View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_116 (Length: 213)

Name: NF9782A_low_116
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_116
NF9782A_low_116
[»] chr2 (8 HSPs)
chr2 (16-211)||(27888509-27888704)
chr2 (20-211)||(1533039-1533230)
chr2 (16-211)||(40899961-40900156)
chr2 (21-145)||(6186572-6186696)
chr2 (21-145)||(14951138-14951262)
chr2 (22-146)||(9910316-9910440)
chr2 (21-146)||(38531659-38531783)
chr2 (20-58)||(6705342-6705380)
[»] chr1 (12 HSPs)
chr1 (20-211)||(27786955-27787146)
chr1 (20-211)||(25537450-25537637)
chr1 (23-196)||(29099279-29099452)
chr1 (25-139)||(14351498-14351612)
chr1 (21-135)||(2077718-2077832)
chr1 (29-136)||(10494544-10494651)
chr1 (60-144)||(26842251-26842335)
chr1 (89-194)||(47896528-47896632)
chr1 (20-136)||(11814345-11814461)
chr1 (91-165)||(4654036-4654109)
chr1 (20-58)||(15495710-15495748)
chr1 (99-146)||(8039051-8039101)
[»] chr3 (5 HSPs)
chr3 (16-211)||(46743101-46743296)
chr3 (22-146)||(31698936-31699060)
chr3 (21-93)||(52984642-52984714)
chr3 (20-70)||(52991655-52991705)
chr3 (89-194)||(11387285-11387389)
[»] chr7 (8 HSPs)
chr7 (21-211)||(32978958-32979148)
chr7 (20-211)||(21590751-21590942)
chr7 (89-208)||(34293730-34293849)
chr7 (22-136)||(24717746-24717860)
chr7 (89-208)||(36582649-36582768)
chr7 (29-136)||(43047987-43048094)
chr7 (89-194)||(10365596-10365700)
chr7 (42-146)||(26711885-26711990)
[»] chr8 (6 HSPs)
chr8 (19-211)||(10181800-10181992)
chr8 (20-211)||(15050255-15050443)
chr8 (21-122)||(39580355-39580456)
chr8 (22-137)||(3763285-3763400)
chr8 (22-137)||(5515020-5515135)
chr8 (96-194)||(38499049-38499146)
[»] chr5 (8 HSPs)
chr5 (19-165)||(24867348-24867494)
chr5 (29-165)||(26331679-26331815)
chr5 (25-139)||(12155982-12156096)
chr5 (15-165)||(26331338-26331488)
chr5 (22-150)||(40600165-40600293)
chr5 (22-139)||(42269097-42269214)
chr5 (32-146)||(11470580-11470695)
chr5 (20-61)||(40680708-40680748)
[»] chr6 (8 HSPs)
chr6 (20-161)||(10670283-10670424)
chr6 (21-136)||(30845121-30845236)
chr6 (21-145)||(24350488-24350612)
chr6 (22-150)||(10772594-10772722)
chr6 (89-208)||(9566641-9566760)
chr6 (89-194)||(11366564-11366667)
chr6 (21-146)||(24842886-24843010)
chr6 (20-58)||(31026650-31026688)
[»] chr4 (7 HSPs)
chr4 (16-211)||(42677816-42678010)
chr4 (15-211)||(45872857-45873052)
chr4 (21-145)||(52635383-52635506)
chr4 (21-79)||(55728388-55728446)
chr4 (153-211)||(12130396-12130454)
chr4 (20-57)||(12130355-12130392)
chr4 (20-58)||(14440940-14440978)
[»] scaffold0974 (1 HSPs)
scaffold0974 (22-146)||(2692-2816)
[»] scaffold0005 (1 HSPs)
scaffold0005 (89-194)||(269761-269865)
[»] scaffold0083 (1 HSPs)
scaffold0083 (23-93)||(2886-2958)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 27888509 - 27888704
Alignment:
Q  16 acatcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  27888509 acatcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagtagaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaat 27888608  T
Q  116 aaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||    
T  27888609 aaccatcgaacctaccaaaaactcatgtaaccgcagtttaaacaagccacgccagctaacatccgtgtgtttgaaaaccccatcaacaacaaactc 27888704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 1533039 - 1533230
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacc 119  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  1533039 caaaccaagaagtcatctccaaaaaccaaagtccaaacgtttgcgcaatagcagaaacaaatcttgtgccaaaccattaaaaaacctctccaaaataacc 1533138  T
Q  120 atcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    ||| ||| ||||| |||| |||||||  |||  ||||||||| ||   ||||||| ||| |||| ||||||||||||||||||| |||||||    
T  1533139 atcaaacttaccataaacccatgtaatcgcaccttaaacaagtcataccatctaatatccgtgtatttgaaaaccccatcaacaacaaactc 1533230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 40899961 - 40900156
Alignment:
Q  16 acatcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaat 115  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||  ||| ||| | |||||||||||||| |||||| | ||||||||||||||||||    
T  40899961 acatcaaaccaagaagccatctccaaaaaccaaattctaaacgtctatgcattagtagaaacaaatcttgtgccaaaccgtaaaaaaacctctccaaaat 40900060  T
