View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9781_high_11 (Length: 240)

Name: NF9781_high_11
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9781_high_11
NF9781_high_11
[»] chr6 (28 HSPs)
chr6 (1-224)||(5180727-5180950)
chr6 (1-224)||(5448728-5448951)
chr6 (47-224)||(5100817-5100994)
chr6 (1-224)||(5283177-5283397)
chr6 (47-224)||(5135918-5136095)
chr6 (42-217)||(5098337-5098512)
chr6 (48-222)||(5398167-5398341)
chr6 (47-224)||(5372216-5372393)
chr6 (3-222)||(5439132-5439351)
chr6 (47-221)||(5177861-5178035)
chr6 (47-221)||(5279686-5279860)
chr6 (47-221)||(5688902-5689076)
chr6 (47-224)||(5156012-5156189)
chr6 (47-224)||(5242511-5242688)
chr6 (47-224)||(5351519-5351696)
chr6 (1-152)||(5256067-5256218)
chr6 (47-224)||(5427019-5427196)
chr6 (47-224)||(5346148-5346325)
chr6 (48-224)||(5352863-5353039)
chr6 (47-224)||(5065448-5065625)
chr6 (47-224)||(5126628-5126805)
chr6 (47-224)||(23127309-23127486)
chr6 (47-224)||(2939030-2939211)
chr6 (71-166)||(5334362-5334457)
chr6 (47-224)||(5124442-5124619)
chr6 (58-224)||(5072692-5072858)
chr6 (49-175)||(5253701-5253827)
chr6 (184-222)||(5334299-5334337)
[»] chr7 (1 HSPs)
chr7 (58-224)||(36212931-36213097)
[»] chr3 (4 HSPs)
chr3 (48-204)||(47985393-47985549)
chr3 (48-204)||(48003967-48004123)
chr3 (48-204)||(47994680-47994836)
chr3 (48-204)||(48013252-48013408)
[»] chr4 (4 HSPs)
chr4 (47-222)||(4132617-4132789)
chr4 (93-224)||(25568959-25569090)
chr4 (47-222)||(4319301-4319476)
chr4 (47-222)||(4122643-4122818)
[»] scaffold0294 (1 HSPs)
scaffold0294 (49-224)||(7878-8053)
[»] scaffold1476 (1 HSPs)
scaffold1476 (35-142)||(43-150)
[»] chr2 (1 HSPs)
chr2 (35-142)||(22583289-22583396)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5180727 - 5180950
Alignment:
1 cattcagtttcatcacctctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5180727 cattcagtttcatcacctctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaa 5180826  T
101 caaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5180827 caaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctg 5180926  T
201 aatggtagcctttgtgtaattttt 224  Q
    ||||||||||||||||||||||||    
5180927 aatggtagcctttgtgtaattttt 5180950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5448951 - 5448728
Alignment:
1 cattcagtttcatcacctctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaa 100  Q
    |||||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||| | | ||||||||| |||| |||||   ||||| ||||    
5448951 cattcattttcatcacctctacaagcaatgacgttaaaatcttgtgcatcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaa 5448852  T
101 caaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctg 200  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||| |||||| ||||| | ||||||||| || ||||| || |||||||||||||  ||    
5448851 caaaaacgatctccactttgtttccgggttctatacttgatactaacctctgcccctccttatcttcaaaggaaactaatgtctcactcttatagatttg 5448752  T
201 aatggtagcctttgtgtaattttt 224  Q
    ||||||||||||||||||||||||    
5448751 aatggtagcctttgtgtaattttt 5448728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 5100817 - 5100994
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
5100817 catcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactac 5100916  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    |||| || |||| ||||||||||| |||||||| |  || |||||||||||||||||||| |||||||||||||||||    
5100917 cctcagagcctcctcatcttcaaaggagactaatgcctcgctcttatagagctgaatggtggcctttgtgtaattttt 5100994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5283177 - 5283397
Alignment:
1 cattcagtttcatcacctctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaa 100  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
5283177 cattcactttcatcacttctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaa 5283276  T
101 caaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctg 200  Q
    |||| | |||||||||||||||||| ||||| || ||||||| ||||||||| | |   |||| ||||||  ||   || | |||||| |||||||| ||    
5283277 caaatatgacctccactttgttacctggttcgatacttgatattaccctctgccac---tcattttcaaagtaggaaaatgcatcactattatagagttg 5283373  T
201 aatggtagcctttgtgtaattttt 224  Q
     ||||| |||||||||||||||||    
5283374 gatggtggcctttgtgtaattttt 5283397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 5135918 - 5136095
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
5135918 catcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactac 5136017  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    |||| || |||| ||||||||||| ||| |||| |  || ||||| |||||||||||||| |||||||||||||||||    
5136018 cctcagagcctcctcatcttcaaaggaggctaatgcttcgctcttgtagagctgaatggtggcctttgtgtaattttt 5136095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 5098512 - 5098337
Alignment:
