View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_14 (Length: 384)

Name: NF9782A_low_14
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_14
NF9782A_low_14
[»] chr7 (13 HSPs)
chr7 (3-384)||(45942840-45943221)
chr7 (5-326)||(13440044-13440365)
chr7 (3-257)||(45235939-45236193)
chr7 (8-112)||(15653747-15653851)
chr7 (11-123)||(3104901-3105013)
chr7 (20-112)||(46623711-46623803)
chr7 (8-112)||(12378767-12378871)
chr7 (37-117)||(43105334-43105414)
chr7 (165-298)||(12378584-12378714)
chr7 (198-313)||(15653546-15653661)
chr7 (193-280)||(27941368-27941455)
chr7 (173-315)||(43105470-43105612)
chr7 (203-271)||(17855925-17855993)
[»] chr6 (9 HSPs)
chr6 (3-326)||(25317843-25318166)
chr6 (3-326)||(26205337-26205660)
chr6 (3-321)||(15673814-15674132)
chr6 (11-326)||(23347295-23347609)
chr6 (3-221)||(8872759-8872977)
chr6 (9-112)||(1683035-1683138)
chr6 (9-112)||(33630092-33630195)
chr6 (203-314)||(4474887-4474998)
chr6 (203-271)||(33804970-33805038)
[»] chr2 (14 HSPs)
chr2 (4-326)||(13550114-13550436)
chr2 (3-326)||(43627488-43627811)
chr2 (8-298)||(22052621-22052911)
chr2 (5-326)||(33547863-33548184)
chr2 (5-326)||(31085465-31085786)
chr2 (11-176)||(9949242-9949407)
chr2 (20-116)||(45421525-45421621)
chr2 (245-316)||(26894450-26894521)
chr2 (245-316)||(26899889-26899960)
chr2 (192-266)||(31774862-31774936)
chr2 (17-122)||(26179959-26180064)
chr2 (215-273)||(16673286-16673344)
chr2 (200-313)||(45421705-45421818)
chr2 (160-212)||(26179860-26179912)
[»] chr3 (12 HSPs)
chr3 (3-326)||(2813328-2813651)
chr3 (3-326)||(6176306-6176629)
chr3 (3-316)||(23601762-23602075)
chr3 (3-326)||(29309397-29309720)
chr3 (4-305)||(25872957-25873260)
chr3 (11-190)||(14904130-14904309)
chr3 (5-326)||(9379088-9379409)
chr3 (3-92)||(7147030-7147119)
chr3 (9-111)||(49731975-49732077)
chr3 (20-116)||(30167383-30167479)
chr3 (198-315)||(49731771-49731888)
chr3 (198-313)||(30167185-30167301)
[»] chr1 (12 HSPs)
chr1 (3-326)||(32353125-32353448)
chr1 (5-326)||(48073259-48073580)
chr1 (11-326)||(37530563-37530878)
chr1 (2-211)||(3692615-3692824)
chr1 (3-120)||(14119759-14119877)
chr1 (3-112)||(36305773-36305882)
chr1 (9-315)||(48265557-48265863)
chr1 (20-112)||(21528167-21528259)
chr1 (192-320)||(30970442-30970570)
chr1 (7-112)||(36929160-36929265)
chr1 (245-313)||(36306015-36306083)
chr1 (196-272)||(7396593-7396669)
[»] chr4 (14 HSPs)
chr4 (3-326)||(2631387-2631710)
chr4 (17-326)||(20675025-20675334)
chr4 (5-326)||(55298611-55298932)
chr4 (3-326)||(8486809-8487132)
chr4 (5-326)||(23873304-23873625)
chr4 (20-116)||(7663277-7663373)
chr4 (9-112)||(3130021-3130124)
chr4 (198-315)||(8654912-8655029)
chr4 (213-315)||(47541124-47541226)
chr4 (198-313)||(7663080-7663195)
chr4 (20-111)||(8655116-8655207)
chr4 (192-280)||(29553614-29553702)
chr4 (9-112)||(47540920-47541023)
chr4 (198-314)||(3129822-3129935)
[»] chr8 (7 HSPs)
chr8 (2-326)||(16420838-16421162)
chr8 (3-271)||(2872179-2872447)
chr8 (3-128)||(35405694-35405819)
chr8 (9-112)||(19384752-19384855)
chr8 (7-313)||(7452345-7452651)
chr8 (198-292)||(19384572-19384666)
chr8 (150-230)||(6901031-6901111)
[»] chr5 (10 HSPs)
chr5 (3-216)||(32918307-32918520)
chr5 (11-326)||(34480953-34481259)
chr5 (3-201)||(6264151-6264349)
chr5 (8-93)||(15499707-15499792)
chr5 (201-321)||(587703-587823)
chr5 (20-315)||(10486759-10487054)
chr5 (192-257)||(31862771-31862836)
chr5 (192-271)||(30509928-30510007)
chr5 (192-271)||(30550268-30550347)
chr5 (39-97)||(11817815-11817873)
[»] scaffold0418 (2 HSPs)
scaffold0418 (20-116)||(7681-7777)
scaffold0418 (198-313)||(7859-7974)
[»] scaffold0029 (1 HSPs)
scaffold0029 (239-315)||(134693-134769)
[»] scaffold0002 (2 HSPs)
scaffold0002 (239-315)||(312520-312596)
scaffold0002 (239-315)||(327974-328050)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 384
Target Start/End: Original strand, 45942840 - 45943221
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45942840 ggcgacaacacccgtttagcaatcaaattagtccttgttggtaaacgatctcagatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 45942939  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45942940 gccacaccaaattcagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaaccaccagatgggtccggaag 45943039  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||| | |||||||||||| |||| |    
T  45943040 ccacacccagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataatctacat 45943139  T
Q  303 ctctacctccacacatccctccacactatcagacttaatcatatgattataatcttttatttattcacacattcataattga 384  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45943140 ctccacctccacacatccctccacactatcggacttaatcatatgattataatcttttatttattcacacattcataattga 45943221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 13440044 - 13440365
Alignment:
Q  5 cgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgc 104  Q
    |||||||||| ||| |||||||||||| ||| |||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  13440044 cgacaacacccgtcgagcaatcaaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgc 13440143  T
Q  105 cacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagcc 204  Q
    ||||||||||||||| ||| | | |||||| |||| ||||||||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  13440144 cacaccaaatccagatcatcgacggcgaccggaggtacctgagagattaacaaactatatgcacctcgaactgtgtaaccaccagatgggtccggaagcc 13440243  T
Q  205 acacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtct 304  Q
    |||||||||||||||||||| |||||||||| ||||||| |||||||||||||  | |||| |||| ||||||||| | ||||| |||||| ||||||||    
T  13440244 acacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagcccaacactcatctagcaactcctcctcccactaccataaactacgtct 13440343  T
Q  305 ctacctccacacatccctccac 326  Q
    | |||||||||| |||| ||||    
T  13440344 ccacctccacacctccccccac 13440365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 45235939 - 45236193
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    ||||||| |||| |||| |||||||||||  || |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45235939 ggcgacatcacccgtcttgcaatcaaatttatctttgttggtaaacgatcacggatgagcctccacgcgaaaacggaaaccttcaagggaacctgtttgt 45236038  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    | ||||||||||||| |||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||| ||||||  ||||||| | || || |||    
T  45236039 gtcacaccaaatccaaagcatagtctacgacatgaggtacctgagaggttaacaaactatatgcaccacgaattgtgtacccaccagacgagttcgaaag 45236138  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagcc 257  Q
    ||||||||| |||||||||||| |||||||||| ||||||| |||||||||||||    
T  45236139 ccacacccaactatctgaaacaataggattcaaggaaacatcaagaagtaaagcc 45236193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 15653851 - 15653747
Alignment:
Q  8 caacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccac 107  Q
    ||||||| ||| ||||||||| |||||| |||||||||||||||| |||| ||| |||||||| ||||| || |||||||||||||||||||||||||||    
T  15653851 caacacccgtcgagcaatcaagttagtctttgttggtaaacgatcccggaggagtctccacgcaaaaactgataccttcaagggaacctgtttgtgccac 15653752  T
Q  108 accaa 112  Q
    |||||    
T  15653751 accaa 15653747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 3104901 - 3105013
Alignment:
Q  11 caccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacacc 110  Q
    |||| ||||||| |||||||| ||| |||||||||||||||| ||||||||| ||||| | ||||| || |||||||||| |||||| ||||||||||||    
T  3104901 cacccgtctagctatcaaatttgtctttgttggtaaacgatcacggatgagcatccacacaaaaactgaaaccttcaaggaaacctgattgtgccacacc 3105000  T
Q  111 aaatccagagcat 123  Q
    ||||||| |||||    
T  3105001 aaatccaaagcat 3105013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 46623711 - 46623803
Alignment:
Q  20 agcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaa 112  Q
    ||||||||| ||| || | |||||||||||||| |||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  46623711 agcaatcaagttattcttcgttggtaaacgatcccggatgagtctccacgcaaaaactgataccttcaagggaacctgtttgtgccacaccaa 46623803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 12378871 - 12378767
Alignment:
