View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9781_low_13 (Length: 243)
Name: NF9781_low_13
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9781_low_13 |
 | |
|
| [»] scaffold0400 (3 HSPs) |
| | |
|
| [»] scaffold0365 (3 HSPs) |
| | |
|
| [»] scaffold0289 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14522208 - 14521984
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14522208 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
14522109 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14522108 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcttggagaagggtagc |
14522009 |
T |
|
| Q |
201 |
ttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14522008 |
ttggacaacattttgaaggacaatg |
14521984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15041115 - 15041339
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
15041115 |
cagagttgcctactggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaagttagattagtgc |
15041214 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15041215 |
ttagacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcttggagaagggtagc |
15041314 |
T |
|
| Q |
201 |
ttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15041315 |
atggacaacattttgaaggacaatg |
15041339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15032980 - 15033204
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||| |||||| ||| ||||| ||| | ||||||| |||||||| || |||||| ||| |
|
|
| T |
15032980 |
cagagttgcccacaggtcaagttgtagctgtgaagaaacttcattcattacaaaatgaagaaatgcctaatctgaaagctttcacaaatgagatccatgc |
15033079 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15033080 |
tttgacagaaattcgacatcgcaacattgtgaagttatacgggttttgttcacatcgactacactcatttttggtttatgaattcttggagaagggtagc |
15033179 |
T |
|
| Q |
201 |
ttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
15033180 |
atggacatcattttgaaggacaatg |
15033204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15037547 - 15037771
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||| |||||| ||| ||||| || | |||||||| ||| |||| || |||||| ||| |
|
|
| T |
15037547 |
cagagttgcccacaggtcaagttgtagctgtgaagaaacttcattcattacaaaatgaggaaatgtctaatctgaaatctttcacaaatgagatccatgc |
15037646 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
15037647 |
tttgacagaaattcgacatcgcaacattgttaagttatatgggttttgttcacatcgactacactcgtttttggtttatgaattcttggcgaagggtagc |
15037746 |
T |
|
| Q |
201 |
ttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15037747 |
atggacaacattttgaaggacaatg |
15037771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15017643 - 15017867
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |||| | ||| ||||| ||| | |||||| | |||||||| || ||||||| ||| |
|
|
| T |
15017643 |
cagagttgccttcaggtcaagttgtagctgtgaagaaacttcatttattacaaaatgaagaaatgtctaatatgaaagctttcacaaatgagattcatgc |
15017742 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15017743 |
tttgacagaaattcgacatcgcaacattgtgaagttatacgggttttgtttacatcgactacactcatttttggtttatgaattcttggagaagggtagt |
15017842 |
T |
|
| Q |
201 |
ttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
15017843 |
gtggacatcattttgaaggacaatg |
15017867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 15011534 - 15011752
Alignment:
| Q |
7 |
tgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgac |
106 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| || ||| ||| ||||| ||| | | |||| |||||||| || |||||| ||||||||| |
|
|
| T |
15011534 |
tgcctacaggtcaagttgtagctgtgaagaaacttcactcattacaaaatgaagaaatgccaaatcggaaagctttcacaaatgagatccatgctttgac |
15011633 |
T |
|
| Q |
107 |
agaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggac |
206 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15011634 |
agaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaattcttggagaagggtagcttggac |
15011733 |
T |
|
| Q |
207 |
aacattttgaaggacaatg |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15011734 |
aacattttgaaggacaatg |
15011752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14532329 - 14532105
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||| || ||| ||| ||||| ||| | |||||||| ||||| || || |||||| ||| |
|
|
| T |
14532329 |
cagagttgcctacaggtcaagttgttgctgtgaagaaacttcactcattacaaaatgaagaaatgtctaatctgaaagcattcacaaatgagatccatgc |
14532230 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
||||| |||||| ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
14532229 |
tttgaaagaaattcgacatcgcaatattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaattcttggaaaagggtagc |
14532130 |
T |
|
| Q |
201 |
ttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
