View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9780_low_9 (Length: 389)
Name: NF9780_low_9
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9780_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 24722504 - 24722858
Alignment:
| Q |
17 |
agataatgatttcaggtttcgcgacacctgttcagatggaccaaagtagtcacttacgcagattattatgagcgtgccttaacgaatggtgtactcagca |
116 |
Q |
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| T |
24722504 |
agataatgatttcaggtttcgcggcacctgttcagatggaccaaagaagtcacttacgcagattattatgagcgtgccttaacgaatggtgtactcagca |
24722603 |
T |
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| Q |
117 |
ttcaaagaggaacagatcctggagtgatgatttatatgcttcctcttggccttggtgtttccaaagcacaaacgtattggaaatggggaacgccatttga |
216 |
Q |
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| T |
24722604 |
ttcaaagaggaacagatcctggagtgatgatttatatgcttcctctcggccttggtgtttccaaagcacaaacgtattggaaatggggaacgccatttga |
24722703 |
T |
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| Q |
217 |
ttctttctggtgctgctatggaacaggtttgtatttgttttagtttttctaaaattgacaaataatattaaacaaacaagtatttgaaatatgacgctta |
316 |
Q |
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| T |
24722704 |
ttctttctggtgctgctatggaacaggtttgtatttgttttagtttttctaaaattgacaaataatattaaacaaacaagtatttgaaatatgagactta |
24722803 |
T |
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| Q |
317 |
acatgagacggagggagtaatagtcttcgcaaactcctctattcttttatctgtg |
371 |
Q |
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| T |
24722804 |
acatgagacggagggagtaatagtcttcgcaaactcctctattcttttatctgtg |
24722858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 24691740 - 24691988
Alignment:
| Q |
16 |
cagataatgatttcaggtttcgcgacacctgttcagatggaccaaagtagtcacttacgcagattattatgagcgtgccttaacgaatggtgtactcagc |
115 |
Q |
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| T |
24691740 |
cagataatgatttcaggtttcacggcacctgttcagatggaccaaagaagtcacttatgcagattattatgagcgtgccttaacgaatggtgtactcgga |
24691839 |
T |
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| Q |
116 |
attcaaagaggaacagatcctggagtgatgatttatatgcttcctcttggccttggtgtttccaaagcacaaacgtattggaaa----tggggaacgcca |
211 |
Q |
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| T |
24691840 |
attcaaagaggaacagatcctggtgtgatgatttatatgcttcctttaggtattggggtttcgaaagctaaaac----tggacatagttggggaaatcca |
24691935 |
T |
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| Q |
212 |
tttgattctttctggtgctgctatggaacaggtttgtatttgttttagttttt |
264 |
Q |
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| T |
24691936 |
tttgacactttctggtgctgctacggaacaggtaggtatttgttttaggtttt |
24691988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 24730991 - 24731148
Alignment:
| Q |
26 |
tttcaggtttcgcgacacctgttcagatggaccaaagtagtcacttacgcagattattatgagcgtgccttaacgaatggtgtactcagcattcaaagag |
125 |
Q |
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| T |
24730991 |
tttcaggtttcgcggcacctgtttagatggacgaaagaagtctcgtacgcagattattatgaacgtgccttaacgaatggtgtactcagtattcaaagag |
24731090 |
T |
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| Q |
126 |
gaacagatcctggagtgatgatttatatgcttcctcttggccttggtgtttccaaagc |
183 |
Q |
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| T |
24731091 |
gaacagatcctggagtgatgatttatatgcttcctctaggtcttggtgtttccaaagc |
24731148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 24763711 - 24763740
Alignment:
| Q |
263 |
ttctaaaattgacaaataatattaaacaaa |
292 |
Q |
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| T |
24763711 |
ttctaaaattgacaaataatattaaacaaa |
24763740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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