment:
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttc 558  Q
    ||||||||| |||||||| ||| |||||||| |||||||||||||  | |||| | || |||| || |||  ||||||||||||| || |||||    
T  14106734 tattgtgtgttggtttccggtgggccggttacttttgcttcgagacagggagtcggtgactagctgcaatcctgtttgacttgatttggtgttc 14106641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 16952600 - 16952539
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagtt 518  Q
    |||||||||||||||||||||||| |  ||  | ||||| |||| |||||||||||||||||    
T  16952600 gtcttacatattgtgtgctggttttcgatggactggttacttttacttcgagatcgagagtt 16952539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 17023265 - 17023204
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagtt 518  Q
    |||||||||||||||||||||||| |  ||  | ||||| |||| |||||||||||||||||    
T  17023265 gtcttacatattgtgtgctggttttcgatggactggttacttttacttcgagatcgagagtt 17023204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 17060571 - 17060510
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagtt 518  Q
    |||||||||||||||||||||||| |  ||  | ||||| |||| |||||||||||||||||    
T  17060571 gtcttacatattgtgtgctggttttcgatggactggttacttttacttcgagatcgagagtt 17060510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Original strand, 17079033 - 17079094
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagtt 518  Q
    |||||||||||||||||||||||| |  ||  | ||||| |||| |||||||||||||||||    
T  17079033 gtcttacatattgtgtgctggttttcgatggactggttacttttacttcgagatcgagagtt 17079094  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 549
Target Start/End: Original strand, 10523960 - 10524052
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    ||||||||||||||||||||||| | |||  ||||||  ||| |||||||||||| |||| |   |||||||| ||| | |||||||||||||    
T  10523960 tcttacatattgtgtgctggttttcggtggaccggttcatttggcttcgagatcgggagtcgggctctagttgcaatctttgtttgacttgat 10524052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 527
Target Start/End: Complemental strand, 37770849 - 37770789
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    |||| ||||||||  | ||| |||||||| |||||||||||||||| |||||| |||||||    
T  37770849 ttgtttgctggttatcggtgggccggttacttttgcttcgagatcgggagttggtgtctag 37770789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 206 - 562
Target Start/End: Complemental strand, 15821844 - 15821491
Alignment:
Q  206 tttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttac 305  Q
    |||||| | ||||| | |||||| | ||||||| |||| ||||||||||||||  ||| |||||||||| ||| | |||||||||||| | |||| || |    
T  15821844 tttgcggacgggagctatataagggagtggctgatgttgtttaggtgaggaggcgggtgtttgttgggg-tgatttctttttggaggcagcctctatttc 15821746  T
Q  306 tcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatcct 405  Q
      |||||||| || ||||||||  ||||||||| | | |||| | |||||  ||||| | ||  ||||||||||| | |||||| ||||||||||| |||    
T  15821745 atgggtccatatttgtcgtcacgtgctcttgttggcg-cttttgagttgtttaggtgctaaggttgtttggagggtgcgtgtcctgttgtgtttgagcct 15821647  T
Q  406 tttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttc 505  Q
    |||||||||||||| |||||||| |||||||||| ||||||| ||| ||||||||||||||||||||| |||| ||  ||| |||| |||||||| |||     
T  15821646 tttccttgtgactggtttgttgtttgcaccaatcacatatca-tgtctatcgtcttacatattgtgtgttggtatctggtgggccgattattttttcttt 15821548  T
Q  506 gagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctg 562  Q
    |||||||  ||||| || |||| |  |||  |||||| ||||||||| |||||||||    
T  15821547 gagatcggaagttggtgcctagctacaatcctgtttggcttgatatggtgttctctg 15821491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 237 - 382
Target Start/End: Complemental strand, 10248985 - 10248842
Alignment:
Q  237 tggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttg 336  Q
    ||||||| ||||||||||||||| ||| |||| ||||| ||| | ||| | ||||| || | ||||||||||||||| | ||||||||||||||||||||    
T  10248985 tggtgttgtttaggtgaggaggagggtgtttgctgggg-tgatttcttct-ggaggttgtcgctgttactcgggtccttattcgtcgtcactagctcttg 10248888  T
Q  337 tttgtgtctttggggttgtcaaggtgtttagagtgtttggagggag 382  Q
    |||| || ||| || |||| ||||||||||  ||||||||||||||    
T  10248887 tttgagttttttggattgttaaggtgtttaaggtgtttggagggag 10248842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 512
Target Start/End: Complemental strand, 37987223 - 37987022
Alignment:
Q  308 gggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttt 407  Q
    |||| ||||||||||||||||||||||||||||||| ||| |||| ||  |||||||||  | ||| |||||| | ||||| |||||||||||| |||||    
T  37987223 gggtacatgttcgtcgtcactagctcttgtttgtgtttttcgggtggtttaggtgtttacggagttaggagggtgcgtgtcacgttgtgtttgagccttt 37987124  T
Q  408 tccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcga 507  Q
    || || ||| |  |||||||  | ||    ||||||  || ||| | |||||||||||||||||||||||||| | ||| |||||||  ||| |||||||    
T  37987123 tctttttgatttgtttgttg--ttcaaacttcgcatgcca-tgtctttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcga 37987027  T
Q  508 gatcg 512  Q
    |||||    
T  37987026 gatcg 37987022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 379
Target Start/End: Complemental strand, 17657447 - 17657298
Alignment:
Q  229 agggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcact 328  Q
    |||||||||| |||| ||||||||||||||  | | || ||||| ||||| |   |||||||||||| |||||||| |||||||| |||| || ||||||    
T  17657447 agggtggctgatgttgtttaggtgaggaggcggatgttcgttggaggtga-tttgttttggaggctgcctctgttattcgggtccttgtttgttgtcact 17657349  T
Q  329 agctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagg 379  Q
    ||||||||||||  | ||||||  ||| ||||||||||  |||||||||||    
T  17657348 agctcttgtttgcatttttgggactgttaaggtgtttatggtgtttggagg 17657298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 34389353 - 34389302
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttg 348  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  34389353 ctctgttacacgggtccatgttcgtcgtcactagctcttgtttgtgtttttg 34389302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 297 - 416
Target Start/End: Original strand, 36630543 - 36630661
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||| ||  ||| || ||  | |||||||||| | ||||||  |||||    
T  36630543 ctctgttacacgggtccttgttcgtcgtcactagctcttgtttgtgccttttgggtggtttaggagtctacggagtttggagggtgcgtgtccttttgtg 36630642  T