Q  116 aaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    | ||||  |||||||||||||  |||||||| | |  |||||||||||| | | |||||||||  ||| |||||||||| ||||| || |||||||    
T  40900061 atccatgaaacctaccaaaaatccatgtaaccgaaccttaaacaagccatgacgtctaacatccatgtatttgaaaacctcatcatcaacaaactc 40900156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 6186696 - 6186572
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    ||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||||||||||||| ||  |||||| || ||||||||  |    
T  6186696 aaaccaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcaaaaacaaatcttgtgtcaaaccgttgcaaaaccccttcaaaataatta 6186597  T
Q  121 tcgaacctaccaaaaactcatgtaa 145  Q
    || ||| |||||||||||| |||||    
T  6186596 tcaaacttaccaaaaactcgtgtaa 6186572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 14951262 - 14951138
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    |||||||||| ||||||||||| || |||||||||||  | ||||||||||| |||||||||||||| |||||| ||  |||||| ||||||||||||||    
T  14951262 aaaccaagaaatcatctccaaacactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaaccgttgcaaaacccctccaaaataacca 14951163  T
Q  121 tcgaacctaccaaaaactcatgtaa 145  Q
    || |||||||||||||||| |||||    
T  14951162 tcaaacctaccaaaaactcgtgtaa 14951138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 9910316 - 9910440
Alignment:
Q  22 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 121  Q
    |||||| |||||||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||| |||||| ||  ||||||  || |||||||| ||    
T  9910316 aaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagcagaaacaagtcttgtgacaaaccgttgcaaaacccatcaaaaataactat 9910415  T
Q  122 cgaacctaccaaaaactcatgtaac 146  Q
    | | |||||||||||||| ||||||    
T  9910416 caatcctaccaaaaactcgtgtaac 9910440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 38531783 - 38531659
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||| | ||||| ||||||||||||||  ||||  ||  |||||| |||||||| |||||    
T  38531783 aaaccaaaaagtcatctccaaaaaccaacgtctaaacacctgcgtagtagcagaaacaaatcttgtgctaaactgttgcaaaacc-ctccaaaagaacca 38531685  T
Q  121 tcgaacctaccaaaaactcatgtaac 146  Q
    || |||||||||||||| | ||||||    
T  38531684 tcaaacctaccaaaaacccgtgtaac 38531659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 6705342 - 6705380
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacg 58  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  6705342 caaaccaagaagtcatcaccaaaaaccaaagtctaaacg 6705380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 27787146 - 27786955
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacc 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||  | |||||| ||||||||||||||||||||||||    
T  27787146 caaaccaagaagtcatctccaaaaaccaaagtccaaacgtctgcgcaatagcagaaacaaatcttaagccaaaccattaaaaaacctctccaaaataacc 27787047  T
Q  120 atcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    ||| |||||||||||||| ||||||||||||  |||||||||||||  ||||||||||| |||| ||||||||||||||||||| |||||||    
T  27787046 atcaaacctaccaaaaacccatgtaactgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaaccccatcaacaacaaactc 27786955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 25537450 - 25537637
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacc 119  Q
    ||||||||||| ||||||  ||||| ||||||||||||| || || ||||||| ||||||||||||||||| ||| || ||||||||||||  |||||||    
T  25537450 caaaccaagaaatcatcta-aaaaatcaaagtctaaacgcctacgaaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctcc--aataacc 25537546  T
Q  120 atcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    ||| ||||||||||||||||||||||| |||  |||||||||||||  | |||||||||  ||| |||||||| ||| |||||| |||||||    
T  25537547 atcaaacctaccaaaaactcatgtaaccgcaccttaaacaagccacaccgtctaacatc-atgtatttgaaaatcccctcaacaacaaactc 25537637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 29099279 - 29099452
Alignment:
Q  23 accaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatc 122  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| || | | || ||||||||||||||||||||||||    
T  29099279 accaagaagtcatctccaaaaaccaaagtctaaacgtttgcgcaatagcataaacaaattttgtgccatatcgttgaaaaacctctccaaaataaccatc 29099378  T
Q  123 gaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaacccc 196  Q
