View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_high_30 (Length: 215)
Name: NF9782A_high_30
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 33119950 - 33120118
Alignment:
| Q |
25 |
caatataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatatac |
124 |
Q |
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| T |
33119950 |
caatataggatggttggcgatagttggtttagcagtctacataatattcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacac |
33120049 |
T |
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| Q |
125 |
cctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtt |
193 |
Q |
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| T |
33120050 |
cctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtt |
33120118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 33116784 - 33116906
Alignment:
| Q |
71 |
ttcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaacag |
170 |
Q |
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| T |
33116784 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
33116883 |
T |
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| Q |
171 |
tgtgggtctctaacctcattgtt |
193 |
Q |
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| T |
33116884 |
tttggatctcaaaccttattgtt |
33116906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 21492025 - 21491899
Alignment:
| Q |
60 |
tctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagc |
159 |
Q |
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| T |
21492025 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
21491926 |
T |
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| Q |
160 |
atcaacaacagtgtgggtctctaacct |
186 |
Q |
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| T |
21491925 |
atcaacaacagtgtgggtttccaacct |
21491899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 21558576 - 21558479
Alignment:
| Q |
69 |
tattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaaca |
166 |
Q |
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| T |
21558576 |
tattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
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