Q  397 tttgatccttttccttgtga 416  Q
     |||| ||||||||||||||    
T  36630643 -ttgaaccttttccttgtga 36630661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 549
Target Start/End: Complemental strand, 24995622 - 24995521
Alignment:
Q  449 tgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttg 547  Q
    ||||| |||||||||||||||||||||||||| | ||| |||||||  ||| |||||||||||| |||| |  |||||| || ||| | |||||||||||    
T  24995622 tgtttttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttg 24995523  T
Q  548 at 549  Q
    ||    
T  24995522 at 24995521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 549
Target Start/End: Original strand, 9519359 - 9519454
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    |||||||||||||||||||||||||| ||||  |||||||  ||| |||||||||||| |||| |  |||||| || ||| | |||||||||||||    
T  9519359 tcgtcttacatattgtgtgctggttttcagtaggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgat 9519454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 549
Target Start/End: Complemental strand, 10248761 - 10248679
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgat 549  Q
    ||||||| |||||||| ||| ||| |||| |||||||||||||||| |||| | ||||||| || |||| |||||| ||||||    
T  10248761 ttgtgtggtggtttccggtgggccagttacttttgcttcgagatcgggagtcggtgtctagctgcaattttgtttggcttgat 10248679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 32066670 - 32066625
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    |||||||||  |||| ||||||||||||||||||||||||||||||    
T  32066670 ctctgttacatgggtacatgttcgtcgtcactagctcttgtttgtg 32066625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 10249061 - 10248998
Alignment:
Q  18 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggccgtgggcttcagattctgcttgtt 81  Q
    |||||||||||| |||||| ||||||||||   ||||||  |||||||||||||| ||||||||    
T  10249061 gtaaggatcgtggtggttggggtttgttcgcaccggtggttgtgggcttcagattttgcttgtt 10248998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 549
Target Start/End: Complemental strand, 32066516 - 32066421
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    |||||||||||||||||||||||||| | ||| |||||||  ||| |||| ||||||| || | |  ||||||||| ||| | |||||||||||||    
T  32066516 tcgtcttacatattgtgtgctggttttcggtgggccggttcatttggctttgagatcgggattcggggtctagttgcaatctttgtttgacttgat 32066421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 519
Target Start/End: Complemental strand, 17720921 - 17720860
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttg 519  Q
    |||||||| ||||||||||| |||  ||| |||| ||| |||||||| ||||||||||||||    
T  17720921 tcttacattttgtgtgctggattctggtgggccgattacttttgctttgagatcgagagttg 17720860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 34866414 - 34866370
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgt 341  Q
    ||||||||| ||||| |||||||||||||| ||||||||| ||||    
T  34866414 ctctgttacacgggttcatgttcgtcgtcaatagctcttggttgt 34866370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 270 - 561
Target Start/End: Complemental strand, 40023967 - 40023684
Alignment:
Q  270 tgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagag 369  Q
    ||||||||| ||||||| |||| ||| ||||||| ||||||||| |||||||| ||||||||||| |||| | | ||  ||||||| ||||||||||  |    
T  40023967 tgggggtgattcctttt-ggag-ctgactctgttgctcgggtccttgttcgtcctcactagctctcgtttttttgtt--gggttgttaaggtgtttaagg 40023872  T
Q  370 tgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattg 469  Q
    ||||||||||| | |||||| |||||| | || |||||||||| |   |   ||||||| ||||||||||||| ||||| || |||||||||||||||||    
T  40023871 tgtttggagggtgcgtgtcc-gttgtgat-gagccttttccttttt--ttgcttgttgtttgcaccaatcgcacatcat-gtctatcgtcttacatattg 40023777  T
Q  470 tgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatg-tttgacttgatatgttgttctct 561  Q
    |||  |||| ||| |||  ||||||||||||||||||||||||  ||||| ||||||| || ||| ||| |||||||||||||| ||||||||    
T  40023776 tgtattggtgtccggtggaccggttatttttgcttcgagatcggaagttggtgtctagctgcaatcatgttttgacttgatatggtgttctct 40023684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 237 - 379
Target Start/End: Original strand, 37123037 - 37123179
Alignment:
Q  237 tggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttg 336  Q
    ||||||| |||||||||||||| |||| ||||||| |||||| | ||||  |||||| | ||||| ||||||||||| ||||||||||||||||||||||    
T  37123037 tggtgttgtttaggtgaggaggcaggtgtttgttgagggtgatttctttc-ggaggcggcctctggtactcgggtccttgttcgtcgtcactagctcttg 37123135  T
Q  337 tttgtg-tctttggggttgtcaaggtgtttagagtgtttggagg 379  Q
    |||||| | ||||||||||| |||| |||||| |||||||||||    
T  37123136 tttgtgttttttggggttgttaaggagtttagggtgtttggagg 37123179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 453 - 562
Target Start/End: Complemental strand, 23328569 - 23328462
Alignment:
Q  453 tatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatg 552  Q
    |||||||||||||||||||||||||| |||  || |||||||  |||||||||||||||| |||||| ||||||| || |||| ||||||||||||||||    
T  23328569 tatcgtcttacatattgtgtgctggtgtccgatgggccggtt--ttttgcttcgagatcgggagttggtgtctagctgcaattttgtttgacttgatatg 23328472  T
Q  553 ttgttctctg 562  Q
     |||||||||    
T  23328471 gtgttctctg 23328462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 177 - 379
Target Start/End: Complemental strand, 4464430 - 4464229
Alignment:
Q  177 tttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggt 276  Q
    |||||||||| ||||||||||||| ||||||  || | || ||  |||||||||||||||||||||| |||||||||| |||  ||| |||| ||||| |    
T  4464430 tttggactcgaatctggtgtcggagcggttta-cggacggaagcgttataagagggtggctggtgttgtttaggtgagtaggcgggtgtttgatgggg-t 4464333  T
Q  277 gactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttggggttgtcaaggtgtttagagtgtttg 375  Q
    || | |||||| ||||||| |||||||| | | |||| |||| ||||||||||||| ||||||| | | |||||||||||  |||||||||  | |||||    
T  4464332 gatttctttttagaggctgactctgttaatggagtccttgtttgtcgtcactagcttttgtttgcgttttttggggttgtttaggtgtttatggagtttg 4464233  T
Q  376 gagg 379  Q
    ||||    
T  4464232 gagg 4464229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 436
Target Start/End: Original strand, 25647391 - 25647527
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtt 398  Q