     ||| ||||||||   |||||||   |   |||||||||||||  |||||||||||  ||  ||||||||||||    
T  29099379 aaacttaccaaaagtccatgtaatcacgccttaaacaagccacaccatctaacatccatgcatttgaaaacccc 29099452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 14351612 - 14351498
Alignment:
Q  25 caagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatcga 124  Q
    ||||||||||||||||||||| |||||||||||  | ||||||||||| |||||||||||||| |||||| ||  |||||| |||||||||||||||| |    
T  14351612 caagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctccaaaataaccatcaa 14351513  T
Q  125 acctaccaaaaactc 139  Q
    |||||||||||||||    
T  14351512 acctaccaaaaactc 14351498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 2077832 - 2077718
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||  ||||| ||  ||||||  |||||||||| ||    
T  2077832 aaaccaaaaagtcatctccaaaaaccaaagtctaaacgtctgagcaatagcataaacaagtcttgtgcaaaaccgttgcaaaacccatccaaaataatca 2077733  T
Q  121 tcgaacctaccaaaa 135  Q
    || ||||||||||||    
T  2077732 tcaaacctaccaaaa 2077718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 10494544 - 10494651
Alignment:
Q  29 aagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatcgaacct 128  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||| |||||||||||||| |||||| ||  |||||| ||  |||||||||||| |||||    
T  10494544 aagtcatctccaaaaatcaaagtctaaacgcctttgcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctataaaataaccatcaaacct 10494643  T
Q  129 accaaaaa 136  Q
    ||||||||    
T  10494644 accaaaaa 10494651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 26842335 - 26842251
Alignment:
Q  60 ctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgta 144  Q
    ||||||||||| | ||||||||||||||||| ||| || ||||||||||||||| |||||||| |||||||||||||| ||||||    
T  26842335 ctgcgcaataggagaaacaaatcttgtgtcataccgttgaaaaacctctccaaactaaccatcaaacctaccaaaaacccatgta 26842251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 47896528 - 47896632
Alignment:
Q  89 caaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttg 188  Q
    |||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||| |||  |||||||| ||||  || |||||||| |||| ||||    
T  47896528 caaaccattaaaaaacctctccaaa-taaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaaccacaccagctaacatccgtgtatttg 47896626  T
Q  189 aaaacc 194  Q
    ||||||    
T  47896627 aaaacc 47896632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 11814345 - 11814461
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacc 119  Q
    ||||| || |||| ||||||||||||| |||||||||||  |||||||||||| ||| |||||||||| | |||  ||  |||||| ||||||| |||||    
T  11814345 caaactaaaaagtgatctccaaaaacctaagtctaaacgcttgcgcaatagcagaaataaatcttgtgcctaactgttgcaaaacccctccaaagtaacc 11814444  T
Q  120 atcgaacctaccaaaaa 136  Q
    ||| |||||| ||||||    
T  11814445 atcaaacctagcaaaaa 11814461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 4654109 - 4654036
Alignment:
Q  91 aacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccac 165  Q
    |||| |||||||||||||||||| ||| |||| || ||||||||||| |||||||| ||| ||||||||| ||||    
T  4654109 aaccgttaaaaaacctctccaaa-taatcatcaaatctaccaaaaacccatgtaaccgcactttaaacaaaccac 4654036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 15495710 - 15495748
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacg 58  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  15495710 caaaccaagaagtcatcaccaaaaaccaaagtctaaacg 15495748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 8039051 - 8039101
Alignment:
Q  99 aaaaacctctccaaa---ataaccatcgaacctaccaaaaactcatgtaac 146  Q
    |||||||||||||||   ||||||||| |||||||||||||| ||||||||    
T  8039051 aaaaacctctccaaataaataaccatcaaacctaccaaaaacccatgtaac 8039101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 46743296 - 46743101
Alignment:
Q  16 acatcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaat 115  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||    
T  46743296 acatcaaaccaagaagtcatctctaaaaaccaaagtccaaacgcccgcgcaatagcagaaacaaatcttgtgccaaaccattaaaaaacctatccaaaat 46743197  T
Q  116 aaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    ||||||| ||||||||||||||||||| ||  |||  |||||||||||||  ||||||||||| |||| ||||||||||||||||||| |||||||    