Q  8 caacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccac 107  Q
    ||||||| |||||||||||| |||  || |||||||||| ||||| |||||||| |||||| | ||||| || ||||||||||||||||| |||||||||    
T  12378871 caacacctgtctagcaatcagatttatctttgttggtaaccgatcacggatgagtctccacacaaaaactgataccttcaagggaacctggttgtgccac 12378772  T
Q  108 accaa 112  Q
    |||||    
T  12378771 accaa 12378767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 43105334 - 43105414
Alignment:
Q  37 ttgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcca 117  Q
    |||||||||| |||||   ||||||||||||||| ||||| |||||||||| ||||||||  | |||||||||||||||||    
T  43105334 ttgttggtaaccgatcgttgatgagcctccacgcaaaaactgacaccttcaggggaacctaatggtgccacaccaaatcca 43105414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 298
Target Start/End: Complemental strand, 12378714 - 12378584
Alignment:
Q  165 gcaccacgaactgtgtaatcaccagatgggtccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatact 264  Q
    |||||||||||||||||  |||  || || ||||| ||||| |||||||||||| |||||||||||| ||  ||||||| |||||||   ||| || |||    
T  12378714 gcaccacgaactgtgtagccacatgacggatccgggagccaaacccagctatctaaaacattaggatacagggaaacatcaagaagt---gccctacact 12378618  T
Q  265 cctctaacaactcctcattccactgccataacct 298  Q
    || |||||| |||||| | ||||||||| |||||    
T  12378617 ccgctaacatctcctcctcccactgccacaacct 12378584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 15653661 - 15653546
Alignment:
Q  198 ggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacc 297  Q
    |||||||| ||||| |||||||||||||| |||  |||   ||||| ||||||||||||| || ||||| |||||| |||||| | ||||||||| || |    
T  15653661 ggaagccaaacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacatctcctcctcccactgccacaatc 15653562  T
Q  298 tacgtctctacctcca 313  Q
    |||| ||| |||||||    
T  15653561 tacgcctccacctcca 15653546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 27941455 - 27941368
Alignment:
Q  193 ggtccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctc 280  Q
    |||| ||||||||||||||   |||||||| ||||  |||||||||||||| ||  ||||||| | || |||||||||||||||||||    
T  27941455 ggtcaggaagccacacccaaagatctgaaatattaacattcaaagaaacatcaaacagtaaagtcttacactcctctaacaactcctc 27941368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 315
Target Start/End: Original strand, 43105470 - 43105612
Alignment:
Q  173 aactgtgtaatcaccagatgggtccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaac 272  Q
    |||||||||| |||| || || | || |||||| ||||| |||||||||||||| |||  ||| ||||||| ||  ||||| ||| || ||||  |||||    
T  43105470 aactgtgtaaccacctgacggattcgcaagccaaacccatctatctgaaacattcggaaacaaggaaacattaaagagtaacgccctacactctgctaac 43105569  T
Q  273 aactcctcattccactgccataacctacgtctctacctccaca 315  Q
    | |||||| | ||| ||||| ||||| || ||| |||||||||    
T  43105570 atctcctcctcccattgccacaacctgcgcctccacctccaca 43105612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 17855925 - 17855993
Alignment:
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaa 271  Q
    ||||||||| |||||||||||||||||   |||||||| || ||| ||||||||| ||  |||||||||    
T  17855925 ccacacccatctatctgaaacattaggcaacaaagaaatatcaagcagtaaagccttaagctcctctaa 17855993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 25317843 - 25318166
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25317843 ggcgacaacacccgtctagcaatcaaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaacggacaccttcaagggaacctgtttgt 25317942  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  25317943 gccacaccaaatccaaagcatagtccgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaacagtgtaaccaccagatgggtccggaag 25318042  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||| | |||||||||||||||||||    
T  25318043 ccacacctagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacgt 25318142  T
Q  303 ctctacctccacacatccctccac 326  Q
     || ||||||||| ||||| ||||    
T  25318143 atccacctccacaaatccccccac 25318166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 26205337 - 26205660
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26205337 ggcgacaacacccgtctagcaatcaaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaacggacaccttcaagggaacctgtttgt 26205436  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  26205437 gccacaccaaatccaaagcatagtccgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaacagtgtaaccaccagatgggtccggaag 26205536  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||| | |||||||||||||||||||    
T  26205537 ccacacctagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacgt 26205636  T
Q  303 ctctacctccacacatccctccac 326  Q
     || ||||||||| ||||| ||||    
T  26205637 atccacctccacaaatccccccac 26205660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 15673814 - 15674132
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    ||||||||||||  ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  15673814 ggcgacaacacccttctagcaatcaaatttgtccttgttggtaaacgatcccggatgagcctccacgcaaaaacggaccccttcaagggaacctgcttgt 15673913  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  15673914 gccacaccaaatccagagcatagtcgacgacctgaggtacctgagagattaacaaactatatgcacctcgaactgtgtaaccaccagatgggtccggaag 15674013  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |  |||| |||| ||||||||| | ||||||||| |||||||||    
T  15674014 ccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctgcactcatctagcaactcctcctcccactgccacaacctacgt 15674113  T
Q  303 ctctacctccacacatccc 321  Q
    ||| |||||||||| ||||    
T  15674114 ctccacctccacacctccc 15674132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 23347609 - 23347295
Alignment:
Q  11 caccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacacc 110  Q
    |||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||    
T  23347609 cacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacgaaaaccttcaagggaacctgtttgtgccacacc 23347510  T
Q  111 aaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagccacaccc 210  Q
    ||||||| ||||||||| ||||||||||| |||| |||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  23347509 aaatccatagcatagtcggcgacctgaggtacct-agagattaacaaactatatgcacctcgaactgtgtatccaccagatgggtccggaagccacaccc 23347411  T
Q  211 agctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacct 310  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| |||| ||||||||| | |||||||||||||||||||||| ||||    
T  23347410 agctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacct 23347311  T
Q  311 ccacacatccctccac 326  Q
    |||||| |||| ||||    
T  23347310 ccacacctccccccac 23347295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 8872977 - 8872759
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||| ||||||||| ||| |||| ||||||||||| |  ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  8872977 ggcgacaacacccgtctagaaatcaaatttgtccttgtcggtaaacgatcacaaatgagcctccacgcgaaaacggaaaccttcaagggaaccagtttgt 8872878  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||| |||||  ||||||||||  ||||| |||||||||||||    
T  8872877 gccacaccaaatccagagcatagtctacgacctgaggtacctgagagattaacaaactataagcaccttgaactgtgtatccaccatatgggtccggaag 8872778  T
Q  203 ccacacccagctatctgaa 221  Q
    |||||||||||||||||||    
T  8872777 ccacacccagctatctgaa 8872759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 1683035 - 1683138
Alignment:
Q  9 aacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccaca 108  Q
    |||||| ||| |||||||||||||||| |||| |||||||||||  ||| ||| ||||| || ||||| || | |||||||||||||||||||| |||||    
T  1683035 aacacccgtcgagcaatcaaattagtctttgtcggtaaacgatcaaggaggagtctccaagcaaaaactgaaatcttcaagggaacctgtttgtaccaca 1683134  T
Q  109 ccaa 112  Q
    ||||    
T  1683135 ccaa 1683138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 33630092 - 33630195
Alignment:
Q  9 aacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccaca 108  Q
    |||||| ||| |||||||||||||||| |||| |||||||||||||||| ||  ||| | || ||||| || | |||||||||||| |||||||||||||    
T  33630092 aacacccgtcgagcaatcaaattagtctttgtcggtaaacgatctcggaggaatctctaagcaaaaactgaaatcttcaagggaacatgtttgtgccaca 33630191  T