    |||||||||||||| |||||||||||||||||||||||| ||| | |||  |||||| ||||||||||| ||||||||||| || | ||||||||| | |    
T  25647391 tgttactcgggtccttgttcgtcgtcactagctcttgttcgtgatttttaaggttgttaaggtgtttagggtgtttggaggaagcgagtcccgttgag-t 25647489  T
Q  399 tgatccttttccttgtgactgatttgttgtctgcacca 436  Q
    ||  |||||||||| ||||   |||||||| |||||||    
T  25647490 tgtgccttttccttttgacctgtttgttgtttgcacca 25647527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 14193646 - 14193741
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttg 394  Q
    |||||||||||||| | |||||||||||||||||||||| | | | ||||||||||| ||||||||||| || |||||||| || | |||||||||    
T  14193646 tgttactcgggtccttattcgtcgtcactagctcttgttcgcgatttttggggttgttaaggtgtttagggtttttggaggaagcgagtcccgttg 14193741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 397
Target Start/End: Original strand, 19176212 - 19176309
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgt 397  Q
    |||||| ||||||  ||||| |||||||||||||||||||||| |||| || | ||  |||||||||  | |||||||||||||||||||| ||||||    
T  19176212 tgttacacgggtctttgttcatcgtcactagctcttgtttgtgccttttggatggtttaggtgtttacggagtttggagggagtgtgtccctttgtgt 19176309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 20611489 - 20611603
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    ||||||||| |||||||||||| ||||| |||||||||||||||||  ||| |||| ||  |||||||||    |||||||||| | ||||| |||||||    
T  20611489 ctctgttacacgggtccatgtttgtcgttactagctcttgtttgtgctttttgggtagtttaggtgtttacgaagtttggagggtgcgtgtcacgttgtg 20611588  T
Q  397 tttgatccttttcctt 412  Q
     |||| ||||||||||    
T  20611589 -ttgagccttttcctt 20611603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 412
Target Start/End: Complemental strand, 34476125 - 34476015
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| ||||||||||||||||||| ||||||||||||||||  ||| | || ||  |||||||||  | |||||||||| | ||||| |||  |||||    
T  34476125 tgttacacgggtccatgttcgtcgtctctagctcttgtttgtgctttttgagtggtttaggtgtttacggagtttggagggtgggtgtcacgt--tgttt 34476028  T
Q  400 gatccttttcctt 412  Q
    || ||||||||||    
T  34476027 gagccttttcctt 34476015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 412
Target Start/End: Original strand, 47235424 - 47235536
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg-tctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtt 398  Q
    |||||| ||||||||||||| ||||| |||||||||||||||| | ||| |||| ||  |||||||||  | |||||||||| | ||||| ||||||| |    
T  47235424 tgttacacgggtccatgttcatcgtctctagctcttgtttgtgtttttttgggtggtttaggtgtttacggagtttggagggtgcgtgtcacgttgtg-t 47235522  T
Q  399 tgatccttttcctt 412  Q
    ||| ||||||||||    
T  47235523 tgagccttttcctt 47235536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 527
Target Start/End: Original strand, 27398805 - 27398891
Alignment:
Q  440 gcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    ||||||||| ||| || ||||||||||||||||||||| |||  |||  || ||||||||||||||||||||| |||||  |||||||    
T  27398805 gcatatcat-gttgattgtcttacatattgtgtgctggattctggtgcaccagttatttttgcttcgagatcgggagtttgtgtctag 27398891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 1653267 - 1653175
Alignment:
Q  286 ttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggaggg 380  Q
    ||||||| || |||||||| ||||||||||  |||| ||| |||||||||||||| |  |||  |||||| | |||||||||||||||| |||||    
T  1653267 ttggaggttgcctctgttattcgggtccatactcgttgtcgctagctcttgtttgag--ttttaggttgttatggtgtttagagtgttttgaggg 1653175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 45163557 - 45163599
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||    
T  45163557 tgttacacgggtccatgttcgtcgtctctaactcttgtttgtg 45163599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 14755843 - 14755779
Alignment:
Q  51 cggtggccgtgg-gcttcagattctgcttgttttggtggcagactccccgaggtcactgtgtgtt 114  Q
    |||||||||||| |||||||||| | ||  ||||||||| |||| ||||||||||||| ||||||    
T  14755843 cggtggccgtggtgcttcagattttactctttttggtggaagaccccccgaggtcactctgtgtt 14755779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 270 - 562
Target Start/End: Original strand, 34389642 - 34389931
Alignment:
Q  270 tgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctt-tggggttgtcaaggtgtttaga 368  Q
    ||||||||| ||||||| |||| ||| ||||||| ||||||||  |||||||||||||||||||| |||| | | || | ||||||| |||||||||||     
T  34389642 tgggggtgattcctttt-ggag-ctgactctgttgctcgggtcattgttcgtcgtcactagctctcgttttttttttgttgggttgttaaggtgtttagg 34389739  T
Q  369 gtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatatt 468  Q
     ||||||||||| | |||| | |||| | | |  |||||||||| | | |   ||||||| ||||||||||||||||||| || ||||||| ||||||||    
T  34389740 ttgtttggagggtgcgtgttc-gttgcgatggg-ccttttccttttcatttgcttgttgtttgcaccaatcgcatatcat-gtctatcgtcgtacatatt 34389836  T
Q  469 gtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatg-tttgacttgatatgttgttctctg 562  Q
    |||||||||| ||   || ||| ||||||||||||||||||||   ||||| |||||||||| ||| ||| |||||||||||||| |||||||||    
T  34389837 gtgtgctggtgtctgatgggccagttatttttgcttcgagatcagaagttggtgtctagttgcaatcatgttttgacttgatatggtgttctctg 34389931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 412
Target Start/End: Complemental strand, 42533753 - 42533514
Alignment:
Q  166 gttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtat 265  Q
    |||||||||  ||||||||||||| ||||||||||||||||| ||| | ||||| | |||||| || | || |||||||   | ||| || ||| ||| |    
T  42533753 gttgtggttgttttggactcggat-tggtgtcggaacggttt-gcggacgggagctatataaggggctagcgggtgttt---acgtgcggtggatggtgt 42533659  T
Q  266 ttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgttt 365  Q
    ||||| | ||||| | ||||| |||||  |  ||||||||||||||||||||||||||||| | |||||||||||||  ||| ||||||| |||||||||    
T  42533658 ttgttagaggtgatttctttt-ggaggtagcatctgttactcgggtccatgttcgtcgtcattggctcttgtttgtgatttttgggttgttaaggtgttt 42533560  T
Q  366 agagtgtttggagggagtgtgtcccgttgtgtttgatccttttcctt 412  Q
    |  ||| ||||||| || |||||||||||| | ||| ||||||||||    
T  42533559 aaggtggttggaggaagcgtgtcccgttgt-tctgagccttttcctt 42533514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 297 - 549
Target Start/End: Complemental strand, 3420032 - 3419782