T  46743196 aaccatcaaacctaccaaaaactcatgcaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaaccccatcaacaacaaactc 46743101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 31698936 - 31699060
Alignment:
Q  22 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 121  Q
    |||||| |||| ||||||||||||||||||||||| | ||  |||||| || |||||| |||||||||||||  ||  ||||||  ||||||||||||||    
T  31698936 aaccaaaaagtaatctccaaaaaccaaagtctaaatgcctaagcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccat 31699035  T
Q  122 cgaacctaccaaaaactcatgtaac 146  Q
      | |||||||||||| | ||||||    
T  31699036 gaatcctaccaaaaacccgtgtaac 31699060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 52984714 - 52984642
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaac 93  Q
    ||||||||||||||||| ||||||| |||||||||||  | ||||||||||| |||||||||||||| |||||    
T  52984714 aaaccaagaagtcatctgcaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaac 52984642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 52991705 - 52991655
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatag 70  Q
    ||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  52991705 caaaccaagaagtcatctccaaaaatcaaagtctaaacgcccgcgcaatag 52991655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 11387285 - 11387389
Alignment:
Q  89 caaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttg 188  Q
    |||||| |||||| ||||||||| | |||||||| |||||||||||||| || ||||| |||  |||||||| ||||  || |||||||| |||| ||||    
T  11387285 caaaccattaaaacacctctccaga-taaccatcaaacctaccaaaaacccacgtaaccgcaccttaaacaaaccacaccagctaacatccgtgtatttg 11387383  T
Q  189 aaaacc 194  Q
    ||||||    
T  11387384 aaaacc 11387389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 32978958 - 32979148
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||  || |||||||||||||| |||||  |||||||||||||||||||||||||    
T  32978958 aaaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatgacataaacaaatcttgtgccaaactgttaaaaaacctctccaaaataacca 32979057  T
Q  121 tcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    || |||| ||||||||| |||||||| |||  |||||||||||||  ||||||| ||| |  | ||||||||| ||||||||| |||||||    
T  32979058 tcaaacccaccaaaaacccatgtaaccgcaccttaaacaagccacaccatctaatatccgcctatttgaaaactccatcaacaacaaactc 32979148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 21590942 - 21590751
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacc 119  Q
    |||| |||||||||||||||||||| |||| ||||||||| || ||||||||| |||||||||||||| |||||| |  ||||| |||||||||||||||    
T  21590942 caaatcaagaagtcatctccaaaaaacaaattctaaacgtttgtgcaatagcagaaacaaatcttgtgccaaaccgtagaaaaatctctccaaaataacc 21590843  T
Q  120 atcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    | | |||||||||||||  ||| |||| |||  ||||||||| |||| | | |||||||  ||| ||||||||| |||||| || |||||||    
T  21590842 aacaaacctaccaaaaatccatctaaccgcaccttaaacaagtcacgccgtttaacatccatgtatttgaaaactccatcatcaacaaactc 21590751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 34293849 - 34293730
Alignment:
Q  89 caaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttg 188  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||  |||||||| |||  |||||||| |||| ||| ||||||||  ||| ||||    
T  34293849 caaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaatccatgtaaccgcaccttaaacaaaccacatcagctaacatccatgtatttg 34293750  T
Q  189 aaaaccccatcaacaccaaa 208  Q
    |||||| |||||||| ||||    
T  34293749 aaaacctcatcaacaacaaa 34293730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 24717746 - 24717860
Alignment:
Q  22 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 121  Q
    |||||| |||||||||||||||||||||||||||||| ||| ||||||| | |||||| ||||||| |||||  ||  ||||||  ||||||||||||||    
T  24717746 aaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagtagaaacaagtcttgtgccaaacagttgcaaaacccatccaaaataaccat 24717845  T
Q  122 cgaacctaccaaaaa 136  Q
    | | |||||||||||    
T  24717846 caatcctaccaaaaa 24717860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 36582649 - 36582768
Alignment:
Q  89 caaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttg 188  Q
    |||||| ||||||||| | ||||||||||||||| |||||||||||||| |||||||| ||| ||||||||| ||||  ||  ||| ||| |||| ||||    
