View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9781_high_1 (Length: 524)
Name: NF9781_high_1
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9781_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 54964259 - 54964764
Alignment:
| Q |
1 |
ccatcatggctctgttagatggaggaacattgagaaggcacaagagttggtttaaggtggaaatctttcattatcttcttcaaaggattttattttatgg |
100 |
Q |
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| T |
54964259 |
ccatcatggctctgttagatggaggaacattgagaaggcacaagagttggtttaaggtggaaatctttcattatcttcttcaaaggattttattttatgg |
54964358 |
T |
|
| Q |
101 |
tatttttaatcaaatagatgtggtggtgactaacaaatagtttccgctgcaatgcaattgtaaaatcttctaatttaatttgttggggattatttgacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54964359 |
tatttttaatcaaatagatgtggtggtgactaacaaatagtttccgctgcaatgcaattgtaaaatcttctaatttaatttgttggggattattttacag |
54964458 |
T |
|
| Q |
201 |
tctaatggacttggtgtttgattatatgtatatctgtcagtttgatnnnnnnnn-ttgaatcttattcaacatatttgccactgatgcagttcattcgta |
299 |
Q |
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|||||||||||||||||||| | | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
54964459 |
tctaatggacttggtgtttgctaaaatgtatatctgtcagtttgataaaaaaaaattgactcttattcaacatatttgccactgatgcaattcattcgta |
54964558 |
T |
|
| Q |
300 |
ctcagtcagtcagttagttttatcctttccattttttgcagccacgtctcactgatattaattgatgcacaatgctacagtttctcgaatgtcaatcaag |
399 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54964559 |
ctcagtcagttagttagttttatcctttccattttttgcagccacgtctcactgatattaattgatgcacaatgctacagtttctcgaatgtcaatcaag |
54964658 |
T |
|
| Q |
400 |
tttaggatactgtactttctgtttattctgtaatagcaaattattaacctgttgtgtttgtttcgatacaattatttactggagtagttgttatttaact |
499 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54964659 |
tttaggatactgtactttctgtttattctgtaatagtaaattattaacctgttgtgtttgtttcgatacaattatttaccggagtagttgttatttaact |
54964758 |
T |
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| Q |
500 |
ttgtac |
505 |
Q |
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|||||| |
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| T |
54964759 |
ttgtac |
54964764 |
T |
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