Q  109 ccaa 112  Q
    ||||    
T  33630192 ccaa 33630195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 4474887 - 4474998
Alignment:
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||| || ||||||||||||||   ||||||||||| ||| | ||||| | || |||||||||| || | ||| | ||||  ||| |||||||||    
T  4474887 ccacacccatctgtctgaaacattaggcagcaaagaaacattaagcaataaagtcctaaactcctctaataaattctcctcccacgcccacaacctacgt 4474986  T
Q  303 ctctacctccac 314  Q
    ||| ||||||||    
T  4474987 ctccacctccac 4474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 33804970 - 33805038
Alignment:
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaa 271  Q
    ||||| ||| |||||||||||||||||   ||||||||||| ||| ||||||||| ||  |||||||||    
T  33804970 ccacaaccatctatctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaa 33805038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 13550114 - 13550436
Alignment:
Q  4 gcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtg 103  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  13550114 gcgacaacacccgtctagcaatcaaattagtccttgttggtaaacgatctcggatgagcctccacacgaaaacgaacaccttcaagggaacctgtttgtg 13550213  T
Q  104 ccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagc 203  Q
    |||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  13550214 ccacaccaaatccaaagcatagtccgctacctgaggaacctgagaagtcaacaaactatatgcaccatgaacagtgtaaccaccagatgggtccggaagc 13550313  T
Q  204 cacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtc 303  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |  ||||||||| ||| ||||||| ||||||||||||||||||||    
T  13550314 cacacccagctatctgaaacattaggatccaaagaaacatcaagaattaaagccctgcactcctctagcaagtcctcatcccactgccataacctacgtc 13550413  T
Q  304 tctacctccacacatccctccac 326  Q
    || ||||||||||||||| ||||    
T  13550414 tccacctccacacatccccccac 13550436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 43627488 - 43627811
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  43627488 ggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaacctttaagggaacctgtttgt 43627587  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||||||||||| | ||||||| |||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  43627588 gccacaccaaatccaaatcatagtcggcgaccggaggaacctgagagattaacaaactatatgcacctcgaactgtgtatccaccagatgggtccggaag 43627687  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| |||| ||||||||| | |||||||||||||||||||    
T  43627688 ccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgt 43627787  T
Q  303 ctctacctccacacatccctccac 326  Q
    ||| |||||||||| |||| ||||    
T  43627788 ctccacctccacacctccccccac 43627811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 22052621 - 22052911
Alignment:
Q  8 caacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccac 107  Q
    |||||||  ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22052621 caacacccttctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccac 22052720  T
Q  108 accaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagccaca 207  Q
    ||||||||||| ||| ||||||| |||||||| ||| |||| |||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  22052721 accaaatccagggcaaagtctgcaacctgaggtaccagagaagtcaacaagctatatgcacctcgaactgtgtaaccaccagaggggtccggaagccaca 22052820  T
Q  208 cccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacct 298  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||| | |||||||||||||||    
T  22052821 cccagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacct 22052911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 33547863 - 33548184
Alignment:
Q  5 cgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgc 104  Q
    |||||||||| ||| |||||||||||| ||| |||||| ||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  33547863 cgacaacacccgtcgagcaatcaaatttgtccttgttgataaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgc 33547962  T
Q  105 cacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagcc 204  Q
    ||||||||||||||| ||| | | |||||| |||| ||||||||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  33547963 cacaccaaatccagatcatcgacggcgaccggaggtacctgagagattaacaaactatatgcacctcgaactgtgtaaccaccagatgggtccggaagcc 33548062  T
Q  205 acacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtct 304  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||||||||| || |||| |||| ||||||||| | |||||||||||||||||||||    
T  33548063 acacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtct 33548162  T
Q  305 ctacctccacacatccctccac 326  Q
    | |||||||||| |||| ||||    
T  33548163 ccacctccacacctccccccac 33548184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 5 - 326
Target Start/End: Complemental strand, 31085786 - 31085465
Alignment:
Q  5 cgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgc 104  Q
    ||||| |||| |||||||||||||||| ||| || ||||||||||||| ||||||||||||||||| |||||| |    |||||| ||||||||||||||    
T  31085786 cgacagcacccgtctagcaatcaaatttgtctttcttggtaaacgatcacggatgagcctccacgcaaaaacgaattatttcaagagaacctgtttgtgc 31085687  T
Q  105 cacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagcc 204  Q
    |||||||||||||||||||||||  |||| ||||| ||||||||||| |||||||||||||||||||||| ||||||  |||| || || |  |||||||    
T  31085686 cacaccaaatccagagcatagtcctcgacatgaggtacctgagaggttaacaaactatatgcaccacgaattgtgtagccacctgacggatttggaagcc 31085587  T
Q  205 acacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtct 304  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||  |||||| |||||| | |||||| || ||||| | |||    
T  31085586 acacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactctgctaacagctcctcctcccactgtcacaacctgcatct 31085487  T
Q  305 ctacctccacacatccctccac 326  Q
    | ||||||||||||||| ||||    
T  31085486 ccacctccacacatccccccac 31085465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 9949407 - 9949242
Alignment:
Q  11 caccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacacc 110  Q
    |||| |||||| |||||||||   | |||| |||||||| || || | |||||||||||| |||||||| |||||||| | |||||||||||||||||||    
T  9949407 cacccgtctagaaatcaaatttaaccttgtcggtaaacggtcacgaaggagcctccacgcaaaaacggaaaccttcaaagaaacctgtttgtgccacacc 9949308  T
Q  111 aaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaact 176  Q
    ||||||| | |||||||| || ||||||| |||||||||   ||||||||||||||||| ||||||    
T  9949307 aaatccaaaacatagtctacggcctgaggtacctgagagactaacaaactatatgcacctcgaact 9949242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 45421525 - 45421621
Alignment:
Q  20 agcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcc 116  Q
    ||||||||| |||||| | ||||||||||||||  ||||||| |||||| | ||||| || ||||||||||||||||||||||| ||||||||||||    
T  45421525 agcaatcaagttagtcttcgttggtaaacgatcctggatgagtctccacacaaaaactgataccttcaagggaacctgtttgtgtcacaccaaatcc 45421621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 26894521 - 26894450
Alignment:
Q  245 aagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacctccacac 316  Q
    ||||||||||||| || |||| |||| ||||||||| | |||||||||||||||||||||| ||||||||||    
T  26894521 aagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacac 26894450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 26899960 - 26899889
Alignment:
Q  245 aagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacctccacac 316  Q
    ||||||||||||| || |||| |||| ||||||||| | |||||||||||||||||||||| ||||||||||    
T  26899960 aagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacac 26899889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 31774862 - 31774936
Alignment:
Q  192 gggtccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcc 266  Q
    ||||| |||||||||||||| ||||||||||||||||||  ||||||||||| ||||||||| ||| || |||||    
T  31774862 gggtcgggaagccacacccatctatctgaaacattaggagacaaagaaacatcaagaagtaaggccttacactcc 31774936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 26180064 - 26179959
Alignment:
Q  17 tctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcc 116  Q
