View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9780_low_6 (Length: 492)
Name: NF9780_low_6
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9780_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 29980203 - 29980673
Alignment:
| Q |
14 |
gtttgtgtttgggtttggtttgactcagtagcaacagatgaagaagaaagaaagtgagacttgggtgagtggtgtggtcttggccccgtcggcggtctgg |
113 |
Q |
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| T |
29980203 |
gtttgtgtttgggtttggtttgactcagtagcaacagatgaagaagaaagaaagtgagacttgggtgagtggtgtggtcttggccccgtcggcggtctgg |
29980302 |
T |
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| Q |
114 |
tctatgccaaggctcaaggctggcaaccttccataattttctcaccaacacgtgggcaaccgcagacacacgtttgattaaattttgtgagtgaaaatct |
213 |
Q |
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| T |
29980303 |
tctatgccaaggctcaaggctggcaaccttccataattttctcaccaacacgtgggcaaccgcagacacacgtttgattaaattttgtgagtgaaaatct |
29980402 |
T |
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| Q |
214 |
acttgtgctattgtaattgtaattatataggtattgttccagaatgaatgcatgcatgcatgtatataagatagtggtaatcatatctg-------nnnn |
306 |
Q |
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| T |
29980403 |
acttgtgctattgtaattgtaattatataagtattgttccagaatgaatgcatgcatgcatgtatataagatagtggcaatcatatctgttttttttttt |
29980502 |
T |
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| Q |
307 |
nnnnaatcattgtagtcttcttaaactagttgaatatcaccttttttctcgaaaacctagtatcgtatagctagc---------cattaaagttggtaaa |
397 |
Q |
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| T |
29980503 |
ttttaatcattgtagtcttcttaaactagttgaatatcaccttttttctcgaaaacctagtatcgtatagctagccacaaaaggcattaaagttggtaaa |
29980602 |
T |
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| Q |
398 |
agaattatcatagatgaataaaaaacatttgattggtaaattaaagttatcgatggcttaattgtgtcgtg |
468 |
Q |
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| T |
29980603 |
agaattatcatagatgaataaaaaacatttgattggtaaattaaagttatcgatggcttaattatgtcgtg |
29980673 |
T |
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