T  36582649 caaaccgttaaaaaacatttccaaaataaccatcaaacctaccaaaaacccatgtaaccgcactttaaacaaaccacaccagttaagatccgtgtatttg 36582748  T
Q  189 aaaaccccatcaacaccaaa 208  Q
    |||||| |||||||| ||||    
T  36582749 aaaacctcatcaacaacaaa 36582768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 43048094 - 43047987
Alignment:
Q  29 aagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatcgaacct 128  Q
    |||||||||||||||||||||||||||| |   | ||||||||| ||||||||||||||| ||||| ||  |||| |  ||||||||||||||| |||||    
T  43048094 aagtcatctccaaaaaccaaagtctaaatgcacgagcaatagcataaacaaatcttgtgtaaaaccgttgcaaaatccatccaaaataaccatcaaacct 43047995  T
Q  129 accaaaaa 136  Q
    ||||||||    
T  43047994 accaaaaa 43047987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 10365596 - 10365700
Alignment:
Q  89 caaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttg 188  Q
    |||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||| |||  |||||||  ||||  || |||||||| |||||||||    
T  10365596 caaaccgttaaaaaacctctccaaa-taaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacagaccacaccagctaacatccgtgtgtttg 10365694  T
Q  189 aaaacc 194  Q
    ||||||    
T  10365695 aaaacc 10365700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 26711885 - 26711990
Alignment:
Q  42 aaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatctt-gtgtcaaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactca 140  Q
    |||||||| || ||||| | | ||||||||  ||||||||||| ||| |||||| || ||||| | ||| |||||||||||| |||||||||||||| ||    
T  26711885 aaaccaaaatcgaaacggccgtgcaatagcggaaacaaatcttagtgccaaaccgttgaaaaatccctctaaaataaccatcaaacctaccaaaaaccca 26711984  T
Q  141 tgtaac 146  Q
    ||||||    
T  26711985 tgtaac 26711990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 10181800 - 10181992
Alignment:
Q  19 tcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataac 118  Q
    ||||||||||||||||||||||||||  |||| | ||||| ||| | ||||||| ||||||||| |||| |||||| ||||||||||||||||||||| |    
T  10181800 tcaaaccaagaagtcatctccaaaaattaaagaccaaacgactgggaaatagcataaacaaatcatgtgccaaaccgttaaaaaacctctccaaaatagc 10181899  T
Q  119 catcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    |||| |||||||||||||  |||||||| |||  ||||||||| |||  ||| ||||||| |||| ||||||||||||||||||| |||||||    
T  10181900 catcaaacctaccaaaaatccatgtaaccgcaccttaaacaagtcacaccatataacatccgtgtatttgaaaaccccatcaacaacaaactc 10181992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 15050443 - 15050255
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacc 119  Q
    ||||||||||| ||||||  ||||| ||||||||||||| || |||||||||| ||||||||||||||||| ||| || ||||||||||||  |||||||    
T  15050443 caaaccaagaaatcatctaaaaaaatcaaagtctaaacgcctacgcaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctcc--aataacc 15050346  T
Q  120 atcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    ||| ||||||||||||||||||||||| |||  |||||||||| ||  | |||||||||  ||| |||||||| ||| |||||| |||||||    
T  15050345 atcaaacctaccaaaaactcatgtaaccgcaccttaaacaagcaacaccgtctaacatc-atgtatttgaaaatcccctcaacaacaaactc 15050255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 39580456 - 39580355
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || ||||| || |||||||||||||    
T  39580456 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcacaatagcataaacaaatcttgtgtcaaaccgttgaaaaatctatccaaaataacca 39580357  T
Q  121 tc 122  Q
    ||    
T  39580356 tc 39580355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 3763400 - 3763285
Alignment:
Q  22 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 121  Q
    |||||| |||||||||||||||| |||||| |||||  ||| ||||||||| |||||| ||||||| |||||| ||  |||||   |||||||||| |||    
T  3763400 aaccaaaaagtcatctccaaaaatcaaagtttaaacacctgagcaatagcagaaacaagtcttgtgccaaaccattgcaaaactcatccaaaataatcat 3763301  T
Q  122 cgaacctaccaaaaac 137  Q
    | | ||||||||||||    
T  3763300 caatcctaccaaaaac 3763285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 5515020 - 5515135
Alignment:
Q  22 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 121  Q
    |||||| ||||||||||||||||||||| |||||| | ||| ||||||| | |||||| ||||||| |||||  ||  |||| |  ||||||||||||||    
T  5515020 aaccaaaaagtcatctccaaaaaccaaattctaaatgcctgagcaatagtagaaacaagtcttgtgccaaactgttgcaaaatccatccaaaataaccat 5515119  T
