View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_15 (Length: 381)
Name: NF9782A_low_15
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 21469039 - 21469271
Alignment:
| Q |
13 |
agatggacatcacattgttgattgggttagacaaaaaagaggtggagttgaagtgctcgatgaaagcttaagagcaaggccagaatccgaaattgaagaa |
112 |
Q |
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| T |
21469039 |
agatggacttcacattgttgattgggttagacaaaaaagaggtggagttgaagtgctcgatgaaagcttaagagcaaggccagaatctgaaatcgaagaa |
21469138 |
T |
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| Q |
113 |
atgttgcagactttaggtgttgctttgttatgtgtaactccaagtccagatgatagaccgacaatgaaagatgtggtcgcaatgatgaaagagattaaac |
212 |
Q |
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| T |
21469139 |
atgttgcagactttaggtgttgctttgttatgtgtaactccaagtccagatgatagaccgacaatgaaagatgtggtcgcaatgatgaaagagattaaac |
21469238 |
T |
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| Q |
213 |
aggagagagatgaatgtgtgaaagttttcgatg |
245 |
Q |
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| T |
21469239 |
aggagagagatgaatgtgtgaaagttttcgatg |
21469271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 242 - 360
Target Start/End: Complemental strand, 21465998 - 21465880
Alignment:
| Q |
242 |
gatgagcatgttatgaatgaccatttgcatggatttgagtccaaagggttccagttggaaaaagatgaagggaatttggttgaagctgtgtgtgtccatg |
341 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21465998 |
gatgagcaagttatgaatgaccatttgcatggatttgagtccaaagggttccagttggaaaaagatgaagggaatttggttgaagctgtgtgtgtccatg |
21465899 |
T |
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| Q |
342 |
aaagtaagatagtaacttc |
360 |
Q |
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| T |
21465898 |
aaagtaagatagtaacttc |
21465880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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