View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9781_high_4 (Length: 380)
Name: NF9781_high_4
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9781_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 13909166 - 13909529
Alignment:
| Q |
1 |
tactcaaattctacaacatatattcatcactatctattccaattctcattccttttccctctataaatagctaacacaaccgccatctctcaccttattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13909166 |
tactcaaattctacaacatatattcatcactatctattccaattctcattccttttccctctataaatagctaaaacaaccgccatctctcaccttattg |
13909265 |
T |
|
| Q |
101 |
ttttgtgcactcaactattataccataccatgcaactattcacttcacttactaattcttgtttagatttttctcaccctttcattatattgctcctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13909266 |
ttttgtgcactcaactattataccataccatgcaactattcacttcacttactaattcttgtttagatttttctcaccctttcattatattgctcctctt |
13909365 |
T |
|
| Q |
201 |
ttttactatccttcctttccttcaatggtggaaacaccatagagataaagacaaacgtttacctcctggttcaatgggttggccttactttggagagacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13909366 |
ttttactatccttcctttccttcaatggtggaaacaccatagagataaagacaaacgtttacctcctggttcaatgggttggccttactttggagagacc |
13909465 |
T |
|
| Q |
301 |
ctcaaactctacactcaaaatccaaattccttcttctccacaaggcagaaaaggtatacaaaaa |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13909466 |
ctcaaactctacactcaaaatccaaattccttcttctccacaaggcagaaaaggtatacaaaaa |
13909529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University