Q  122 cgaacctaccaaaaac 137  Q
    | | ||||||||||||    
T  5515120 caatcctaccaaaaac 5515135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 38499049 - 38499146
Alignment:
Q  96 ttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaacc 194  Q
    |||||||||||||| ||| |||||||  ||| |||||||||| ||||||||||||  |||||||| ||||  ||  ||||||| |||| ||||||||||    
T  38499049 ttaaaaaacctctctaaa-taaccattaaacataccaaaaacccatgtaactgcaccttaaacaaaccacaccagttaacatccgtgtatttgaaaacc 38499146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 24867494 - 24867348
Alignment:
Q  19 tcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataac 118  Q
    |||||| |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||| || || |||| |||||||||||||||    
T  24867494 tcaaacaaagaagtcatctccaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgccaatccgttgaaaatcctctccaaaataac 24867395  T
Q  119 catcgaacctaccaaaaactcatgtaactgcagtttaaacaagccac 165  Q
    |||| ||| ||  |||||| |||||||| |||  |||||||||||||    
T  24867394 catcaaacatattaaaaacccatgtaaccgcaccttaaacaagccac 24867348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 26331815 - 26331679
Alignment:
Q  29 aagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatcgaacct 128  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||   ||| | || |||||| |||| ||||||| |||| |||||    
T  26331815 aagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaaatcgttgaaaaacatctctaaaataatcatcaaacct 26331716  T
Q  129 accaaaaactcatgtaactgcagtttaaacaagccac 165  Q
    |||||||||||||||||| |||  |||||||||||||    
T  26331715 accaaaaactcatgtaaccgcaccttaaacaagccac 26331679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 12155982 - 12156096
Alignment:
Q  25 caagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatcga 124  Q
    ||||||||||||||||||||| |||||||||||  | ||||||||||| ||||||||||||||||||||| ||  |||||| |||||||||||||||| |    
T  12155982 caagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgtcaaaccattgcaaaacccctccaaaataaccatcaa 12156081  T
Q  125 acctaccaaaaactc 139  Q
    |||||||||||||||    
T  12156082 acctaccaaaaactc 12156096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 26331488 - 26331338
Alignment:
Q  15 gacatcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaa 114  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||   ||| | || |||||| |||| ||||    
T  26331488 gacaccaaaccaataagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaaatcgttgaaaaacatctctaaaa 26331389  T
Q  115 taaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccac 165  Q
    ||| |||| |||||||||||||  ||||||||  ||  |||||||||||||    
T  26331388 taatcatcaaacctaccaaaaatccatgtaacctcaccttaaacaagccac 26331338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 40600293 - 40600165
Alignment:
Q  22 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 121  Q
    |||||| |||||||||||||||| |||||| | |||| ||  |||||||||||||||| ||||||| |||||| ||  ||||||  ||||||||||||||    
T  40600293 aaccaaaaagtcatctccaaaaatcaaagtatgaacgcctaagcaatagcaaaaacaagtcttgtgccaaaccgttgcaaaacccgtccaaaataaccat 40600194  T
Q  122 cgaacctaccaaaaactcatgtaactgca 150  Q
    | |||||||||||||||| | ||||||||    
T  40600193 caaacctaccaaaaactcgtataactgca 40600165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 42269214 - 42269097
Alignment:
Q  22 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 121  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||| | |||||| ||||||| |||||  ||  ||||||  ||||||||||||||    
T  42269214 aaccaaaaagtcatctccaaaaaccaaattctaaacgcctgagcaatagtagaaacaagtcttgtgccaaactgttgcaaaacccatccaaaataaccat 42269115  T
Q  122 cgaacctaccaaaaactc 139  Q
    | | ||||||||||||||    
T  42269114 caatcctaccaaaaactc 42269097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 11470580 - 11470695
Alignment:
Q  32 tcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaa-aaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatcgaacctac 130  Q
    ||||||| |||||||||| |||||||  | || ||||| ||| |||||||||||||| |||||| ||  |||||| || ||||||| | ||| |||||||    
T  11470580 tcatctcaaaaaaccaaaatctaaactcccgcacaatatcaagaaacaaatcttgtgccaaaccgttgcaaaaccccttcaaaatagctatcaaacctac 11470679  T
Q  131 caaaaactcatgtaac 146  Q
    ||||||||| ||||||    
