View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9782A_low_112 (Length: 217)
Name: NF9782A_low_112
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_112 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 17167634 - 17167526
Alignment:
| Q |
84 |
tttgatatgtttaagtcactacaaaatagtcaaattttgtttttccttataaaaacaaaatcttactatttgtcctccaaatgatttcttttaagtagtt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
17167634 |
tttgatatgtttaagtcactacaaaatagtctaatttttttttccgttataaaaacaaaatcttacaatttgtcctccaaatgttttcttttaagtagtt |
17167535 |
T |
|
| Q |
184 |
ttagtccat |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
17167534 |
ttagtccat |
17167526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 17173211 - 17173103
Alignment:
| Q |
84 |
tttgatatgtttaagtcactacaaaatagtcaaattttgtttttccttataaaaacaaaatcttactatttgtcctccaaatgatttcttttaagtagtt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
17173211 |
tttgatatgtttaagtcactacaaaatagtctaatttttttttccgttataaaaacaaaatcttacaatttgtcctccaaatgttttcttttaagtagtt |
17173112 |
T |
|
| Q |
184 |
ttagtccat |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
17173111 |
ttagtccat |
17173103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 17251590 - 17251649
Alignment:
| Q |
133 |
taaaaacaaaatcttactatttgtcctccaaatgatttcttttaagtagttttagtccat |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17251590 |
taaaaacaaaatcttactatttgtcctccaaatgatttcttttaagtagttttagtccat |
17251649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 17251188 - 17251245
Alignment:
| Q |
84 |
tttgatatgtttaagtcactacaaaatagtcaaattttgtttttccttataaaaacaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17251188 |
tttgatatgtttaagtcactacaaaatagtcaaattttgtttttgcttataaaaacaa |
17251245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 17250438 - 17250506
Alignment:
| Q |
21 |
atgctctacatattattaataaaaaggttaaataagtcaattgtccctcaaaatataaaaacatttgat |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| || ||||||| ||||||||||| |
|
|
| T |
17250438 |
atgctctacatattattaataaaaaggttaaataagtaaatggtccttccaaatatacaaacatttgat |
17250506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University