View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9781_low_3 (Length: 401)
Name: NF9781_low_3
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9781_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 47116781 - 47117170
Alignment:
| Q |
1 |
aagcttcctcatacccttgttatttcatttccttatgatatctcnnnnnnnctgacattgttttgtttcatcgcttctcaggtaattacaatagttatat |
100 |
Q |
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| T |
47116781 |
aagcttcctcatacccttgttatttcatttccttatgatatctctttttttctgacattgttttgtttcatcgcttctcaggtaattacaatagttatat |
47116880 |
T |
|
| Q |
101 |
tttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaagg |
200 |
Q |
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| T |
47116881 |
tttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaagg |
47116980 |
T |
|
| Q |
201 |
taagcaatatcaacgtatcaatgactcgatcgatcaccttttaacgattatttttaatttcttgttctgtagatggataggcggagaatgtatgataggc |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47116981 |
taagcaatatcaacgtatcaatgac----tcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggc |
47117076 |
T |
|
| Q |
301 |
aacaaagctcaacgggaacgccaacatcaccatcttcgccggtgatgatgtcgccattgaaccgacatgctcgtgcaggttccacaggttctgc |
394 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47117077 |
aacaaagctcaacgggaacgccaacatcaccgtcttcaccggtgatgatgtcgccattgaatcgacatgctcgtgcaggttccacaggttctgc |
47117170 |
T |
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