T  11470680 caaaaactcgtgtaac 11470695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 40680708 - 40680748
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtct 61  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  40680708 caaaccaaga-gtcatcaccaaaaaccaaagtctaaacgtct 40680748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 10670424 - 10670283
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacc 119  Q
    ||||| |||||||||| ||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||     
T  10670424 caaacaaagaagtcatatccaaaatccaaagtctaaatgcctgcgcaatagcagaaacaaatcttgtgtcaaaccgttgaaaaacctctccaaaataact 10670325  T
Q  120 atcgaacctaccaaaaactcatgtaactgcagtttaaacaag 161  Q
    ||| || |||| |||||  |||||||| |||  |||||||||    
T  10670324 atcaaatctactaaaaatccatgtaaccgcaccttaaacaag 10670283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 30845121 - 30845236
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    ||||||| ||||||||| |||||||||||||||||||  |  |||||||||| ||||||||||||||||||||| ||  |||||| ||||||||||||||    
T  30845121 aaaccaaaaagtcatcttcaaaaaccaaagtctaaacacccacgcaatagcagaaacaaatcttgtgtcaaaccgttgcaaaacccctccaaaataacca 30845220  T
Q  121 tcgaacctaccaaaaa 136  Q
    || |||||||||||||    
T  30845221 tcaaacctaccaaaaa 30845236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 24350612 - 24350488
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    ||||||||||||||||||||||||| |||||||||||  | ||||||||||| |||||||| |||||  ||||| ||  |||||| ||||||||||||||    
T  24350612 aaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaacaaattttgtgctaaaccgttgcaaaacccctccaaaataacca 24350513  T
Q  121 tcgaacctaccaaaaactcatgtaa 145  Q
    || ||| |||||||||||| |||||    
T  24350512 tcaaacttaccaaaaactcgtgtaa 24350488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 10772594 - 10772722
Alignment:
Q  22 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 121  Q
    |||||| |||||||||||||||| |||||||||||||  || ||||| ||| |||||| ||||||| |||||| ||  ||||||  ||||||||||||||    
T  10772594 aaccaaaaagtcatctccaaaaatcaaagtctaaacgcttgagcaatggcagaaacaagtcttgtgccaaaccgttgcaaaacccatccaaaataaccat 10772693  T
Q  122 cgaacctaccaaaaactcatgtaactgca 150  Q
    | |||||||||||||| | ||||||||||    
T  10772694 caaacctaccaaaaacccgtgtaactgca 10772722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 9566641 - 9566760
Alignment:
Q  89 caaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttg 188  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||  |||||||| | ||  || ||||||||  ||| ||||    
T  9566641 caaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaactacaccagctaacatccatgtatttg 9566740  T
Q  189 aaaaccccatcaacaccaaa 208  Q
    |||||| |||||||| ||||    
T  9566741 aaaacctcatcaacaacaaa 9566760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 11366564 - 11366667
Alignment:
Q  89 caaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttg 188  Q
    |||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||  ||||| || ||||  || |||||||| |||| ||||    
T  11366564 caaaccgttaaaaaacctctccaaa-taaccatcaaacctaccaaaaactcatgtaaccgcacattaaa-aaaccacaccagctaacatccgtgtatttg 11366661  T
Q  189 aaaacc 194  Q
    ||||||    
T  11366662 aaaacc 11366667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 24842886 - 24843010
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    ||||||| |||||| ||||||||||||| || |||||  | | ||| ||||||||||||||||||||  ||||  ||   ||||| |||||||| |||||    
T  24842886 aaaccaaaaagtcagctccaaaaaccaacgtttaaacacccgagcagtagcaaaaacaaatcttgtgctaaactgttgttaaacc-ctccaaaagaacca 24842984  T
Q  121 tcgaacctaccaaaaactcatgtaac 146  Q
    || |||||||||||||| | ||||||    
T  24842985 tcaaacctaccaaaaacccgtgtaac 24843010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 31026688 - 31026650
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacg 58  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  31026688 caaaccaataagtcgtctccaaaaaccaaagtctaaacg 31026650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 42678010 - 42677816
Alignment:
Q  16 acatcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaat 115  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||| ||||| || ||| |||||||||  |||||  || |||||||||| ||||||    