    ||||||||| |||||  || |||||||||| ||||| ||||||||| ||||||| ||||| || |||||||| ||||  || |||| |||||||||||||    
T  26180064 tctagcaattaaatttatctttgttggtaaccgatcacggatgagcatccacgcaaaaactgataccttcaacggaatatgattgtaccacaccaaatcc 26179965  T
Q  117 agagca 122  Q
    | ||||    
T  26179964 aaagca 26179959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 16673286 - 16673344
Alignment:
Q  215 atctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaaca 273  Q
    |||||||||||||  |||||||||||||| ||| ||||||| | || ||||||||||||    
T  16673286 atctgaaacattaatattcaaagaaacatgaagcagtaaagtcttacactcctctaaca 16673344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 313
Target Start/End: Original strand, 45421705 - 45421818
Alignment:
Q  200 aagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataaccta 299  Q
    |||||| |||||  ||||||||||||| |||  ||||  ||||| |||||| |||||| || ||||| |||||| |||||| | ||||||| | || |||    
T  45421705 aagccaaacccatgtatctgaaacattcggaaacaaaagaacatcaagaagaaaagccctacactccgctaacatctcctcctcccactgcgacaatcta 45421804  T
Q  300 cgtctctacctcca 313  Q
    || ||| |||||||    
T  45421805 cgcctccacctcca 45421818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 26179912 - 26179860
Alignment:
Q  160 tatatgcaccacgaactgtgtaatcaccagatgggtccggaagccacacccag 212  Q
    |||||||||||||||| |||||  |||| || || ||||||||||||||||||    
T  26179912 tatatgcaccacgaaccgtgtagccacctgaaggatccggaagccacacccag 26179860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 326
Target Start/End: Complemental strand, 2813651 - 2813328
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    ||||||| |||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  2813651 ggcgacagcacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaaccttcaagggaacctgtttgt 2813552  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||||||||||| ||||||||| ||||||||||| | | ||||| | ||||||||||||||||| |||||| ||||  |||||||||||||||||||    
T  2813551 gccacaccaaatccatagcatagtcggcgacctgaggtatccgagagattaacaaactatatgcacctcgaactatgtatccaccagatgggtccggaag 2813452  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| |||| ||||||||| | |||||||||||||||||||    
T  2813451 ccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgt 2813352  T
Q  303 ctctacctccacacatccctccac 326  Q
    ||| |||||||||| |||| ||||    
T  2813351 ctccacctccacacctccccccac 2813328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 326
Target Start/End: Complemental strand, 6176629 - 6176306
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| || ||||| || ||||||||||||||||||||||    
T  6176629 ggcgacaacacccgtctagcaatcaaattagtccttgttggtaaacgatcacggatgagcctccatgcaaaaacagaaaccttcaagggaacctgtttgt 6176530  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||| ||||||| ||||||||| ||||||||||| || |||||| | ||||||||||||||||| |||||||||||  |||||||||||||| ||||    
T  6176529 gccacacaaaatccatagcatagtcggcgacctgaggtacttgagagattaacaaactatatgcacctcgaactgtgtatccaccagatgggtccagaag 6176430  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || |||| |||| ||||||||| | ||||||| |||||||||||    
T  6176429 ccacacccagttatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgctataacctacgt 6176330  T
Q  303 ctctacctccacacatccctccac 326  Q
    ||| |||||||||| |||| ||||    
T  6176329 ctccacctccacacctccccccac 6176306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 316
Target Start/End: Original strand, 23601762 - 23602075
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||| || |||| |||||||||||||||||    
T  23601762 ggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacagaaacctccaagggaacctgtttgt 23601861  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||||||||||||| ||||||| ||||||  ||| ||||||||| | ||||||||||||||||| |||||||||||  ||| ||||||||||| |||    
T  23601862 gccacaccaaatccagatcatagtcggcgaccgaaggtacctgagagattaacaaactatatgcacctcgaactgtgtatccactagatgggtccgaaag 23601961  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| |||| ||||||||| | |||||||||||||||| ||    
T  23601962 ccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctatgt 23602061  T
Q  303 ctctacctccacac 316  Q
    ||| ||||||||||    
T  23602062 ctccacctccacac 23602075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 29309397 - 29309720
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    ||||||| |||| ||||||||||||| || ||| |||||||||||||||| |||| ||||| |||||  |||||||| ||||||||||||||||||||||    
T  29309397 ggcgacagcacccgtctagcaatcaagtttgtccttgttggtaaacgatcacggaggagccgccacgtaaaaacggaaaccttcaagggaacctgtttgt 29309496  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||  | ||||||||||||||||| |||||||||||  ||| |||||||||||||||    
T  29309497 gccacaccaaatccagagcatagtcggcgacctgaggcacctgagaaattaacaaactatatgcacctcgaactgtgtatccactagatgggtccggaag 29309596  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||| || |||| |||| ||||||||| | |||||||||||||||||||    
T  29309597 ccacacccaactatctgaaacattaggattcaatgaaacatcaagaagtaacgccctacactcatctagcaactcctcctcccactgccataacctacgt 29309696  T
Q  303 ctctacctccacacatccctccac 326  Q
    ||| |||||||||| |||| ||||    
T  29309697 ctccacctccacacctccccccac 29309720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 305
Target Start/End: Complemental strand, 25873260 - 25872957
Alignment:
Q  4 gcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtg 103  Q
    |||| |||||| |||||| |||||||||  || |||| |||||||| || || | |||||||||||| |||||||| |||||||||||||||||||||||    
T  25873260 gcgataacacccgtctagaaatcaaatttatccttgtcggtaaacggtcacgaaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtg 25873161  T
Q  104 ccacaccaaatccagagcatagtctgcgacc--tgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaa 201  Q
    |||||||||||||| |||||||||| || ||  ||||| |||||||||   ||||||||||||||||| |||||||||||  ||| ||||||||||||||    
T  25873160 ccacaccaaatccaaagcatagtctacggccactgaggtacctgagagactaacaaactatatgcacctcgaactgtgtatccactagatgggtccggaa 25873061  T
Q  202 gccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacg 301  Q
    |||||||||||||||||| ||||||||||||||| ||||||| || |||||||||| || ||||||||| |||| |||| | ||||||||||||||||||    
T  25873060 gccacacccagctatctgcaacattaggattcaaggaaacatcaaaaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacg 25872961  T
Q  302 tctc 305  Q
    ||||    
T  25872960 tctc 25872957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 14904309 - 14904130
Alignment:
Q  11 caccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacacc 110  Q
    |||| |||||||||||||||| ||| |||||||||||||||| |||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||    
T  14904309 cacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctcaacgcaaaaatggaaaccttcaagggaacctgtttgtgccacacc 14904210  T
Q  111 aaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccaga 190  Q
    ||||||| ||||||||| ||| ||||||| ||||||||| | ||||||||||||||||| |||||||||||  |||||||    
T  14904209 aaatccatagcatagtcggcggcctgaggtacctgagagattaacaaactatatgcacctcgaactgtgtatccaccaga 14904130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 9379088 - 9379409
Alignment:
Q  5 cgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgc 104  Q
    |||||||||| ||||| |||||||||| ||  |||||||||||||||| | ||||||||||||||| ||||| || |||||||||  ||||||  |||||    
T  9379088 cgacaacacctgtctaacaatcaaatttgtttttgttggtaaacgatcacagatgagcctccacgcaaaaactgataccttcaagaaaacctgactgtgc 9379187  T
Q  105 cacaccaaatccagagcatagtctgcgacctg-aggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagc 203  Q
    ||||||||||||| |||| | ||  | ||| | |||  |||||||||| ||||||  |||||||||||||||  | ||  | || || |  ||||| |||    
T  9379188 cacaccaaatccaaagcagaatcctc-accagaaggttcctgagaggttaacaaatcatatgcaccacgaacattatagccccctgacgaatccggcagc 9379286  T
Q  204 cacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtc 303  Q
    |||  |||  ||||||||||||| |||| ||| ||||||| ||| ||||| ||| || ||||| |||||| | |||| | ||||||||||||||| || |    
T  9379287 cacgtccatgtatctgaaacattgggatacaaggaaacatcaagtagtaatgccctacactccgctaacatcccctcctcccactgccataacctgcgcc 9379386  T
Q  304 tctacctccacacatccctccac 326  Q
