View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9781_low_5 (Length: 348)
Name: NF9781_low_5
Description: NF9781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9781_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 6009470 - 6009808
Alignment:
| Q |
7 |
ggtacaaagtttcttgtcttagatattttccctcgttttgctagaaaacatagttcaaaatgatgaagaagaagctgaacgctaacagtgaaagtcgtgg |
106 |
Q |
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| T |
6009470 |
ggtacaaagtttcttgtcttagatattttccctcgttttgctagaaaacatagttcaaaatgatgaagaagaagctgaacgctaacagtgaaagtcgtgg |
6009569 |
T |
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| Q |
107 |
tacaagagaaaccatgtcgtctcacaaaagagaacaagaagaataccaatgggaaatgagaccaggaggaatgttggtacaaaaacggactgggaaactc |
206 |
Q |
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| T |
6009570 |
tacaagagaaaccatgtcgtctcacaaaagagaacaagaagaataccaatgggaaatgagaccaggaggaatgttggtacaaaaacggactgggaaactc |
6009669 |
T |
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| Q |
207 |
gatgctctggtagctaatttgcgccttcgaatcgcttatggtgcactccgttacgatatatgcgtcagttccatggccacatttggttagtgtttattga |
306 |
Q |
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| T |
6009670 |
gatgctctggtagctaatttgcgccttcgaatcgcttatggtgcactccgttacgatatatgcgtcagttccatggccacatttggttagtgtttattga |
6009769 |
T |
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| Q |
307 |
ataattttgttgattatgtgactaattcacctttgcttc |
345 |
Q |
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| T |
6009770 |
ataattttgttgattatgtgactaattcacctttgcttc |
6009808 |
T |
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