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccg-ttgt 395  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||  ||| |||| ||  |||||||||  | |||||||||| | ||||| || ||||    
T  3420032 ctctgttacacgggtccatgttcgttgtcactagctcttgtttgtgctttttgggtggtttaggtgtttacggagtttggagggtgcgtgtcacgtttgt 3419933  T
Q  396 gtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggtta 495  Q
    | |||| || ||||||| ||| |  |||||||| |  ||   || |||  || ||| | |||||||||||||||||||||||||| | | |||||||||     
T  3419932 g-ttgagccctttccttttgatttgtttgttgtttaaac--ttcacatgcca-tgtctttcgtcttacatattgtgtgctggttttcggcgagccggttc 3419837  T
Q  496 tttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
     ||| |||||||||||| |||| |  |||||| || ||| | |||||||||||||    
T  3419836 atttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgat 3419782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 265 - 512
Target Start/End: Original strand, 8744828 - 8745071
Alignment:
Q  265 tttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtt 364  Q
    |||||||||||||| ||  ||||||||| |  || |||||||||| ||| ||||||||||||||||| |||||||| || |||  |||||| ||||||||    
T  8744828 tttgttgggggtga-tctcttttggaggtttcctttgttactcggttccttgttcgtcgtcactagcccttgtttgcgttttttcggttgttaaggtgtt 8744926  T
Q  365 tagagtgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttaca 464  Q
    ||   |||||||||| || | |||  |||| | |||| |||| ||||| |||   ||||||||| |||||| | ||||||||| |||   | ||| | |     
T  8744927 tacgatgtttggaggaagcgagtcttgttgag-ttgagccttctccttttgatctatttgttgtttgcacc-accgcatatca-tgtcgtttgtcatgct 8745023  T
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcg 512  Q
    | |||||||||||||| | ||| |||||||| ||||||||||||||||    
T  8745024 ttttgtgtgctggttttcggtgggccggttacttttgcttcgagatcg 8745071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 177 - 527
Target Start/End: Original strand, 16954242 - 16954586
Alignment:
Q  177 tttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggt 276  Q
    ||||||||||||| ||||||||| ||||||| | | ||  ||| ||||| || || |||  |||||| |||| ||||||||||  || ||||||||||||    
T  16954242 tttggactcggatttggtgtcgggacggttt-gtggagttgagctttattaggggttggtgggtgttgtttatgtgaggaggagagtgtttgttgggggt 16954340  T
Q  277 gactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttgg 376  Q
    || | |  | ||||||| | || |||||||||||| | |||| |||||||||| |||| |||||  | |||  | |||| ||||||||||| || |||||    
T  16954341 gatttc-gtctggaggcagtctttgttactcgggtacttgtttgtcgtcactatctctagtttgcat-ttttcgattgttaaggtgtttagggtttttgg 16954438  T
Q  377 agggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctg 476  Q
    ||| || | ||| ||||| | |||| ||||||||||  ||    |||||||| ||||||| | ||||||| ||||   | ||| ||| || |||||||||    
T  16954439 aggtagcgggtctcgttgag-ttgagccttttcctttggatatgtttgttgtttgcaccact-gcatatc-ttgtcgtttgtcatacttactgtgtgctg 16954535  T
Q  477 gtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    ||||||  || |||| ||| ||||||||| ||||||||||||| |||||||    
T  16954536 gtttccgatgggccgattacttttgcttccagatcgagagttggtgtctag 16954586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 297 - 397
Target Start/End: Original strand, 33434814 - 33434916
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgttt-gtg-tctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttg 394  Q
    |||||||||||||||| |||||||||||||||||||| ||||| ||| | ||| |||| ||  |||| ||||| |||||||||||||| | |||||||||    
T  33434814 ctctgttactcgggtctatgttcgtcgtcactagctcctgttttgtgcttttttgggtggtttaggtatttagggtgtttggagggagcgggtcccgttg 33434913  T
Q  395 tgt 397  Q
    |||    
T  33434914 tgt 33434916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 25160525 - 25160605
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggaggg 380  Q
    |||||| ||||||||||||||||||||||||||||||||||||  ||| || | ||  ||||||||| || ||||||||||    
T  25160525 tgttacacgggtccatgttcgtcgtcactagctcttgtttgtgctttttggatggtttaggtgtttacagagtttggaggg 25160605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 300 - 412
Target Start/End: Complemental strand, 47326257 - 47326146
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| |||||||||||||||||| |||||||||||||||||  ||| |||| ||  |||| ||||  | |||||||||| | ||||| ||||||| ||    
T  47326257 tgttacacgggtccatgttcgtcgttactagctcttgtttgtgctttttgggtggtttaggtatttacggagtttggagggtgcgtgtcacgttgtg-tt 47326159  T
Q  400 gatccttttcctt 412  Q
    || ||||||||||    
T  47326158 gagccttttcctt 47326146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 230 - 340
Target Start/End: Original strand, 6584702 - 6584810
Alignment:
Q  230 gggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcacta 329  Q
    |||||| ||||||| |||||||||||||| |||| |||||||||| ||| | ||||| ||||   | |||| |||| |||||||||| |||||||| |||    
T  6584702 gggtggttggtgttatttaggtgaggaggcaggtgtttgttgggg-tgatttctttt-ggagatagcctctattacacgggtccatgatcgtcgtcgcta 6584799  T
Q  330 gctcttgtttg 340  Q
    |||||||||||    
T  6584800 gctcttgtttg 6584810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 6717103 - 6717019
Alignment:
Q  302 ttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttg--gggttgtcaaggtgtttagagtgtttggagggagtg 384  Q
    |||||||||||  ||||||||||||||||||||||||| | | |||   ||||| | ||||||||||| ||||||||||||||||    
T  6717103 ttactcgggtctttgttcgtcgtcactagctcttgttttttttttttttgggtttttaaggtgtttagggtgtttggagggagtg 6717019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 10243893 - 10243938
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  10243893 ctctgttacacgggtacatgttcgtcgtcactagctcttgtttgtg 10243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 37794719 - 37794808
Alignment:
Q  309 ggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtt 398  Q
    ||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||  | ||||| |||| ||||||| | |||||||    
T  37794719 ggtccatgttcgtcgtcactagctcttgtttgtgctttttgggtggtttaggtgtttacggagtttgaagggtgtgtgtcacattgtgtt 37794808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 1320455 - 1320544
Alignment:
Q  251 tgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatg-ttcgtcgtcactagctcttgtttg 340  Q
    ||||||||||||| |||||||||||||| | | |||| ||||| | || | |||| ||||||| || ||||||||||||||||||||||||    
T  1320455 tgaggaggaaggtgtttgttgggggtgatttc-ttttagaggcagcctattttacacgggtccttgtttcgtcgtcactagctcttgtttg 1320544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 37794865 - 37794955