    || ||||||||| ||||| ||||    
T  9379387 tccacctccacaaatccccccac 9379409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 7147030 - 7147119
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaaggga 92  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  7147030 ggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaacctttaaggga 7147119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 49732077 - 49731975
Alignment:
Q  9 aacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccaca 108  Q
    |||||| ||| |||||||||||||||| |||| ||||||||||| |||| ||| ||||| || ||||| || | ||||||||||||||||||||||||||    
T  49732077 aacacccgtcgagcaatcaaattagtctttgtcggtaaacgatcccggaggagtctccaagcaaaaactgaaatcttcaagggaacctgtttgtgccaca 49731978  T
Q  109 cca 111  Q
    |||    
T  49731977 cca 49731975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 30167479 - 30167383
Alignment:
Q  20 agcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcc 116  Q
    ||||||||| |||||| | |||||||| ||||| |||| ||| |||||||| ||||| || || |||||||||||||||||||||||||||||||||    
T  30167479 agcaatcaagttagtcttcgttggtaatcgatcacggaggagtctccacgcaaaaactgaaacattcaagggaacctgtttgtgccacaccaaatcc 30167383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 198 - 315
Target Start/End: Complemental strand, 49731888 - 49731771
Alignment:
Q  198 ggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacc 297  Q
    |||||||| ||||| ||||||||||||||  ||  |||   ||||| ||||||||||||| || ||||| | ||||||||||| | ||||||||| || |    
T  49731888 ggaagccaaacccatctatctgaaacattcagaaacaagagaacatcaagaagtaaagccctacactccgccaacaactcctcctcccactgccacaaac 49731789  T
Q  298 tacgtctctacctccaca 315  Q
    |||||||| |||||||||    
T  49731788 tacgtctccacctccaca 49731771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 30167301 - 30167185
Alignment:
Q  198 ggaagccacacccagctatctgaaacattagg-attcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataac 296  Q
    |||||||| |||||  ||||||||||||| || |  ||||  ||||| ||||||||||| | || ||||| |||||| |||||| | ||||||||| ||     
T  30167301 ggaagccaaacccaagtatctgaaacattcggcaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaat 30167202  T
Q  297 ctacgtctctacctcca 313  Q
    ||||| ||| |||||||    
T  30167201 ctacgcctccacctcca 30167185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 326
Target Start/End: Complemental strand, 32353448 - 32353125
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  32353448 ggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaaccttcaagggaacctgtttgt 32353349  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||| ||||||| | ||||||| ||||||||||| | ||||||| | |||||||||||||  || |||||| ||||  |||||||||||||||||||    
T  32353348 gccacactaaatccatatcatagtcggcgacctgaggtatctgagagattaacaaactatatgttcctcgaactttgtatccaccagatgggtccggaag 32353249  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| |||| ||||||||| |||||||||||||||||||||    
T  32353248 ccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctccttccactgccataacctacgt 32353149  T
Q  303 ctctacctccacacatccctccac 326  Q
    ||| |||||||||| |||| ||||    
T  32353148 ctccacctccacacctccccccac 32353125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 326
Target Start/End: Complemental strand, 48073580 - 48073259
Alignment:
Q  5 cgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgc 104  Q
    |||||||||| ||| |||||||||||| ||| |||||| ||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  48073580 cgacaacacccgtcgagcaatcaaatttgtccttgttgttaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgc 48073481  T
Q  105 cacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagcc 204  Q
    ||||||||||||||| ||| ||| ||||||| ||| ||||| ||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  48073480 cacaccaaatccagatcattgtcggcgaccttaggtacctgtgagattaacaaactatatgcacctcgaactgtgtaaccaccagatgggtccggaagcc 48073381  T
Q  205 acacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtct 304  Q
    |||||||||||||||||||| |||||||||| ||||||| |||||||||||||  | |||| |||| ||||||||| | ||||| |||||||||||||||    
T  48073380 acacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccccacactcatctagcaactcctcctcccactcccataacctacgtct 48073281  T
Q  305 ctacctccacacatccctccac 326  Q
    | |||||||||| |||| ||||    
T  48073280 ccacctccacacctccccccac 48073259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 37530563 - 37530878
Alignment:
Q  11 caccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacacc 110  Q
    |||| |||||| ||||||||| ||| |||| | |||||| || || | |||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  37530563 cacccgtctagaaatcaaattcgtccttgtcgataaacggtcacgaaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgccacacc 37530662  T
Q  111 aaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagccacaccc 210  Q
    ||||||| |||||||||| || ||| ||| |||||||||   ||||||||||||||||| |||||| ||||  ||| ||||||||| |||||||||||||    
T  37530663 aaatccaaagcatagtctacggcctaaggtacctgagagactaacaaactatatgcacctcgaactatgtatccactagatgggtctggaagccacaccc 37530762  T
Q  211 agctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacct 310  Q
    | ||||||  ||||||||||||||| ||||||| ||||||||||||| || ||||||||| |||| |||| | |||||||||||||||||||||| ||||    
T  37530763 aactatctacaacattaggattcaaggaaacatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacct 37530862  T
Q  311 ccacacatccctccac 326  Q
    |||||| |||| ||||    
T  37530863 ccacacttccccccac 37530878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 3692615 - 3692824
Alignment:
Q  2 cggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttg 101  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||| ||||| || ||| |||||| | ||||||||||||||||||||     
T  3692615 cggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggaggagccgccgcgcaaaaacgaaaaccttcaagggaacctgtttt 3692714  T
Q  102 tgccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaa 201  Q
    ||||||||||||| ||||||||| ||  |||||||||| ||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  3692715 tgccacaccaaattcagagcataatcgacgacctgaggcacctgagagattaacaaactatatgcacctcgaactgtgtatccaccagatgggtccggaa 3692814  T
Q  202 gccacaccca 211  Q
    ||||||||||    
T  3692815 gccacaccca 3692824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 14119759 - 14119877
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacacctt-caagggaacctgtttg 101  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||  | ||||| |||   ||||||||||    
T  14119759 ggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcgaaaacaaaaaccttacaaaaaaacctgtttg 14119858  T
Q  102 tgccacaccaaatccagag 120  Q
    |||||||||||||||||||    
T  14119859 tgccacaccaaatccagag 14119877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 36305773 - 36305882
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| ||| |||||||||||||||| |  ||||||| ||||| | || ||| |||||||| ||||| || ||||||||||||||||||||||    
T  36305773 ggcgacaacacctgtcgagcaatcaaattagtcttcattggtaaccgatccctgaggagtctccacgcaaaaactgaaaccttcaagggaacctgtttgt 36305872  T
Q  103 gccacaccaa 112  Q
    |||| |||||    
T  36305873 gccaaaccaa 36305882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 48265863 - 48265557
Alignment:
Q  9 aacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccaca 108  Q
    |||||| ||| |||||||||||||||| |||| |||||||||||  ||| ||| ||||| || |||||  | | ||||||||||||||||||||||||||    
T  48265863 aacacccgtcgagcaatcaaattagtctttgtcggtaaacgatcctggaggagtctccaagcaaaaactaaaatcttcaagggaacctgtttgtgccaca 48265764  T
Q  109 ccaaatccagagca-tagtctgcgacctgag-gaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagccac 206  Q
    |||| |||  | || ||| | || ||| ||| |  |||||||||| | || |  ||| ||||||| ||| |||||  || | || ||  | ||||||||     
T  48265763 ccaactccgcatcagtag-ccgc-accagagtggtcctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaa 48265666  T
Q  207 acccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctct 306  Q
    || ||  ||||||||||||| |||  |||   ||||| ||||||||||||| || ||||| ||||||||||||| | ||||||||| ||||||||||||     