42 ttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgat 141  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||||| || |||||||||||||||||| |||||||| ||||||    
5098512 ttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggttctatacttgat 5098413  T
142 actaccctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgt 217  Q
    | ||||||||| | ||| ||||||||||| ||||| || |  ||||||||||||||||||||||| ||||||||||    
5098412 attaccctctggctctcctcatcttcaaaggagaccaatgcctcactcttatagagctgaatggtggcctttgtgt 5098337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 5398341 - 5398167
Alignment:
48 atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc 147  Q
    ||||||||| ||||||| || |||||||||||||||||||   ||||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||||    
5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactacc 5398242  T
148 ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattt 222  Q
    || || |||||||||| |||||| |||| |||||  ||||||||||||||||||||||| |||||||||||||||    
5398241 ctttgcccctcttcatgttcaaaggagaataacgcctcactcttatagagctgaatggtggcctttgtgtaattt 5398167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 5372393 - 5372216
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||| ||||| |||||||||| |||||||||||||||||||   ||||| | |||||||  || ||||||||||||||| |||||||  |||||||||||    
5372393 catcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactac 5372294  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    |||||| ||||||||||||||||| |||||||| |  ||||||||||| ||||||||||| |||||||||||||||||    
5372293 cctctgcccctcttcatcttcaaaggagactaatgcttcactcttataaagctgaatggtggcctttgtgtaattttt 5372216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 5439351 - 5439132
Alignment:
3 ttcagtttcatcacctctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaaca 102  Q
    |||| ||||||||| ||||| ||||| |  |||||||| ||||||||||||||| ||||||  ||||||||| ||  ||||||||   ||||  ||||||    
5439351 ttcattttcatcacatctactagcaacggcattcaaattttgtgcatcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaaca 5439252  T
103 aaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaa 202  Q
    ||||| ||||||||||||||||| |||||||| ||||||  || |||||| ||||| |||||||||||||||||||  |  |||||||||||||||||||    
5439251 aaaacaacctccactttgttaccaggttctatacttgattttaacctctgcccctcctcatcttcaaaagagactacagcctcactcttatagagctgaa 5439152  T
203 tggtagcctttgtgtaattt 222  Q
    |||| |||||||||| ||||    
5439151 tggtggcctttgtgtgattt 5439132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 5178035 - 5177861
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||| ||||||| || ||| ||||||||||||||||  ||||||||||||| ||| ||||||||||||||||  |||||||| |||||||||||    
5178035 catcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactac 5177936  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaatt 221  Q
     ||||||||||||||||||||||| ||| |||| |  || |||||||| ||||||||||| || |||||||||||    
5177935 tctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaatt 5177861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 5279860 - 5279686
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||| ||||||| || ||| ||||||||||||||||  ||||||||||||| ||| ||||||||||||||||  |||||||| |||||||||||    
5279860 catcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactac 5279761  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaatt 221  Q
     ||||||||||||||||||||||| ||| |||| |  || |||||||| ||||||||||| || |||||||||||    
5279760 tctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaatt 5279686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 5688902 - 5689076
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||| ||||||| || ||| ||||||||||||||||  |||||||||||| |||| ||||||||||||||||  |||||||| |||||||||||    
5688902 catcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 5689001  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaatt 221  Q
     ||||| ||||||||||||||||| |||||||| |  || |||||||| ||||||||||| || |||||||||||    
5689002 tctctgtccctcttcatcttcaaaggagactaatgcctcgctcttataaagctgaatggtggcttttgtgtaatt 5689076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 5156012 - 5156189
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||| ||||| ||||||| || ||||||||||||||||||| |  |||| |||||||||  |||||||||||||||||| |||||||  |||||||||||    
5156012 catcgtatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactac 5156111  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    |||||| ||||||||||||||||| ||| | || |  ||||||||||| ||||||||||| |||||||||||||||||    
5156112 cctctgcccctcttcatcttcaaaggaggccaatgcctcactcttataaagctgaatggtggcctttgtgtaattttt 5156189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 5242511 - 5242688
