View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9781_high_12 (Length: 237)
Name: NF9781_high_12
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9781_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 2930630 - 2930827
Alignment:
| Q |
18 |
gtctctatcttcttcatcccactggaaactcatattcccgggtgagtcccagttctccatcgccggaaactcattctccgaagaactatccgaatcagac |
117 |
Q |
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| T |
2930630 |
gtctctatcttcttcatcccaccggaaactcatattcccgggtgagtcccagttctccatcgccggaaactcattctccgaagaactatccgaatcagac |
2930729 |
T |
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| Q |
118 |
tcaggataataacgtgacagtgaagagtgtctcaaaattccagcaacacaattctcattagaaataatatcctctgtttcttcatcttcatatataac |
215 |
Q |
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| T |
2930730 |
tcaggataataacgtgacagtgaagagtgtctcaaaattccagcaacacaattctcattagaaataatatcctctgtttcttcatcttcatatataac |
2930827 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 36117473 - 36117417
Alignment:
| Q |
80 |
ccggaaactcattctccgaagaactatccgaatcagactcaggataataacgtgaca |
136 |
Q |
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| T |
36117473 |
ccggaaactcatcctccgaggagctatccgaatcagattccggatagtaacgtgaca |
36117417 |
T |
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