T  48265665 actcatatatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacaactcctcctcccactgccacaacctacgtctcc 48265566  T
Q  307 acctccaca 315  Q
    |||||||||    
T  48265565 acctccaca 48265557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 21528167 - 21528259
Alignment:
Q  20 agcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaa 112  Q
    |||||||||||||||| |||| |||||||||||| |||  || ||||| || ||||| || | ||||||||||||||||||||||||||||||    
T  21528167 agcaatcaaattagtctttgtcggtaaacgatcttggagtagtctccaagcaaaaactgaaatcttcaagggaacctgtttgtgccacaccaa 21528259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 320
Target Start/End: Complemental strand, 30970570 - 30970442
Alignment:
Q  192 gggtccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgcc 291  Q
    ||||| ||||||||||||||  |||||||||||||||||  ||||||||||| ||||||||| ||| || ||||| | | || |||||| | ||||  ||    
T  30970570 gggtcgggaagccacacccatttatctgaaacattaggagacaaagaaacatcaagaagtaaggccctacactccgccaccatctcctcctcccacgccc 30970471  T
Q  292 ataacctacgtctctacctccacacatcc 320  Q
    | || ||||| ||| ||||||||||||||    
T  30970470 acaatctacgcctccacctccacacatcc 30970442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 36929160 - 36929265
Alignment:
Q  7 acaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgcca 106  Q
    |||||||  ||| |||||||||||||||| | |||||||| |||||   || ||| ||||| || ||||| || ||||||||||||||||||||||||||    
T  36929160 acaacactcgtcgagcaatcaaattagtcttcgttggtaaccgatccttgaggagtctccatgcaaaaactgaaaccttcaagggaacctgtttgtgcca 36929259  T
Q  107 caccaa 112  Q
     |||||    
T  36929260 aaccaa 36929265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 36306015 - 36306083
Alignment:
Q  245 aagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacctcca 313  Q
    ||||||||||||| || |||||||||||| |||||| ||||||||||| || ||||| ||| |||||||    
T  36306015 aagaagtaaagccctacactcctctaacatctcctccttccactgccacaatctacgcctccacctcca 36306083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 7396669 - 7396593
Alignment:
Q  196 ccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaac 272  Q
    |||| ||||||||||| | || ||||||||||| || ||||||||||| ||| ||||||  | || |||||||||||    
T  7396669 ccggtagccacacccaacgatttgaaacattagcatgcaaagaaacatcaagcagtaaaatcctacactcctctaac 7396593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 2631387 - 2631710
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||| |||| ||||| |||| | |||||||| ||||||||||||||||||||||    
T  2631387 ggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggaggagccgccacacaaaaacggaaaccttcaagggaacctgtttgt 2631486  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    |||||||||||| ||||||||| ||  |||||||||  ||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  2631487 gccacaccaaattcagagcataatcgacgacctgagtcacctgagagattaacaaactatatgcacctcgaactgtgtatccaccagatgggtccggaag 2631586  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| |||| ||||||||| | |||||||||||||||||||    
T  2631587 ccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgt 2631686  T
Q  303 ctctacctccacacatccctccac 326  Q
    ||| |||||||||| |||| ||||    
T  2631687 ctccacctccacacctccccccac 2631710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 20675025 - 20675334
Alignment:
Q  17 tctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcc 116  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||| |||||||    
T  20675025 tctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacgaaaaccttcaagggaacctgtttgtgccacaacaaatcc 20675124  T
Q  117 agagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagccacacccagctat 216  Q
    | ||||||||| ||||||||||| ||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  20675125 atagcatagtcggcgacctgaggtacctgagagattaacaaactatatgcacctcgaactgtgtatccaccagatgggtccggaagccacacccagctat 20675224  T
Q  217 ctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacctccacac 316  Q
    ||||||||||||||||||| ||||||| ||||||||||| | || |||| || | ||||||||| | |||||||||||||||||||||| ||||||||||    
T  20675225 ctgaaacattaggattcaaggaaacatcaagaagtaaagtcctacactcatcaagcaactcctcctcccactgccataacctacgtctccacctccacac 20675324  T
Q  317 atccctccac 326  Q
     |||| ||||    
T  20675325 ctccccccac 20675334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 55298611 - 55298932
Alignment:
Q  5 cgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgc 104  Q
    |||||||||| ||| |||||||||||| ||| |||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  55298611 cgacaacacccgtcgagcaatcaaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgc 55298710  T
Q  105 cacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagcc 204  Q
    ||||||||||||||| ||| | | |||||| |||| ||||||||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  55298711 cacaccaaatccagatcatcgacggcgaccggaggtacctgagagattaacaaactatatgcacctcgaactgtgtaaccaccagatgggtccggaagcc 55298810  T
Q  205 acacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtct 304  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||||||||| || |||| |||| ||||||||| | |||||||||||| ||||||||    
T  55298811 acacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataaactacgtct 55298910  T
Q  305 ctacctccacacatccctccac 326  Q
    | |||||||||| |||| ||||    
T  55298911 ccacctccacacctccccccac 55298932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 3 - 326
Target Start/End: Complemental strand, 8487132 - 8486809
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||| ||| |||||||| ||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  8487132 ggcgacaacacccgtctagcaatcaaatttgtccttgttggttaacgatcacggatgagcctccacgcaaaaacagaaaccttcaagggaacctgtttgt 8487033  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||||  | ||||||||||||||||| |||||||||||  ||||| || ||||||||||    
T  8487032 gccacaccaaatccatagcatagtcggcgacctgaggtacctgagacattaacaaactatatgcacctcgaactgtgtatccaccatataggtccggaag 8486933  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgt 302  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||  |||| ||||||||  | |||||||||||||||||||    
T  8486932 ccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactaatctagcaactccttctcccactgccataacctacgt 8486833  T
Q  303 ctctacctccacacatccctccac 326  Q
    ||| |||||||||| |||| ||||    
T  8486832 ctccacctccacacctccccccac 8486809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 326
Target Start/End: Complemental strand, 23873625 - 23873304
Alignment:
Q  5 cgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgc 104  Q
    |||||||||| ||| |||||||||||| ||| |||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  23873625 cgacaacacccgtcgagcaatcaaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgc 23873526  T
Q  105 cacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagcc 204  Q
    ||||||||||||||| ||| | | |||||| |||| ||||| ||| | ||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  23873525 cacaccaaatccagatcatcgacggcgaccggaggtacctgggagattaacaaactataggcacctcgaactgtgtaaccaccagatgggtccggaagcc 23873426  T
Q  205 acacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtct 304  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||||||||| || |||| |||| ||||||||| | |||||||||| ||||||||||    
T  23873425 acacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccattacctacgtct 23873326  T
Q  305 ctacctccacacatccctccac 326  Q
    | |||||||||| |||| ||||    
T  23873325 ccacctccacacctccccccac 23873304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 7663373 - 7663277
Alignment:
Q  20 agcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcc 116  Q
    ||||||||| |||||| | ||||||||||||||||||||||| |||||||| ||||| || |||||||||| |||||||||||||||||||||||||    
T  7663373 agcaatcaagttagtcttcgttggtaaacgatctcggatgagtctccacgcaaaaactgataccttcaaggaaacctgtttgtgccacaccaaatcc 7663277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 3130124 - 3130021
Alignment:
Q  9 aacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccaca 108  Q