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||| ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||    
5242511 catcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactac 5242610  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
     ||| | ||||  ||||||||||| | | |||  |  || ||||| |||||||||||||| |||||||||||||||||    
5242611 tctcagccccttctcatcttcaaaggcggctactgcctctctcttgtagagctgaatggtggcctttgtgtaattttt 5242688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 5351696 - 5351519
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||| ||||||| | ||||||| ||||||||| ||   ||||| |||||||||| ||||||||||||||||| ||||||||| ||||||||||     
5351696 catcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatactaa 5351597  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    |||||| ||||| ||||||||||| || ||||| |  ||||||||||||||| ||||||| |||||||||||||||||    
5351596 cctctgcccctcctcatcttcaaaggaaactaatgcctcactcttatagagccgaatggtggcctttgtgtaattttt 5351519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 5256067 - 5256218
Alignment:
1 cattcagtttcatcacctctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaa 100  Q
    |||||| |||||||||  |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||   ||||  ||||    
5256067 cattcactttcatcacggctacaagcaatgtgattcaaattttgtgcatcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaa 5256166  T
101 caaaaacgacctccactttgttaccgggttctatgcttgatactaccctctg 152  Q
    |||| |||||||||||||||||||| ||||| || ||||||| |||||||||    
5256167 caaatacgacctccactttgttacctggttcaatacttgatattaccctctg 5256218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 5427196 - 5427019
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||| ||||||| | |||||||| |||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||    
5427196 catcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactac 5427097  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
     || |  ||||| ||||||||||| || |||||    ||||||||||| ||||||||| | |||||||||||||||||    
5427096 tctttccccctcctcatcttcaaatgacactaatacctcactcttataaagctgaatgatggcctttgtgtaattttt 5427019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 5346325 - 5346148
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||  |||||||||||||||||||||||||||||||  ||||||| |||||  || ||||||||||||||||| |||||||| |||||||| ||    
5346325 catcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaac 5346226  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
     ||||| ||||| ||||||||||| | | |||  |  || ||||| || |||||||||||||||||||||||||||||    
5346225 tctctggccctcctcatcttcaaaggcggctactgcctctctcttgtatagctgaatggtagcctttgtgtaattttt 5346148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 5352863 - 5353039
Alignment:
48 atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc 147  Q
    |||||||||||||||||||| |||||||||||| |||||||  ||||| ||||||| ||| ||||| ||||||| ||| || || || |||||||||||     
5352863 atcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactact 5352962  T
148 ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    ||||| ||||| ||||||||||| || | ||| |  || |||||||| |||||||||||||||||||||||||||||    
5352963 ctctgcccctcctcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttt 5353039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 5065448 - 5065625
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||  ||||||| || |||| ||||||||| |||||  ||||||||||||| ||| |  |||||||| || || ||||| || |||||||||||    
5065448 catcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactac 5065547  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
     ||||| ||||| ||||||||||| |||| |||||  || |||||||||||||||||||| |  ||||||||||||||    
5065548 tctctgcccctcctcatcttcaaaggagattaacgcctctctcttatagagctgaatggtggattttgtgtaattttt 5065625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 5126628 - 5126805
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||  |||||||  ||||||||||||||||||||||  |||| |||||||| ||| | ||| ||||||||||| | |||||| |||||||||||    
5126628 catcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactac 5126727  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
     ||||  ||||| ||||||||||| ||||||   |  || ||||||||||| |||||||| ||||| |||||||||||    
5126728 tctctccccctcctcatcttcaaaggagactgctgcctctctcttatagagttgaatggtggccttcgtgtaattttt 5126805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 23127309 - 23127486
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||| ||||||| || ||| |||||||||| |||||  ||||||||||| | ||| ||||||| ||||||||| ||||||   ||||||||||     
23127309 catcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatactaa 23127408  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
     ||||  || || |||||||| || |||||||| || || |||||||||| |||||||||| ||||||||||||||||    