14532129 |
atggacaacattttgaaggacaatg |
14532105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 15002641 - 15002859
Alignment:
| Q |
7 |
tgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgctttgac |
106 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| || ||| ||| ||||| ||| | | ||| |||||||| || |||||| ||||||||| |
|
|
| T |
15002641 |
tgcctacaggtcaagttgtagctgtgaagaaacttcactcattacaaaatgaagaaatgccaaataggaaagctttcacaaatgagatccatgctttgac |
15002740 |
T |
|
| Q |
107 |
agaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagcttggac |
206 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
15002741 |
agaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaattcttggcgaagggtagcatggac |
15002840 |
T |
|
| Q |
207 |
aacattttgaaggacaatg |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15002841 |
aacattttgaaggacaatg |
15002859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 14468331 - 14468547
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||||| | || ||||| ||||| |||||| ||||||| || |
|
|
| T |
14468331 |
cagagttgcctacaggtcaagttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcatttgcaagtgagatccaagc |
14468430 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
||| ||||||||||||||||| |||||||| ||||||| || | ||||||||||| | | |||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
14468431 |
tttaacagaaatccgacatcgaaacattgtgaagttatgcggttattgttcacatccattgcactcatttttggtttatgagttcttggaaaagggtagc |
14468530 |
T |
|
| Q |
201 |
ttggacaacattttgaa |
217 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
14468531 |
gtggacaagattttgaa |
14468547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 14483279 - 14483495
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| ||||| || || |||||||||||||||||||||||| ||| ||||||||| | || ||||| |||||||||||| ||||||| | |
|
|
| T |
14483279 |
cagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcttttgcaagtgagatccaacc |
14483378 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
||| |||||||||||||||| |||||||| |||||||| |||| ||||||||||| | | |||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
14483379 |
tttagcagaaatccgacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggtttatgagttcttggagaagggtagt |
14483478 |
T |
|
| Q |
201 |
ttggacaacattttgaa |
217 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
14483479 |
ctggataagattttgaa |
14483495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 14504510 - 14504726
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| ||||| || || |||||||||||||||||||||||| ||| ||||||||| | || ||| | |||||||||||| ||||||| | || |
|
|
| T |
14504510 |
cagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatttgaaagcttttgcaagtgagataaaagc |
14504609 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
||| ||||||| ||||||||| |||||||| |||||||| |||| ||||||||||| | | |||||||||||||||||||| ||| |||||||||| || |
|
|
| T |
14504610 |
tttaacagaaagccgacatcgaaacattgtgaagttatacgggtattgttcacatccattgcactcatttttggtttatgagttcttggagaagggcagt |
14504709 |
T |
|
| Q |
201 |
ttggacaacattttgaa |
217 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
14504710 |
ctggataagattttgaa |
14504726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 13413 - 13540
Alignment:
| Q |
98 |
tgctttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggt |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13413 |
tgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaatttttggagaagggt |
13512 |
T |
|
| Q |
198 |
agcttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
||| || ||||||||||||||||||||| |
|
|
| T |
13513 |
agcatgtacaacattttgaaggacaatg |
13540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7016 - 7240
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
||||||| || ||||| ||||| ||||| |||||||||||||||||| ||| ||||||||| || ||||| |||||||| ||| ||||||| || |
|
|
| T |
7016 |
cagagttccccacaggacaagttgtagcggtgaagaaactccattcattacaaaatggagagacgtccaatctgaaagctttcgcaagtgagatccaagc |
7115 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
||| || |||||||| ||||| |||||||| |||||||| |||| ||||||||||| | | |||||||||||||||||||| ||| ||||||| || || |
|
|
| T |
7116 |
tttaactgaaatccggcatcgaaacattgtgaagttatacgggtattgttcacatccattgcactcatttttggtttatgagttcttggagaaaggcagt |
7215 |
T |
|
| Q |
201 |
ttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
||||||| |||||||| ||||||| |
|
|
| T |
7216 |
gtggacaagattttgaaagacaatg |
7240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13316 - 13360
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccatt |
45 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
