View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_107 (Length: 222)
Name: NF9782A_low_107
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_107 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 33025806 - 33026026
Alignment:
| Q |
2 |
catgattgagtcgtggtccagaggtgtgaggtatgatggaaaatccgatgatatcgcaaaggatttgttaaaaggtgctcttgatttgcaagagtctcta |
101 |
Q |
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| T |
33025806 |
catgattgagtcgtggtctagaggtgtgaggtacgatggaaaatccgatgatatcgcaaaggatttgttaaaaggtgctcttgatttgcaagagtctcta |
33025905 |
T |
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| Q |
102 |
gagatgcttcgaaaggtgcaggaagcttcgaatagtatgggtcgatcgaagagaagacaagaggagaaacatgaaagaagtaaaattgatgcacatgtga |
201 |
Q |
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|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33025906 |
gagatgcttcgacaggtgcaagaagcttcgaatagtatgagtcgatcgaagagaagacaagaggagaaacatgaaagaagtaaaattgatgcacatgtga |
33026005 |
T |
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| Q |
202 |
atgatggaaatagatcaacac |
222 |
Q |
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||||||||||||||||||||| |
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| T |
33026006 |
atgatggaaatagatcaacac |
33026026 |
T |
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