View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9781_low_12 (Length: 250)
Name: NF9781_low_12
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9781_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5180619 - 5180380
Alignment:
| Q |
1 |
cctgtatacctttgtataggcaacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatcctatagagatgttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180619 |
cctgtatacctttgtataggcaacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatcctatagagatgttaat |
5180520 |
T |
|
| Q |
101 |
ttaagttacaaaccttccgtgatatatctagtttatggcatgtgactctaactctattagtactcagtatgaattattattgaaacatcttattcgtcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180519 |
ttaagttacaaaccttccgtgatatatctagttttttgcatgtgactctaactctattagtactcagtatgaattattattgaaacatcttattcgtcga |
5180420 |
T |
|
| Q |
201 |
atatatttttattccacaagagttcattcacatgtctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180419 |
atatatttttattccacaagagttcattcacatgtctctg |
5180380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 5255951 - 5255760
Alignment:
| Q |
1 |
cctgtatacctttgtataggcaacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatcctatagagatgttaat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
5255951 |
cctgcatacctttgtataggcaacaattgttttccatttttggctgaagtttctagattttatccatgctaagtttatgtaatcctatagggatgttaat |
5255852 |
T |
|
| Q |
101 |
ttaagttacaaaccttccgtgatatatctagtttatggcatgtgactctaactctattagtactcag-tatgaattattattgaaacatctt |
191 |
Q |
| |
|
|||||||||||||||||| | | |||||||||| |||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
5255851 |
ttaagttacaaaccttccatcttgtatctagtttttggcatgtgactctaattctattagtactcagttttgaattattattgaaacatctt |
5255760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 5283051 - 5282871
Alignment:
| Q |
13 |
tgtataggcaacaa-ttgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatcctatagagatgttaatttaagttacaa |
111 |
Q |
| |
|
|||||||||||||| |||| | | |||| ||||||||||| |||||| |||| |||||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
5283051 |
tgtataggcaacaagttgtatctcttttttggctgaagtttctagattgtatcaatgctaagtttttgtaatactctagagatgttaattgaagttacaa |
5282952 |
T |
|
| Q |
112 |
accttccgtgatatatctagtttatggcatgtgactctaactctattagtactcag-tatgaattattattgaaacatctt |
191 |
Q |
| |
|
|||| | | |||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
5282951 |
acctcctattttatatctagtttttggcatgtgactctaattctgttagtactcagttttgaattattatcgaaacatctt |
5282871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 23127237 - 23127158
Alignment:
| Q |
8 |
acctttgtataggcaacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatccta |
87 |
Q |
| |
|
|||||||||| |||||||||| || | |||||| || |||||||| |||||||||| |||| ||| |||||||||||||| |
|
|
| T |
23127237 |
acctttgtattggcaacaattattctgcatttttggatgaagtttctagattttatgcatggtaaatttttgtaatccta |
23127158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 5334555 - 5334612
Alignment:
| Q |
24 |
caattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgta |
81 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||| | | |||||||| |
|
|
| T |
5334555 |
caattgttttccatttttggctgaagtttctagattttatccatggtgaatttttgta |
5334612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 5351832 - 5351878
Alignment:
| Q |
22 |
aacaattgttttccattttcggctgaagtttttagattttatccatg |
68 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| | ||||||||||||| |
|
|
| T |
5351832 |
aacaattgttttccatttttggctgtagtttcttgattttatccatg |
5351878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 5439494 - 5439575
Alignment:
| Q |
11 |
tttgtataggcaacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatcctatagaga |
93 |
Q |
| |
|
||||||| |||| ||| |||||| |||||| || |||||||||| ||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
5439494 |
tttgtattggcatcaaatgtttttcatttt-ggttgaagtttttttattttatccattgtaattttttgtaatcctaaagaga |
5439575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 5687572 - 5687616
Alignment:
| Q |
21 |
caacaattgttttccattttcggctgaagtttttagattttatcc |
65 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||| |||||||||||| |
|
|
| T |
5687572 |
caacaattgttttccaattttggctgcagtttctagattttatcc |
5687616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 47985177 - 47985112
Alignment:
| Q |
22 |
aacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatccta |
87 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||| |||| ||| |||||||||||||| |
|
|
| T |
47985177 |
aacaattgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatccta |
47985112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 47994464 - 47994399
Alignment:
| Q |
22 |
aacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatccta |
87 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||| |||| ||| |||||||||||||| |
|
|
| T |
47994464 |
aacaattgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatccta |
47994399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 48003751 - 48003686
Alignment:
| Q |
22 |
aacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatccta |
87 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||| |||| ||| |||||||||||||| |
|
|
| T |
48003751 |
aacaattgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatccta |
48003686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 48013036 - 48012971
Alignment:
| Q |
22 |
aacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatccta |
87 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||| |||| ||| |||||||||||||| |
|
|
| T |
48013036 |
aacaattgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatccta |
48012971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University