View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9781_high_13 (Length: 217)
Name: NF9781_high_13
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9781_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 6413220 - 6413407
Alignment:
| Q |
13 |
agcataggggatagtaagtgtacatttcaaaatttacaatttacaatatttcatttagcatttggtttctaactcaaatttttgagttagattggatcat |
112 |
Q |
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| T |
6413220 |
agcatagcggatagtaagtgtacatttcaaaatttacaatttacaatatttcatttagcatttggtttctaactcaaatttttgagttagattggatcat |
6413319 |
T |
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| Q |
113 |
agttggcaattgcaaaacgcataaaataatggtttgttcaaattccgttacactatagtgccactaaaactgttattttacaatatttt |
201 |
Q |
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| T |
6413320 |
agttggcaattgcaaaacgcataaaa-aatggtttgttcaaattccgttacactatagtgccactaaaactgttattttacaatatttt |
6413407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 6600646 - 6600537
Alignment:
| Q |
49 |
caatttacaatatttcatttagcatttggtttctaactcaaatttttgagttagattggatcatagttggcaattgcaaaacgcataaaataatggtttg |
148 |
Q |
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| T |
6600646 |
caatttacaatacttcatttagcagttgatttctaccttaaacttttgagttagactgaatcattg-tggcaattgcggattgcggaaaataatggttag |
6600548 |
T |
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| Q |
149 |
ttcaaattccg |
159 |
Q |
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| T |
6600547 |
ttcaaattccg |
6600537 |
T |
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