23127409 gctcttcccttcctcatcttcgaacgagactaatgtctctctcttatagatctgaatggtaccctttgtgtaattttt 23127486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 2939211 - 2939030
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||| |||||||||| || ||||||||||||| ||   ||||| | |||||||  |||||||||||||||||| |||| ||  |||||||||||    
2939211 catcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactac 2939112  T
147 cctctgaccctctt----catcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    |||||| || ||||    ||||||| || |||||||| |  ||||||||||||||||||||||| |||||| | ||||||||    
2939111 cctctgcccttcttcatccatcttcgaaggagactaatgcctcactcttatagagctgaatggtggcctttatataattttt 2939030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 5334457 - 5334362
Alignment:
71 tcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccctcttcatctt 166  Q
    ||||||||| |||||||   ||||| ||||||||||||||||||||||||||||| |||||||  | ||||||||||||||  |||||||||||||    
5334457 tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctt 5334362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 5124442 - 5124619
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||  | ||| |||| ||||| |||||||||||| |  |||| |||||||||||| |  |||||||| ||||| |||||||| || |||||||     
5124442 catcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatactaa 5124541  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
     || || ||||| || |||| ||| | |||||| | ||| ||||||||||| ||||||||  |||| |||||||||||    
5124542 tctatgcccctcctcctcttgaaatgcgactaatgcatctctcttatagagttgaatggtccccttcgtgtaattttt 5124619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 5072692 - 5072858
Alignment:
58 agataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccct 157  Q
    |||||||||  |||||| ||||||||||||   ||||||| |||||  || |||||||||| |||||| || ||||| ||||||||||  ||||  ||||    
5072692 agataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatactaatctctcgccct 5072791  T
158 cttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    | |||||||  || |||||||| |  || |||||||| || |||||||| || || |||||||||||    
5072792 catcatctttgaaggagactaatgcctctctcttatatagttgaatggtggctttagtgtaattttt 5072858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 5253827 - 5253701
Alignment:
49 tcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactaccc 148  Q
    |||||||  ||||||| ||  ||| |||||||||||||||| ||||||||||||| ||| | ||||||||| || || ||||| || ||| ||| ||| |    
5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc 5253728  T
149 tctgaccctcttcatcttcaaaagaga 175  Q
    | || ||||| || |||||||| ||||    
5253727 tttgcccctcctcgtcttcaaaggaga 5253701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 5334337 - 5334299
Alignment:
184 tcactcttatagagctgaatggtagcctttgtgtaattt 222  Q
    |||||||||||||| |||||||| |||||||||||||||    
5334337 tcactcttatagagttgaatggtggcctttgtgtaattt 5334299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 36212931 - 36213097
Alignment:
58 agataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccct 157  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||| ||| ||||||| ||| | ||| |||||||| ||||||||||  ||||| ||||    
36212931 agataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatctctgcccct 36213030  T
158 cttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    | ||||||||||| |||||||| |  || |||||||||| |||||||||||||||||||| ||||||    
36213031 cctcatcttcaaatgagactaatgcctctctcttatagatctgaatggtagcctttgtgtgattttt 36213097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 47985393 - 47985549
Alignment:
48 atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc 147  Q
    ||||||||| ||||||| |||| || |||||||||||||||  ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||     
47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
148 ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatg 204  Q
    ||||  ||||| |||||| |||| |||| ||| || |||||||||||||| ||||||    
47985493 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatg 47985549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 48003967 - 48004123
Alignment:
48 atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc 147  Q
    ||||||||| ||||||| |||| || |||||||||||||||  ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||     
48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
148 ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatg 204  Q
    ||||  ||||| |||||| |||| |||| ||| || |||||||||||||| ||||||    
48004067 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatg 48004123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 47994680 - 47994836
Alignment:
48 atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc 147  Q
    ||||||||| ||||||| |||| || |||||||||||||||  ||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||     
