View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_high_18 (Length: 309)
Name: NF9782A_high_18
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_high_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 131 - 309
Target Start/End: Complemental strand, 33507346 - 33507168
Alignment:
| Q |
131 |
ttcaacactgcgaggtttcggaagagctatagaggttgctcacaccacactatttaatggtaaggttttcatgttcttattctgttatgcttctcatcta |
230 |
Q |
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| T |
33507346 |
ttcaacactgcgaggtttcggaagagctataggggttgctcacaccacactatttaatggtaaggttttcatgttcttattctgttatgcttctcatcta |
33507247 |
T |
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| Q |
231 |
tctatagttaactaaagggttgtttcataactctttgtgaaaattctttattttaatgtttaatttctgcatattttga |
309 |
Q |
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| T |
33507246 |
tctatagttaactaaagggttgtttcataacactttgtgaattttttttattttaatgtttaatttctgcatattttga |
33507168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 33479004 - 33478944
Alignment:
| Q |
230 |
atctatagttaactaaagggttgtttcataactct----ttgtgaaaattctttattttaa |
286 |
Q |
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| T |
33479004 |
atctgtagttaactaaagggttgtttcataactctatgcttttgaaaattctttactttaa |
33478944 |
T |
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