    |||||| ||| |||||||||||||||| |||| |||||||||||||||| ||| ||||| || ||||| || | ||||||||||||||||||||| ||||    
T  3130124 aacacccgtcgagcaatcaaattagtctttgtcggtaaacgatctcggaggagtctccaagcaaaaactgaaatcttcaagggaacctgtttgtgtcaca 3130025  T
Q  109 ccaa 112  Q
    ||||    
T  3130024 ccaa 3130021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 315
Target Start/End: Complemental strand, 8655029 - 8654912
Alignment:
Q  198 ggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacc 297  Q
    |||||||| ||||| |||||||||||||| |||  |||   ||||| ||||||||||||| || ||||| ||||||| ||||| | ||||||||| ||||    
T  8655029 ggaagccaaacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacc 8654930  T
Q  298 tacgtctctacctccaca 315  Q
    |||||||| |||||||||    
T  8654929 tacgtctccacctccaca 8654912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 47541124 - 47541226
Alignment:
Q  213 ctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacctcc 312  Q
    |||||||||||||| |||  ||||  ||||| ||||||||||||| || ||||| |||||| |||||| ||||||||||| || | ||||||| ||||||    
T  47541124 ctatctgaaacattcggaaacaaaagaacatcaagaagtaaagccctacactccgctaacatctcctccttccactgccacaaacgacgtctccacctcc 47541223  T
Q  313 aca 315  Q
    |||    
T  47541224 aca 47541226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 7663195 - 7663080
Alignment:
Q  198 ggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacc 297  Q
    |||||||| |||||  ||||||||||||| |||  ||||  ||||| ||||||||||||| || ||||| |||||| |||||| | ||||||||| || |    
T  7663195 ggaagccaaacccatgtatctgaaacattcggaaacaaaagaacatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatc 7663096  T
Q  298 tacgtctctacctcca 313  Q
    |||| ||| |||||||    
T  7663095 tacgcctccacctcca 7663080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 8655207 - 8655116
Alignment:
Q  20 agcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacacca 111  Q
    ||||||||||||| || |||||||||| |||||  ||| ||| ||||| || ||||| || | ||||||||||||||| |||||||||||||    
T  8655207 agcaatcaaattaatctttgttggtaaccgatcctggaggagtctccaagcaaaaactgaaatcttcaagggaacctgattgtgccacacca 8655116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 29553702 - 29553614
Alignment:
Q  192 gggtccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctc 280  Q
    ||||| ||||| ||||||||   |||||||||||||  |||||||||||||| ||  ||||||| | || |||||||||||||||||||    
T  29553702 gggtcaggaagtcacacccaaagatctgaaacattaacattcaaagaaacatcaaacagtaaagtcctacactcctctaacaactcctc 29553614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 47540920 - 47541023
Alignment:
Q  9 aacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccaca 108  Q
    |||||| ||| |||||||||||||||| | ||  ||||||||||  ||| ||  ||| | || ||||| || | ||||||||||||||||||||||||||    
T  47540920 aacacccgtcgagcaatcaaattagtcttcgtcagtaaacgatcctggaggaatctcaatgcaaaaactgaaatcttcaagggaacctgtttgtgccaca 47541019  T
Q  109 ccaa 112  Q
    ||||    
T  47541020 ccaa 47541023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 3129935 - 3129822
Alignment:
Q  198 ggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacc 297  Q
    |||||||| ||||| |||||||||||||| |||  |||   ||||| ||||||||||||| || ||||| |||||| ||||||   ||||||||| || |    
T  3129935 ggaagccaaacccatctatctgaaacattcggaagcaagagaacatcaagaagtaaagccctacactccgctaacatctcctc---ccactgccacaaac 3129839  T
Q  298 tacgtctctacctccac 314  Q
     ||||||| ||||||||    
T  3129838 aacgtctccacctccac 3129822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 326
Target Start/End: Complemental strand, 16421162 - 16420838
Alignment:
Q  2 cggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttg 101  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||| ||||| |||||| |||||||| |||||||||||||||||||||    
T  16421162 cggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggaggagccgccacgcaaaaacggaaaccttcaagggaacctgtttg 16421063  T
Q  102 tgccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaa 201  Q
    ||||||||||||| ||||||||| ||  |||||||||  ||||||||| | ||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  16421062 tgccacaccaaattcagagcataatcgacgacctgagacacctgagagattaacaaactatatgcacctcgaactgtgtgaccaccagatgggtccggaa 16420963  T
Q  202 gccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacg 301  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||  ||| |||| ||||||||| | ||||||||||||||||||    
T  16420962 gccacacccagctatctgaaacattaggattcaaggaaacatcgagaagtaaagccctacgctcatctagcaactcctcctcccactgccataacctacg 16420863  T
Q  302 tctctacctccacacatccctccac 326  Q
    |||| |||||||||| |||| ||||    
T  16420862 tctccacctccacacctccccccac 16420838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 2872179 - 2872447
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  2872179 ggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaacctttaagggaacctgtttgt 2872278  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    ||||||||||||||| | ||||||| |||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||| |||||||||||    
T  2872279 gccacaccaaatccaaatcatagtcggcgaccggaggaacctgagagattaacaaactatatgcacctcgaactgtgtatccaccagaggggtccggaag 2872378  T
Q  203 ccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaa 271  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| |||||    
T  2872379 ccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctaa 2872447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 35405694 - 35405819
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  35405694 ggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgagcctccacgcgaaaacgaaaaccttcaagagaacctgtttgt 35405793  T
Q  103 gccacaccaaatccagagcatagtct 128  Q
    ||||||||||||||||||||||||||    
T  35405794 gccacaccaaatccagagcatagtct 35405819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 19384855 - 19384752
Alignment:
Q  9 aacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccaca 108  Q
    |||||| ||| |||||||||||||||| | || |||||||||||||||| ||| ||||| || ||||| || | ||||||||||||||||||||||||||    
T  19384855 aacacccgtcgagcaatcaaattagtcttcgtcggtaaacgatctcggaagagtctccatgcaaaaactgagatcttcaagggaacctgtttgtgccaca 19384756  T
Q  109 ccaa 112  Q
    ||||    
T  19384755 ccaa 19384752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 7452345 - 7452651
Alignment:
Q  7 acaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgcca 106  Q
    |||||||| ||| |||||||||||||||| | |||||||| |||||   || ||| ||||| || ||||| || ||||||||||||||||||||||||||    
T  7452345 acaacacccgtcgagcaatcaaattagtcttcgttggtaaccgatccttgaggagtctccatgcaaaaactgaaaccttcaagggaacctgtttgtgcca 7452444  T
Q  107 caccaaatccagagca-tagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagcca 205  Q
     ||||| |||  | || ||| | ||| |   | |  |||||||||| | || |  ||| ||||||||||| |||||  || | || ||  | ||||||||    
T  7452445 aaccaactccgcatcagtag-ccgcgtcagaatggtcctgagaggttagcacatgataagcaccacgaacagtgtatccatctgaaggagcaggaagcca 7452543  T
Q  206 cacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctc 305  Q
     ||||| |||||||||||||| |||  |||   ||||| ||||||||||||| || |||||||||| ||| |||| | ||||||||| || ||||| |||    
T  7452544 aacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactcctctaataacacctcctcccactgccacaatctacgcctc 7452643  T
Q  306 tacctcca 313  Q
     |||||||    
T  7452644 cacctcca 7452651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 19384666 - 19384572
Alignment:
Q  198 ggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgcca 292  Q
    |||||||| ||||| |||||||||||| | |||  |||   ||||| ||||||||||||| || ||||| |||||| |||||| | |||||||||    
T  19384666 ggaagccaaacccatctatctgaaacactcggaaacaagagaacatcaagaagtaaagccctacactccactaacatctcctcctcccactgcca 19384572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 6901031 - 6901111
Alignment:
Q  150 gtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagccacacccagctatctgaaacattagga 230  Q
    |||||||||  ||| |||||||| ||||||||| | |||   |||||||| | |||||||||  |||||||||||||||||    
T  6901031 gtcaacaaatcataagcaccacgcactgtgtaacccccaacagggtccgggatccacacccatttatctgaaacattagga 6901111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 32918307 - 32918520
