View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_103 (Length: 223)
Name: NF9782A_low_103
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_103 |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 45141703 - 45141488
Alignment:
| Q |
8 |
atggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatt |
107 |
Q |
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| T |
45141703 |
atggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatt |
45141604 |
T |
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| Q |
108 |
tttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttg |
207 |
Q |
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| T |
45141603 |
tttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttg |
45141504 |
T |
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| Q |
208 |
ctggccaaattcatca |
223 |
Q |
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| T |
45141503 |
gtgacccaattcatca |
45141488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 45152294 - 45152131
Alignment:
| Q |
60 |
caccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatc |
159 |
Q |
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| T |
45152294 |
cacctccaattccagcattgctgaacatgatgtctaaggttccatatttttccaatgcaaaagctacggtttcctcaacttgtttttcatcactcacatc |
45152195 |
T |
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| Q |
160 |
acaatggtggtaactcactttgtctaacccaattgaagttgcaacttgctggccaaattcatca |
223 |
Q |
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| T |
45152194 |
acaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatca |
45152131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 38256167 - 38255955
Alignment:
| Q |
8 |
atggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatt |
107 |
Q |
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| T |
38256167 |
atggtgttgtcaaattcatttaggttaaattctagtatgct---agataaaggaccagcgttaccagcattgctgaacatgatgtctaaggtaccatatc |
38256071 |
T |
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| Q |
108 |
tttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttg |
207 |
Q |
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| T |
38256070 |
tctccaacgtgaaagcaacaatttcctcaacttgtttctcctctctcacgtcacagtggtggtaactcactttgtctaacccaattgaagttgcaagttg |
38255971 |
T |
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| Q |
208 |
ctggccaaattcatca |
223 |
Q |
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|| || ||||||||| |
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| T |
38255970 |
gtgacccaattcatca |
38255955 |
T |
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