Alignment:
Q  460 ttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    ||||||||||||||||||||| | ||| |||||||  ||| |||||||||||| ||||||  |||||| || ||| | |||||||||||||    
T  37794865 ttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagttggggtctagctgcaatctttgtttgacttgat 37794955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 33434970 - 33435027
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcg 512  Q
    |||| |||||||||||||| |||||||| ||| |||| ||| ||||||||||||||||    
T  33434970 tcgtattacatattgtgtgttggtttccggtgggccgattacttttgcttcgagatcg 33435027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 38305967 - 38306012
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||    
T  38305967 ctctgttacacgggtccatgttcatcgtcactagctcttggttgtg 38306012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 526
Target Start/End: Complemental strand, 5860509 - 5860438
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtcta 526  Q
    |||||||||||||||||||||||||| |  || |||||||  ||| |||||||||||| |||| || |||||    
T  5860509 tcgtcttacatattgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcgaggtcta 5860438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 517
Target Start/End: Original strand, 3866977 - 3867038
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagt 517  Q
    |||||||||||||||||| ||||||| | ||| | || ||| |||||||||||||||||||||    
T  3866977 tcgtcttacatattgtgtcctggttt-cggtgggtcgattacttttgcttcgagatcgagagt 3867038  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 389
Target Start/End: Original strand, 9106861 - 9106964
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagt 383  Q
    |||| ||||| | |||||||| || ||||||| ||||||||| |||||||||||||| || || |||  ||| ||||||||||| ||| || ||||| |     
T  9106861 ttttagaggccgcctctgttattcaggtccattttcgtcgtcgctagctcttgtttgagttttaggg--tgttaaggtgtttagggtgctttgagggtgg 9106958  T
Q  384 gtgtcc 389  Q
    ||||||    
T  9106959 gtgtcc 9106964  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 35746012 - 35745939
Alignment:
Q  489 ccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctg 562  Q
    ||||||| ||||||||||||||||  ||||| || ||||  | |||  |||||||||||||||| |||||||||    
T  35746012 ccggttacttttgcttcgagatcggaagttggtgactagcagcaatcttgtttgacttgatatggtgttctctg 35745939  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 527
Target Start/End: Complemental strand, 11379335 - 11379275
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    ||||||||||| ||| |||| | |||||||||||| ||| |||||| |||||| |||||||    
T  11379335 ttgtgtgctggattctagtgggtcggttatttttgattcaagatcgggagttggtgtctag 11379275  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 549
Target Start/End: Original strand, 38306124 - 38306216
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    ||||||||||||||||||||||| | ||| |||||||  ||| ||||||||| || |||| |  |||||| || ||| | |||||||||||||    
T  38306124 tcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagaacgggagtcggggtctagctgcaatctttgtttgacttgat 38306216  T

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Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 230 - 379
Target Start/End: Complemental strand, 26046405 - 26046257
Alignment:
Q  230 gggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcacta 329  Q
    |||||||||||||| |||||||||| |||  ||| |||||||||| ||| | ||||| |||| ||| ||||||||||||||||| |||||||| ||||||    
T  26046405 gggtggctggtgttgtttaggtgagtaggcgggtgtttgttggggttgatttctttt-ggagactgcctctgttactcgggtccttgttcgtcttcacta 26046307  T
Q  330 gctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagg 379  Q
    |||||||||||||| ||||||||  |  |||||||||| |||||| ||||    
T  26046306 gctcttgtttgtgtttttggggtgttttaggtgtttagggtgtttagagg 26046257  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 383
Target Start/End: Complemental strand, 13954721 - 13954521
Alignment:
Q  181 gactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgact 280  Q
    ||||||||| ||||||||||||||||| | | | ||||| | ||| |  |||||||| ||||| |||||||||||||   ||| |||||||||||||| |    
T  13954721 gactcggatttggtgtcggaacggttt-gtggacgggagctatattacggggtggctagtgttgtttaggtgaggagacgggtgtttgttgggggtgatt 13954623  T
Q  281 cctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggaggg 380  Q
     | | | ||||| ||  | ||||| || ||||  |||||||||||||||||||||||||| || | ||| ||||| ||||||||||| ||||||||||||    
T  13954622 tcctct-ggaggttgcgtttgttattcaggtctttgttcgtcgtcactagctcttgtttgcgtttctggagttgttaaggtgtttagggtgtttggaggg 13954524  T
Q  381 agt 383  Q
    |||    
T  13954523 agt 13954521  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 29087254 - 29087350
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgtt 393  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||  |||||||||  | |||||||||  | ||||||||||    
T  29087254 ctctgttacatgggtccatgttcgtcgtcactagctcttgtttgtgttttttgggtggtttaggtgtttacggagtttggaggatgcgtgtcccgtt 29087350  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 369
Target Start/End: Original strand, 8297091 - 8297255
Alignment:
Q  206 tttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttac 305  Q
    |||||||| ||||| | |||||| |||||||| ||||| ||||||||| ||||    | ||||||||| || | |  |||| ||||| || |||||||||    
T  8297091 tttgcgaaagggagctatataagggggtggctagtgttgtttaggtgaagaggtgaatgtttgttgggagtaatttatttt-ggaggttgcctctgttac 8297189  T
Q  306 tcgggtccatgttcgtcgtcactagctcttgtttg--tgtctttggggttgtcaaggtgtttagag 369  Q
    ||| |||| |||||||| |||||||| ||||||||  | | ||||||||||| |||||||||||||    
T  8297190 tcgagtccttgttcgtcatcactagcacttgtttgcatttttttggggttgttaaggtgtttagag 8297255  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 13954939 - 13954866
Alignment:
Q  18 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggccgtgggcttcagattctgcttgttttggtggcag 91  Q
    |||||||||||| |||||| |||||||||  | |||||| ||||||||||||||| |||||| |||||||||||    
T  13954939 gtaaggatcgtggtggttggggtttgttcacgacggtggtcgtgggcttcagattttgcttgatttggtggcag 13954866  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 541
Target Start/End: Original strand, 8297347 - 8297415
Alignment:
Q  473 gctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgttt 541  Q
    |||||||| ||||| |||| ||| ||||||||||||||||||||||| ||||||| || |||| |||||    
T  8297347 gctggttttcagtgggccgattacttttgcttcgagatcgagagttggtgtctagctgcaattttgttt 8297415  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 549
Target Start/End: Original strand, 698221 - 698316
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    ||||||||||||||||||||||||||  |||| |||||||  ||| |||||||||||| ||||    ||||||||| ||| | |||||||||||||    
T  698221 tcgtcttacatattgtgtgctggtttttagtgggccggttcatttggcttcgagatcgggagtcagggtctagttgcaatctttgtttgacttgat 698316  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 519
Target Start/End: Complemental strand, 24072484 - 24072422
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttg 519  Q
    ||||||||| ||||||||||| ||| |||| |||||||| ||||||||| |||||| ||||||    
T  24072484 gtcttacatgttgtgtgctggattctagtgggccggttacttttgcttcaagatcgggagttg 24072422  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 18592949 - 18592994
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtg 342  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||    
T  18592949 ctctgttacacaggtacatgttcgtcgtcactagctcttgtttgtg 18592994  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 549
Target Start/End: Original strand, 18593103 - 18593198
Alignment:
Q  455 tcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaat-tatgtttgacttgat 549  Q
    |||| ||||||||||||||||| ||| | ||| |||||||  ||| |||||||||||| |||| |  ||||||||| ||| | |||||||||||||    
T  18593103 tcgttttacatattgtgtgctgattttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagttgcaatctttgtttgacttgat 18593198  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 549
Target Start/End: Complemental strand, 13954441 - 13954359
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgat 549  Q
    |||| ||||||||| | ||| |||||||| ||||||||||||||| ||||| | ||||||| || |||  | |||||||||||    
T  13954441 ttgtatgctggttttcggtgggccggttacttttgcttcgagatcaagagtcggtgtctagctgcaatcttatttgacttgat 13954359  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 7392217 - 7392157
Alignment:
Q  489 ccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgat 549  Q
    ||||||| |||||||||||||||| |||||| ||||||| || |||  |||||| ||||||    
T  7392217 ccggttacttttgcttcgagatcgggagttggtgtctagctgcaatcttgtttggcttgat 7392157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 7392385 - 7392321
Alignment:
Q  317 ttcgtcgtcactagctcttgtttgtgtctttg-gggttgtcaaggtgtttagagtgtttggaggg 380  Q
    |||||||||||||||||||||||| || |||| ||||||| || ||||| || ||| ||||||||    
T  7392385 ttcgtcgtcactagctcttgtttgcgtttttgtgggttgttaatgtgttgagggtgcttggaggg 7392321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 7392515 - 7392471
Alignment:
Q  163 gtggttgtggtttgtttggactcggatctggtgtcggaacggttt 207  Q
    ||||| ||||||| ||||||||||||| ||||||| |||||||||    
T  7392515 gtggtcgtggtttatttggactcggatttggtgtcagaacggttt 7392471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 24072649 - 24072568
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttag 367  Q
    |||| ||||| | |||||||| |||||||||| ||||| ||| |||||||||||||  |  ||| ||||||| |||||||||||    
T  24072649 ttttagaggccgcctctgttattcgggtccatattcgttgtcgctagctcttgtttaag--ttttgggttgttaaggtgtttag 24072568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 158 - 379
Target Start/End: Original strand, 57761 - 57981
Alignment:
Q  158 gatgcgtggttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggag 257  Q
    |||| ||||| |||| || |||||||| |||| |||||| |||| ||||| ||| | | ||| | |||||| |||||||| ||||| |||||||||||||    
T  57761 gatgggtggtcgtggcttttttggacttggatttggtgttggaatggttt-gcggacgagagttatataagggggtggcttgtgttatttaggtgaggag 57859  T
Q  258 gaaggtatttgttggggg-tgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtc 356  Q
    |  ||| ||||||||||| ||  | ||||| |||||||  |||||| ||||  |||| ||||||||||||||||||| |||||| || ||| |||||||     
T  57860 gtgggtgtttgttggggggtggtttctttt-ggaggctacctctgtaactcatgtccttgttcgtcgtcactagctcatgtttgcgttttttgggttgtt 57958  T
Q  357 aaggtgtttagagtgtttggagg 379  Q
    ||||||||||| |||||||||||    
T  57959 aaggtgtttagggtgtttggagg 57981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 57519 - 57612
Alignment:
Q  18 gtaaggatcgtgatggttgaggtttgttcgtgtcggtggccgtgg-gcttcagattctgcttgttttggtggcagactccccgaggtcactgtgtg 112  Q
    |||||||||||| |||||| |||| ||||| |  ||||||||||| ||||| |||| ||||||||| ||||||| || || |||||||||||||||    
T  57519 gtaaggatcgtggtggttgtggtt-gttcgcgctggtggccgtggtgcttcggattttgcttgttt-ggtggcacacccctcgaggtcactgtgtg 57612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 527
Target Start/End: Original strand, 58000 - 58060
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    |||||||||| |||||| |  |||||||| |||||||||||||||| |||| | |||||||    
T  58000 ttgtgtgctgatttccattaggccggttacttttgcttcgagatcgggagtcgttgtctag 58060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 215 - 382
Target Start/End: Complemental strand, 42597 - 42429
Alignment:
Q  215 gggagatttataagagggtggctggtgtttt-ttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtcc 313  Q
    ||||| |||||||| |||| |||| |||| | |||||||||||||  ||| |||||||||||||| | ||| | ||||| || |||| ||||||||||||    
T  42597 gggagctttataagggggttgctgatgttatgttaggtgaggaggcgggtgtttgttgggggtgatttcttct-ggaggttgcctctattactcgggtcc 42499  T
Q  314 atgtt-cgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggag 382  Q
     |||| |||||||||||||||||||||| || ||||||||||| || |||||||  ||||||||||||||    
T  42498 ttgtttcgtcgtcactagctcttgtttgcgtttttggggttgttaaagtgtttatggtgtttggagggag 42429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 562
Target Start/End: Original strand, 2825648 - 2825752
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgt 556  Q
    ||||||||||||||||| || | ||| ||| |||| |||| ||||||||||||| |||||||| ||||||| || ||| ||||||||||||||||| |||    
T  2825648 gtcttacatattgtgtgttg-tgtccggtgggccgattatatttgcttcgagattgagagttggtgtctagctgcaatcatgtttgacttgatatggtgt 2825746  T
Q  557 tctctg 562  Q
    ||||||    
T  2825747 tctctg 2825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 158 - 552
Target Start/End: Original strand, 19672672 - 19673059
Alignment:
Q  158 gatgcgtggttgtggtttgtttggactcggatctggtgtcggaacggttttgcgaaggggagatttataagagggtggctggtgttttttaggtgaggag 257  Q
    |||| |||||||||| || || |||||||| | |||||||||| |||||||||| | | ||| | | |||  ||||| |||||||| |||||||||||||    
T  19672672 gatgggtggttgtggctt-ttgggactcggttttggtgtcggatcggttttgcggatgagagttatttaatggggtgactggtgttgtttaggtgaggag 19672770  T
Q  258 gaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtca 357  Q
    |  ||| |||||| ||| ||| | | ||| ||||||   ||| ||||| ||| ||||||||||||| |||||||||||||| |||| ||| ||||||| |    
T  19672771 gcgggtgtttgtttggg-tgatttccttt-ggaggcatcctccgttacacggatccatgttcgtcgccactagctcttgttggtgt-ttttgggttgtta 19672867  T
Q  358 aggtgtttagag-tgtttggagggagtgtgtcccgttgtgtttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatc 456  Q
    |||||||||| |   ||||| ||| | ||||| ||||| |  ||| |||||||||| ||| || ||||| || |||||| | ||||||||| ||||  |     
T  19672868 aggtgtttagggaattttggggggtgcgtgtctcgttgag-atgagccttttccttttgattg-tttgtcgtttgcacc-accgcatatca-tgttgttt 19672963  T
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatg 552  Q
    ||||| | ||||  | | || ||||||||| |||||||| |||||||||||||||| ||||   ||||||| || |||  |||||| |||||||||    
T  19672964 gtcttgcttatttcgcgttgatttccagtgggccggttacttttgcttcgagatcgggagtcagtgtctagctgcaatcttgtttggcttgatatg 19673059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 527
Target Start/End: Original strand, 8254736 - 8254959
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | | |||| ||  |||||||||  | ||||| |||| | ||||| | ||||| ||    
T  8254736 tgttacacgggtccatgttcgtcgtcactagctcttgtttgtgattgttgggtggtttaggtgtttaccgagtttgaagggtgcgtgtcgctttgtg-tt 8254834  T
Q  400 gatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttt 499  Q
    || |||||||||| ||| |  |||||||| |  ||   | ||||  || ||| | ||||||||||||||||||| |||||| | ||| ||||||| ||||    
T  8254835 gagccttttccttttgattcgtttgttgtttaaac--tttgcatgcca-tgtctttcgtcttacatattgtgtgttggttttcggtgggccggttctttt 8254931  T
Q  500 tgcttcgagatcgagagttgatgtctag 527  Q
     |||||||||||| |||| || ||||||    
T  8254932 ggcttcgagatcgggagtcgaggtctag 8254959  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 527
Target Start/End: Original strand, 8268154 - 8268377
Alignment:
Q  300 tgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgttt 399  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | | |||| ||  |||||||||  | ||||| |||| | ||||| | ||||| ||    
T  8268154 tgttacacgggtccatgttcgtcgtcactagctcttgtttgtgattgttgggtggtttaggtgtttaccgagtttgaagggtgcgtgtcgctttgtg-tt 8268252  T
Q  400 gatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttt 499  Q
    || |||||||||| ||| |  |||||||| |  ||   | ||||  || ||| | ||||||||||||||||||| |||||| | ||| ||||||| ||||    
T  8268253 gagccttttccttttgattcgtttgttgtttaaac--tttgcatgcca-tgtctttcgtcttacatattgtgtgttggttttcggtgggccggttctttt 8268349  T
Q  500 tgcttcgagatcgagagttgatgtctag 527  Q
     |||||||||||| |||| || ||||||    
T  8268350 ggcttcgagatcgggagtcgaggtctag 8268377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 512
Target Start/End: Original strand, 30964147 - 30964358
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||  ||| |||| ||  ||||||||   | |||||||||| | ||||| |||||||    
T  30964147 ctctgttacacgggtccatgttcgtcgtcactagctattgtttgtgctttttgggtggtttaggtgtttgcggagtttggagggtgcgtgtcacgttgtg 30964246  T
Q  397 tttgatccttttccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttat 496  Q
     |||| |||||||||| ||| |  |||||||| |  ||   ||||||  || ||| | ||||||||| |||||||||||||||| |  || |||||||      
T  30964247 -ttgaaccttttccttttgatttgtttgttgtttaaac--ttcgcatgcca-tgtctttcgtcttacttattgtgtgctggttttcgatgggccggttca 30964342  T
Q  497 ttttgcttcgagatcg 512  Q
    ||| ||||||||||||    
T  30964343 tttggcttcgagatcg 30964358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 38639860 - 38639744
Alignment:
Q  221 tttataagagggtggctggtgttttttaggtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcg 320  Q
    |||||||| |||||| ||||||| ||||||||||||||  | | |||||||| ||||| | || |   ||||||| ||||||||||||| ||| ||||||    
T  38639860 tttataagggggtggttggtgttgtttaggtgaggaggtggatgtttgttggaggtgatttctgta--gaggctgcctctgttactcggatccttgttcg 38639763  T
Q  321 tcgtcactagctcttgttt 339  Q
    ||||||||| |||||||||    
T  38639762 tcgtcactaactcttgttt 38639744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 4305432 - 4305545
Alignment:
Q  298 tctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgt 397  Q
    ||||||||  || ||||||||||||||||||||||||||||||||  ||| |||||||   |||||||   ||||||||| ||   ||||| |||||||     
T  4305432 tctgttacatggatccatgttcgtcgtcactagctcttgtttgtgctttttgggttgtttgggtgttttcggtgtttggaaggttcgtgtcacgttgtg- 4305530  T
Q  398 ttgatccttttcctt 412  Q
    |||| ||||||||||    
T  4305531 ttgagccttttcctt 4305545  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 519
Target Start/End: Original strand, 12296038 - 12296100
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttg 519  Q
    ||||||||||||||||||||| |||  ||| |||| ||| |||||||||||||||| ||||||    
T  12296038 gtcttacatattgtgtgctggattctggtgggccgattacttttgcttcgagatcgggagttg 12296100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 559
Target Start/End: Complemental strand, 31050871 - 31050777
Alignment:
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttct 559  Q
    |||| |||| |||||||| ||| |||||||| ||||||||||||| || |||| | || |||| || |||  |||||||||||||||| ||||||    
T  31050871 tattatgtgttggtttccggtgggccggttacttttgcttcgagaccgggagtcggtgactagctgcaatcctgtttgacttgatatggtgttct 31050777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 31051048 - 31050966
Alignment:
Q  285 tttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttag 367  Q
    ||||||||| | ||||| ||| |||||||| ||||||||||||||||||||||| || | |||||| |  | |||||||||||    
T  31051048 tttggaggcagcctctggtacacgggtccacgttcgtcgtcactagctcttgttggtctttttgggttgtttaaggtgtttag 31050966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 527
Target Start/End: Complemental strand, 46699002 - 46698933
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    ||||||||||||||||||||| |||  ||| |||| ||| |||||||||||||||| |||||| |||||||    