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918307 ggcgacaacacccgtctagcaatcaaatttgtctttgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 32918406  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaag 202  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  32918407 gtcacaccaaatccagagcatagtctgcgacctgaggtacctgagaggtcaacaaactatatgcaccacgaactgtgtaaccaccatatggatccggaag 32918506  T
Q  203 ccacacccagctat 216  Q
     ||||||| |||||    
T  32918507 tcacaccctgctat 32918520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 34480953 - 34481259
Alignment:
Q  11 caccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacacc 110  Q
    |||| |||||| |||||||||   | |||| |||||||| || || | |||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  34480953 cacccgtctagaaatcaaatttaaccttgtcggtaaacggtcacgaaggagcctccacgcaaaaacggaaaccttcaagggaacctgtttgtgccacacc 34481052  T
Q  111 aaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagccacaccc 210  Q
    ||||||| |||||||||| || ||||||  ||          ||||||||||||||||| |||||||||||  ||| |||||||||||||||||||||||    
T  34481053 aaatccaaagcatagtctacggcctgagagact---------aacaaactatatgcacctcgaactgtgtatccactagatgggtccggaagccacaccc 34481143  T
Q  211 agctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacct 310  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||||| || ||||||||| |||| |||| | |||||||||||||||||||||| ||||    
T  34481144 agctatctgcaacattaggattcaaggaaacatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacct 34481243  T
Q  311 ccacacatccctccac 326  Q
    |||||| |||| ||||    
T  34481244 ccacacttccccccac 34481259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 6264349 - 6264151
Alignment:
Q  3 ggcgacaacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgt 102  Q
    |||||||||||| |||||| ||||||||| ||| |||| ||||||| ||| || ||||||||||| ||||||||||| |||||||||| |||||||||||    
T  6264349 ggcgacaacacccgtctagaaatcaaatttgtccttgtcggtaaacaatcacgaatgagcctccatgcgaaaacggaaaccttcaaggaaacctgtttgt 6264250  T
Q  103 gccacaccaaatccagagcatagtctgcgacctgaggaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaa 201  Q
    |||||||||||||||||||||||||| |||||||||| ||||| ||| | ||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  6264249 gccacaccaaatccagagcatagtctacgacctgaggtacctgcgagattaacaaactatatgcacctcgaactgtgtatccaccagatgggtccggaa 6264151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 15499792 - 15499707
Alignment:
Q  8 caacaccagtctagcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaa 93  Q
    ||||||| |||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||    
T  15499792 caacacccgtctagcaatcaaatttgtccttgttggtaaacaatcacggatgagcctccacgcaaaaacggacactttcaagggaa 15499707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 587703 - 587823
Alignment:
Q  201 agccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctac 300  Q
    |||||||| || ||||||||||||||||||| ||||||||||| ||||||||||||| || ||||||||||||  ||||| | ||||  ||||| |||||    
T  587703 agccacactcatctatctgaaacattaggatacaaagaaacatcaagaagtaaagccctacactcctctaacatatcctcctcccacatccatagcctac 587802  T
Q  301 gtctctacctccacacatccc 321  Q
    | ||| ||||||| |||||||    
T  587803 gcctccacctccagacatccc 587823  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 10487054 - 10486759
Alignment:
Q  20 agcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatccaga 119  Q
    |||||||||||||||| |||| |||||||||||  ||| ||| ||||| || ||||| || | |||||||||||||||||||||||||||||  |||  |    
T  10487054 agcaatcaaattagtctttgtcggtaaacgatcctggaggagtctccaagcaaaaactgaaatcttcaagggaacctgtttgtgccacaccagctccgca 10486955  T
Q  120 gca-tagtctgcgacctgag-gaacctgagaggtcaacaaactatatgcaccacgaactgtgtaatcaccagatgggtccggaagccacacccagctatc 217  Q
     || ||| | || ||| ||| |  |||||||||| | || |  ||| ||||||| ||| |||||  || | || ||  | |||||||| ||||| |||||    
T  10486954 tcagtag-ccgc-accagagtggtcctgagaggttagcacatgataagcaccactaacagtgtatccatctgacggagcaggaagccaaacccatctatc 10486857  T
Q  218 tgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacctccaca 315  Q
    ||||||||| |||  |||   ||||| ||||||||||||| || ||||| ||||||  ||||| | ||||||||| |||||||||||| |||||||||    
T  10486856 tgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacatgtcctcctcccactgccacaacctacgtctccacctccaca 10486759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 31862771 - 31862836
Alignment:
Q  192 gggtccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagcc 257  Q
    ||||| |||||||||||||| |||| ||||| ||||| || ||||||||||| |||||||||||||    
T  31862771 gggtctggaagccacacccatctatttgaaatattagaatgcaaagaaacatcaagaagtaaagcc 31862836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 30510007 - 30509928
Alignment:
Q  192 gggtccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaa 271  Q
    ||||| || ||||||| ||| |||||||||||||||||   ||||||||||| ||| ||||||||| ||  |||||||||    
T  30510007 gggtcaggtagccacaaccatctatctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaa 30509928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 30550347 - 30550268
Alignment:
Q  192 gggtccggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaa 271  Q
    ||||| || ||||||| ||| |||||||||||||||||   ||||||||||| ||| ||||||||| ||  |||||||||    
T  30550347 gggtcaggtagccacaaccatctatctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaa 30550268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 11817815 - 11817873
Alignment:
Q  39 gttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctg 97  Q
    |||||||| ||||||||||| |||| |||||| ||||| || |||||||| ||||||||    
T  11817815 gttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaaggaacctg 11817873  T

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Target: scaffold0418 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 7681 - 7777
Alignment:
Q  20 agcaatcaaattagtcattgttggtaaacgatctcggatgagcctccacgcgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatcc 116  Q
    ||||||||| |||||| | ||||||||||||||||||||||| |||||||| ||||| || |||||||||| |||||||||||||||||||||||||    
T  7681 agcaatcaagttagtcttcgttggtaaacgatctcggatgagtctccacgcaaaaactgataccttcaaggaaacctgtttgtgccacaccaaatcc 7777  T

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Target: scaffold0418; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 7859 - 7974
Alignment:
Q  198 ggaagccacacccagctatctgaaacattaggattcaaagaaacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacc 297  Q
    |||||||| |||||  ||||||||||||| |||  ||||  ||||| ||||||||||||| || ||||| |||||| |||||| | ||||||||| || |    
T  7859 ggaagccaaacccatgtatctgaaacattcggaaacaaaagaacatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatc 7958  T
Q  298 tacgtctctacctcca 313  Q
    |||| ||| |||||||    
T  7959 tacgcctccacctcca 7974  T

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Target: scaffold0029 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 134769 - 134693
Alignment:
Q  239 aacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacctccaca 315  Q
    ||||| ||||||||||||| || ||||| ||||||| ||||| | ||||||||| |||||||||||| |||||||||    
T  134769 aacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccaca 134693  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 312596 - 312520
Alignment:
Q  239 aacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacctccaca 315  Q
    ||||| ||||||||||||| || ||||| ||||||| ||||| | ||||||||| |||||||||||| |||||||||    
T  312596 aacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccaca 312520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 328050 - 327974
Alignment:
Q  239 aacataaagaagtaaagccgtatactcctctaacaactcctcattccactgccataacctacgtctctacctccaca 315  Q
    ||||| ||||||||||||| || ||||| ||||||| ||||| | ||||||||| |||||||||||| |||||||||    
T  328050 aacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccaca 327974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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