View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9780_low_5 (Length: 506)
Name: NF9780_low_5
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9780_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 7768273 - 7768765
Alignment:
| Q |
1 |
gtaaaagatcatcatacaagtcaaatgacaatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7768273 |
gtaaaagatcatcatacaagtcaaatgacaatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttgaa |
7768372 |
T |
|
| Q |
101 |
cataattaacaagagacaaaagattgattcatcgcagtctaacaaaggcagcaacagtgctcccaggaaatcaagccacgcttctgttgtcagcttgctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7768373 |
cataattaacaagagacaaaagattgattcatcgcagtctaacaaaggcagcaacagtgcttccaggaaatcaagccacgcttctgttgtcagcttgctc |
7768472 |
T |
|
| Q |
201 |
cctagaaatcaagcgatgcgtctgttggcagctgggaatttcacagcgaatagtctc-----tgactttaggcatttggctatgtacttgatatttttgc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7768473 |
cctagaaatcaagcgatgcgtctgttggcagctgggaatttcacagcgaatagtctctgacttgactttaggcatttggctatgtacttgatatttttgc |
7768572 |
T |
|
| Q |
296 |
tgtaaatacctttatatcacaccatcattcccgttatgtcactctttataaactctgtcgaggcttcatctttaatcaacacgggacttgatttttccaa |
395 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7768573 |
tgtaaatacctttatatcacgccatcgttcccgttatgtcactctttataaactctgtcgaggcttcatctttaatcaacacgggacttgatttttccaa |
7768672 |
T |
|
| Q |
396 |
tatatcaaactgttacatttaactaatatgcatgttctttttaatatgatattagtattactttgtaggtacatcctctgagaccgtcgaggc |
488 |
Q |
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| T |
7768673 |
tatatcaaactgttacatttaactaatatgcatgttctttttaatatgatattagtattactttgtaggtacatcctctgagaccgtcgaggc |
7768765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 7779290 - 7779471
Alignment:
| Q |
9 |
tcatcatacaagtcaaatgacaatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttgaacataatt- |
107 |
Q |
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|||||||| ||||||||| ||||| ||||||||||||||||||| | | | | |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7779290 |
tcatcatatcagtcaaatggcaatcatgaaaataaagctgccattgcgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataattg |
7779389 |
T |
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| Q |
108 |
--------------aacaagagacaaaagattgattcatcgcagtctaacaaaggcagcaacagtgctcccaggaaatcaag |
175 |
Q |
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| T |
7779390 |
gtgattcccagaaaaataagagaaaaaagatcgattcatcgcagtctgacaaaggccgcaacagtgctcccaagaaatcaag |
7779471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 7774491 - 7774560
Alignment:
| Q |
18 |
aagtcaaatgacaatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagag |
87 |
Q |
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|||||||||||||||||| |||||||||||| |||| | ||| | ||||||||| |||||||||| |||| |
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| T |
7774491 |
aagtcaaatgacaatcctcaaaataaagctgacattgcatatcttaagaatatgaatggttcaagaagag |
7774560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 7774604 - 7774660
Alignment:
| Q |
119 |
aaagattgattcatcgcagtctaacaaaggcagcaacagtgctcccaggaaatcaag |
175 |
Q |
| |
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| T |
7774604 |
aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatcaag |
7774660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 12815058 - 12815012
Alignment:
| Q |
239 |
tttcacagcgaatagtctctgactttaggcatttggctatgtacttg |
285 |
Q |
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| T |
12815058 |
tttcacagtgaatagtctttgactttaggcatttggctgtgtacttg |
12815012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 12752297 - 12752229
Alignment:
| Q |
30 |
aatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttg |
98 |
Q |
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|||||| ||||||||||||||| | ||||| | |||||||| |||||||||||||| |||||||||| |
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| T |
12752297 |
aatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttg |
12752229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 12815257 - 12815189
Alignment:
| Q |
30 |
aatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttg |
98 |
Q |
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|||||| ||||||||||||||| | ||||| | |||||||| |||||||||||||| |||||||||| |
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| T |
12815257 |
aatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttg |
12815189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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