47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
148 ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatg 204  Q
    ||||  ||||| |||||| |||| |||| ||| || |||||||||||||| ||||||    
47994780 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatg 47994836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 48013252 - 48013408
Alignment:
48 atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc 147  Q
    ||||||||| ||||||| |||| || |||||||||||||||  ||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||     
48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
148 ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatg 204  Q
    ||||  ||||| |||||| |||| |||| ||| || |||||||||||||| ||||||    
48013352 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatg 48013408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 4132617 - 4132789
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||  ||||||| |||||||||| ||||||||||||| ||| |||||||   ||| | ||| ||||||| ||| ||||| ||  ||||||||||    
4132617 catcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaac---aacaatctcgactttgtcaccaggttccatatttgatactac 4132713  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattt 222  Q
     ||||| | ||| |||| |||||| ||| | || |  || |||||||||||||||||||||| ||| |||| ||||    
4132714 tctctgccactcctcattttcaaaggaggcgaatgcctctctcttatagagctgaatggtagtcttcgtgtgattt 4132789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 25569090 - 25568959
Alignment:
93 ctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccctcttcatcttcaaaagagactaacgtatcactctta 192  Q
    ||||||||||||||| |||||||||||||| || |||||||| |||||||||||  | || ||||| || | |||||| || ||||| |  || |||||     
25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactactatatgcccctcctcgttttcaaaggaaactaatgcctctctcttg 25568991  T
193 tagagctgaatggtagcctttgtgtaattttt 224  Q
    |||| ||||||||| | ||| |||||||||||    
25568990 tagacctgaatggtggacttggtgtaattttt 25568959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 4319301 - 4319476
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||  ||||||| |||||||||| ||||||||||||| ||| ||||||| | ||| | |||||| |||| ||| ||||| ||  ||| ||| ||    
4319301 catcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgttacaac 4319400  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattt 222  Q
     ||||| | ||| |||| |||||| |||  ||| |  || ||||||||||| |||||||| | |||||||| ||||    
4319401 tctctgccactcctcattttcaaaggaggataatgcttctctcttatagagttgaatggtggtctttgtgtgattt 4319476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 4122643 - 4122818
Alignment:
47 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 146  Q
    |||||||||  ||||||| || ||||||| ||||||||||||| ||  ||||||||| ||| | ||||||||||| ||| ||||| ||  ||||||| ||    
4122643 catcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccatatttgataccac 4122742  T
147 cctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattt 222  Q
     ||||  |  || |||| ||| || |||  |||||  || ||||||||||| |||||||| | |||||||| ||||    
4122743 tctcttccattcctcattttctaaggaggataacgcctctctcttatagagttgaatggtggtctttgtgtgattt 4122818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 7878 - 8053
Alignment:
49 tcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactaccc 148  Q
    |||||||  |||||||||| ||| |  ||| |||||||||  | | ||||||||| ||| |||||||||||||| ||||||||||  ||||||||||       
7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatactaaat 7977  T
149 tctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaattttt 224  Q
    ||||    || ||||| | ||| ||  |||| || ||||||||||||| ||||||||| |||||||||||||||||    
7978 tctgcttttcctcatccttaaaggaagctaatgtttcactcttatagatctgaatggtggcctttgtgtaattttt 8053  T

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Target: scaffold1476 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 150 - 43
Alignment:
35 tcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctat 134  Q
    |||||||| || |||||||||| |||||||    ||||| ||  ||||||||| | |||||| |||||| | | ||||||||||| ||||| ||||||||    
150 tcaaatctggttcatcatatacgagataaaggaatgtctgctctacaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctat 51  T
135 gcttgata 142  Q
     |||||||    
50 acttgata 43  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 22583289 - 22583396
Alignment:
35 tcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctat 134  Q
    |||||||| || |||||||||| |||||||    ||||| ||  ||||||||| | |||||| |||||| | | ||||||||||| ||||| ||||||||    
22583289 tcaaatctggttcatcatatacgagataaaggaatgtctgctctacaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctat 22583388  T
135 gcttgata 142  Q
     |||||||    
22583389 acttgata 22583396  T

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