T  42678010 acatcaaaccaagaagtcatctctcaaaaccaaagtctaaacgcctgcacaataacataaaaaaatcttgtaccaaactgttgaaaaacctcttcaaaat 42677911  T
Q  116 aaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    ||||||  ||||||||| ||||||||||||| |||  ||||||||| |||    |||||||||  |||  ||||||||| |||||||| |||||||    
T  42677910 aaccatgaaacctaccacaaactcatgtaaccgcaccttaaacaagtcacagtgtctaacatccatgt-attgaaaacctcatcaacaacaaactc 42677816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 45872857 - 45873052
Alignment:
Q  15 gacatcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaa 114  Q
    |||| |||||| | ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||   ||||| ||  ||||| |||||||||    
T  45872857 gacaccaaacccataagtcatctccaaaaaccaaagtctaaacgcatgcgcaatagcagaaacaaatcttgtacgaaaccgttgcaaaacgtctccaaaa 45872956  T
Q  115 taaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    |||||| | |||||||||||||| || ||||| |||  ||||||||| ||   | |||||||||  ||| | |||||||||| |||||| |||||||    
T  45872957 taaccaccaaacctaccaaaaacccacgtaaccgcaccttaaacaagtcataccgtctaacatccatgtatctgaaaacccc-tcaacaacaaactc 45873052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 52635383 - 52635506
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacca 120  Q
    |||| |||||||||| ||||||||| ||||||||||| || || |||||||| |||||||||||||| |||| | ||  |||| | ||||||||||||||    
T  52635383 aaactaagaagtcatttccaaaaactaaagtctaaacatccgctcaatagcagaaacaaatcttgtgccaaatcgttgcaaaatc-ctccaaaataacca 52635481  T
Q  121 tcgaacctaccaaaaactcatgtaa 145  Q
    || |||||||||||||||| |||||    
T  52635482 tcaaacctaccaaaaactcgtgtaa 52635506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 55728388 - 55728446
Alignment:
Q  21 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaa 79  Q
    ||||||||||||||||||||||||| |||||||||||  | ||||||||||| ||||||    
T  55728388 aaaccaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaa 55728446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 12130396 - 12130454
Alignment:
Q  153 ttaaacaagccacgtcatctaacatctgtgtgtttgaaaaccccatcaacaccaaactc 211  Q
    |||||||||||||||| |||||||||  ||| |||||||||| |||||||| |||||||    
T  12130396 ttaaacaagccacgtcgtctaacatccatgtatttgaaaacctcatcaacaacaaactc 12130454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 12130355 - 12130392
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaac 57  Q
    |||||||| |||||||||||||||||||||||||||||    
T  12130355 caaaccaataagtcatctccaaaaaccaaagtctaaac 12130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 14440940 - 14440978
Alignment:
Q  20 caaaccaagaagtcatctccaaaaaccaaagtctaaacg 58  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  14440940 caaaccaagaagtcatcttcaaaaaccaaagtctgaacg 14440978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 2816 - 2692
Alignment:
Q  22 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagcaaaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 121  Q
    |||||| || |||||||||||| |||||||||||||| ||| ||||||||| |||||| ||||||| |||||| ||  ||| ||  || ||||||| |||    
T  2816 aaccaaaaattcatctccaaaacccaaagtctaaacgcctgagcaatagcagaaacaagtcttgtgccaaaccgttgcaaatcccatctaaaataatcat 2717  T
Q  122 cgaacctaccaaaaactcatgtaac 146  Q
    | | |||||||||||||||||||||    
T  2716 caatcctaccaaaaactcatgtaac 2692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 269761 - 269865
Alignment:
Q  89 caaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaactgcagtttaaacaagccacgtcatctaacatctgtgtgtttg 188  Q
    |||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||| |||  |||||||| ||||   | |||||||| |||| ||||    
T  269761 caaaccgttaaaaaacctctccaaa-taaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaaccacactagctaacatccgtgtatttg 269859  T
Q  189 aaaacc 194  Q
    ||||||    
T  269860 aaaacc 269865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 2886 - 2958
Alignment:
Q  23 accaagaagtcatctccaaaaaccaaagtctaa--acgtctgcgcaatagcaaaaacaaatcttgtgtcaaac 93  Q
    ||||| || ||||||||||||||||||||||||  ||| | | ||||||||| |||||||||||||| |||||    
T  2886 accaaaaattcatctccaaaaaccaaagtctaaacacgcccgtgcaatagcagaaacaaatcttgtgccaaac 2958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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