T  46699002 gtcttacatattgtgtgctggattct-gtgggccgattacttttgcttcgagatcgggagttggtgtctag 46698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 542
Target Start/End: Complemental strand, 22811367 - 22811292
Alignment:
Q  467 ttgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttg 542  Q
    |||||||||||||| | ||| | |||||| ||||||||||||||||  | ||| |||||||||| |||| ||||||    
T  22811367 ttgtgtgctggttttcggtgggtcggttacttttgcttcgagatcggaacttggtgtctagttgcaattttgtttg 22811292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 551
Target Start/End: Complemental strand, 19815421 - 19815348
Alignment:
Q  478 tttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatat 551  Q
    ||||| ||| ||| |||| ||||||||||||||||||||| | ||||||| || |||  |||||| ||||||||    
T  19815421 tttccggtgggccagttacttttgcttcgagatcgagagtcggtgtctagctgcaatcttgtttggcttgatat 19815348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 517
Target Start/End: Original strand, 4305587 - 4305647
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagt 517  Q
    |||||||||||||||| ||||||| | ||| |||||||  ||| |||||||||||| ||||    
T  4305587 gtcttacatattgtgtactggttttcggtgggccggttcatttggcttcgagatcgggagt 4305647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 308 - 546
Target Start/End: Complemental strand, 36136 - 35901
Alignment:
Q  308 gggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtttgatccttt 407  Q
    |||||||||| ||||||| ||||||||||||| || |||| |||| ||  ||||||||| || ||||| |||| | ||||| ||||||||| || |||||    
T  36136 gggtccatgtccgtcgtctctagctcttgtttatgccttttgggtggtttaggtgtttacagagtttgaagggtgagtgtcacgttgtgtt-gagccttt 36038  T
Q  408 tccttgtgactgatttgttgtctgcaccaatcgcatatcattgtttatcgtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcga 507  Q
    ||||| ||| |  |||||||| |  ||   ||||||  ||| || | ||||||||||||||||||||||| || | ||| |||||||  ||| |||||||    
T  36037 tccttttgatttgtttgttgtttaaact--tcgcatgccat-gtctttcgtcttacatattgtgtgctggctttcggtgggccggttcatttggcttcga 35941  T
Q  508 gatcgagagttgatgtctagttggaat-tatgtttgactt 546  Q
    ||||| |||| || ||||||||| ||| | ||||||||||    
T  35940 gatcgggagtcgaggtctagttgcaatctttgtttgactt 35901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 250 - 394
Target Start/End: Complemental strand, 20702225 - 20702081
Alignment:
Q  250 gtgaggaggaaggtatttgttgggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttg-tgtctttg 348  Q
    |||||||||  ||| |||||||||||||| | ||||| |||||  | || |||||||||||||| |||||||||||||||| |||||| ||   | ||||    
T  20702225 gtgaggaggcgggtgtttgttgggggtgatttctttt-ggaggtagcctttgttactcgggtccttgttcgtcgtcactagttcttgtatgcattttttg 20702127  T
Q  349 gggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttg 394  Q
    || |||| ||||||||||| ||||||||||| || | |||||||||    
T  20702126 ggattgttaaggtgtttagggtgtttggaggaagcgggtcccgttg 20702081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 297 - 412
Target Start/End: Complemental strand, 16510668 - 16510554
Alignment:
Q  297 ctctgttactcgggtccatgttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtg 396  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||  ||| |||| ||  |||||||||  | |||||||||| | |||| ||||||||    
T  16510668 ctctcttacacgggtccatgttcgtcgtcactagctcttgtttctgcttttcgggtggtttaggtgtttatggagtttggagggtgcgtgttccgttgtg 16510569  T
Q  397 tttgatccttttcctt 412  Q
     |||| ||||||||||    
T  16510568 -ttgagccttttcctt 16510554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 562
Target Start/End: Complemental strand, 15132732 - 15132635
Alignment:
Q  465 tattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctagttggaattatgtttgacttgatatgttgttctctg 562  Q
    ||||||||| |||||| | ||| |||||||| |||||||||||||||| |||| | || |||| || |||  |||||||||||||||| |||||||||    
T  15132732 tattgtgtgatggttttcggtgggccggttacttttgcttcgagatcgggagtcggtgactagctgcaatcctgtttgacttgatatggtgttctctg 15132635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 3117219 - 3117300
Alignment:
Q  317 ttcgtcgtcactagctcttgtttgtgtctttggggttgtcaaggtgtttagagtgtttggagggagtgtgtcccgttgtgtt 398  Q
    ||||||||||||||||||||||||||  ||| |||| ||  |||||||||  | |||||||||| ||||||| | |||||||    
T  3117219 ttcgtcgtcactagctcttgtttgtgcttttcgggtggtttaggtgtttatggagtttggagggtgtgtgtcacattgtgtt 3117300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 511
Target Start/End: Complemental strand, 32935556 - 32935503
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatc 511  Q
    |||||||||||||||||||| |||| ||| | |||||| |||||||| ||||||    
T  32935556 tcttacatattgtgtgctggattccggtgggtcggttacttttgctttgagatc 32935503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 3117355 - 3117407
Alignment:
Q  458 tcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagat 510  Q
    |||||||||||||||| |||||| ||||| |||||||  ||| ||||||||||    
T  3117355 tcttacatattgtgtgttggttttcagtgggccggttcatttggcttcgagat 3117407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 365
Target Start/End: Original strand, 36335 - 36479
Alignment:
Q  223 tataagagggtggctggtgttttttaggtgaggaggaaggtatttgttggg-ggtgactcctttttggaggctggctctgttactcgggtccatgttcgt 321  Q
    |||||| |||||| |||| || |||||||||||||| |||| |||  |||| ||||| | ||||  ||||| || ||||||||||||||||| |||||||    
T  36335 tataagggggtggttggttttgtttaggtgaggaggcaggtgttttgtgggtggtgatttctttg-ggaggttgcctctgttactcgggtccttgttcgt 36433  T
Q  322 cgtcactagctcttgtt--tgtgtctttggggttgtcaaggtgttt 365  Q
    ||||| |||||||||||   || | ||||||||||| |||||||||    
T  36434 cgtcagtagctcttgttcacgtttttttggggttgttaaggtgttt 36479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 527
Target Start/End: Complemental strand, 1234 - 1164
Alignment:
Q  457 gtcttacatattgtgtgctggtttccagtgagccggttatttttgcttcgagatcgagagttgatgtctag 527  Q
    ||||||||||||||||||||| ||| |||| |||| ||| |||||||||||||| | |||||| |||||||    
T  1234 gtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctag 1164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 46787 - 46843
Alignment:
Q  284 ttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttg 340  Q
    ||||| |||| | |||||||| |||||||||| | ||||||| ||||||||||||||    
T  46787 ttttgaaggccgcctctgttattcgggtccatatccgtcgtcgctagctcttgtttg 46843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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