View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9781_high_2 (Length: 419)
Name: NF9781_high_2
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9781_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 4936502 - 4936101
Alignment:
| Q |
16 |
gttctctcattcacccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtactaaacnnnnnnnnn-----gggcatttagatgttatg |
110 |
Q |
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| T |
4936502 |
gttctctcattttcccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtactaaacaaaagaaaaaaaaagggcatttagatgttatg |
4936403 |
T |
|
| Q |
111 |
cagtttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacggaaggcaatcatgttcgaggaact |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
4936402 |
cagtttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacagaaggtaatcatgttcgaggaact |
4936303 |
T |
|
| Q |
211 |
gtcgagcaccaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccacttcggctagtcctaaccttggttcaaacttgac |
310 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
4936302 |
gtcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccatttcggctagacctaaccttggttcaaacttgac |
4936203 |
T |
|
| Q |
311 |
agttgacacctgttcttatcacatttatcctaccatatagcagttcttaggaacattgatctgacaaaatcagttttgacaaacatatgtttggtttgat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||||| |||||||||| |||||||||||||||| |
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| T |
4936202 |
agttgacacctgttcttatcacatttatcctaccatatagcagttcttaggagcattgatataagaaaatcaattttgacaaaaatatgtttggtttgat |
4936103 |
T |
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| Q |
411 |
gt |
412 |
Q |
| |
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|| |
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| T |
4936102 |
gt |
4936101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 4952207 - 4951801
Alignment:
| Q |
16 |
gttctctcattcacccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtactaaacnnnnnnnnn----------gggcatttagatg |
105 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
4952207 |
gttctctcatttgcccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtaccaaacaaaagaaagaaaaaaaaaagggcatttagatg |
4952108 |
T |
|
| Q |
106 |
ttatgcagtttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacggaaggcaatcatgttcgag |
205 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4952107 |
ttatgcactttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacggaaggtaatcatgttcgag |
4952008 |
T |
|
| Q |
206 |
gaactgtcgagcaccaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccacttcggctagtcctaaccttggttcaaac |
305 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4952007 |
gaactgtcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccacttcggctagacctaaccttggttcaaac |
4951908 |
T |
|
| Q |
306 |
ttgacagttgacacctgttcttatcacatttatcctaccatatagcagttcttaggaacattgatctgacaaaatcagttttgacaaacatatgtttggt |
405 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||| |
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| T |
4951907 |
ttgacagttgactcctattcttatcacatttatcctaccatatagcagttcttaggagcattgatatgagaagatcagttttgacaaacatatgtttggt |
4951808 |
T |
|
| Q |
406 |
ttgatgt |
412 |
Q |
| |
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||||||| |
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| T |
4951807 |
ttgatgt |
4951801 |
T |
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