13316 |
cagagttgccttcaggtcaagttgtagctgtgaagaaacttcatt |
13360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 14056 - 14183
Alignment:
| Q |
98 |
tgctttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggt |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14056 |
tgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggtttatgaatttttggagaagggt |
14155 |
T |
|
| Q |
198 |
agcttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
||| || ||||||||||||||||||||| |
|
|
| T |
14156 |
agcatgtacaacattttgaaggacaatg |
14183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7660 - 7884
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
||||||| || ||||| ||||| ||||| |||||||||||||||||| ||| ||||||||| || ||||| |||||||| ||| ||||||| || |
|
|
| T |
7660 |
cagagttccccacaggacaagttgtagcggtgaagaaactccattcattacaaaatggagagacgtccaatctgaaagctttcgcaagtgagatccaagc |
7759 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcctggagaagggtagc |
200 |
Q |
| |
|
||| || |||||||| ||||| |||||||| |||||||| |||| ||||||||||| | | |||||||||||||||||||| ||| ||||||| || || |
|
|
| T |
7760 |
tttaactgaaatccggcatcgaaacattgtgaagttatacgggtattgttcacatccattgcactcatttttggtttatgagttcttggagaaaggcagt |
7859 |
T |
|
| Q |
201 |
ttggacaacattttgaaggacaatg |
225 |
Q |
| |
|
||||||| |||||||| ||||||| |
|
|
| T |
7860 |
gtggacaagattttgaaagacaatg |
7884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13959 - 14003
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccatt |
45 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
13959 |
cagagttgccttcaggtcaagttgtagctgtgaagaaacttcatt |
14003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 17027417 - 17027597
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| | || ||||| |||||||||||||||||||||||| ||| | |||||| || ||| | |||||||||||| ||||||| | || |
|
|
| T |
17027417 |
cagagttgcctattggacaagttgtagctgtgaagaaactccattcattacaacgtggagaaacgtccaatttgaaagcttttgcaagtgagatcaaagc |
17027516 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatga |
181 |
Q |
| |
|
||| ||||||||||||||| | ||||||| |||||||| |||| ||||||||||| | | ||||||||||| |||||||| |
|
|
| T |
17027517 |
tttaacagaaatccgacatagaaacattgctaagttatacgggtattgttcacatccattgcactcatttttagtttatga |
17027597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 17557909 - 17558089
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| | || ||||| |||||||||||||||||||||||| ||| | |||||| || ||| | |||||||||||| ||||||| | || |
|
|
| T |
17557909 |
cagagttgcctattggacaagttgtagctgtgaagaaactccattcattacaacgtggagaaacgtccaatttgaaagcttttgcaagtgagatcaaagc |
17558008 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatga |
181 |
Q |
| |
|
||| ||||||||||||||| | ||||||| |||||||| |||| ||||||||||| | | ||||||||||| |||||||| |
|
|
| T |
17558009 |
tttaacagaaatccgacatagaaacattgctaagttatacgggtattgttcacatccattgcactcatttttagtttatga |
17558089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 5152 - 4999
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| |||||||||| || ||||| || |||||||||||| || |||||| || ||| |||||||| ||||||| |||||| | || |
|
|
| T |
5152 |
cagagttgccctcaggtcaagtagttgctgttaaaaaactccattcaataacaaatgcggaaaattctgatctaaaatgttttgcaaatgagatcaaagc |
5053 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcaca |
154 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||| ||||||| | ||||||||| |
|
|
| T |
5052 |
tttgacagaaattcgacattgtaacattgtgaagctatatggatattgttcaca |
4999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 13985 - 13832
Alignment:
| Q |
1 |
cagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaggtgagattagtgc |
100 |
Q |
| |
|
|||||||||| |||||||||| || ||||| || |||||||||||| || |||||| || ||| |||||||| ||||||| |||||| | || |
|
|
| T |
13985 |
cagagttgccctcaggtcaagtagttgctgttaaaaaactccattcaataacaaatgcggaaaattctgatctaaaatgttttgcaaatgagatcaaagc |
13886 |
T |
|
| Q |
101 |
tttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcaca |
154 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||| ||||||| | ||||||||| |
|
|
| T |
13885 |
tttgacagaaattcgacattgtaacattgtgaagctatatggatattgttcaca |
13832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 37027396 - 37027481
Alignment:
| Q |
102 |
ttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcct |
187 |
Q |
| |
|
|||||| ||||| |||||| |||||||| ||||||||||| ||||||||||||| || ||| | ||| |||||||||| ||||| |
|
|
| T |
37027396 |
ttgacacaaatcaaacatcgtaacattgtgaagttatatggattttgttcacatccacgccacgcttttgtggtttatgacttcct |
37027481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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