View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_33 (Length: 304)
Name: NF9782A_low_33
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 36170411 - 36170710
Alignment:
| Q |
1 |
ggaggatgcggtgtcgacttttatcaggctagtgaaatcaaaggaggaagcaattcaggtgaattcaatagggttcattcggaatattgcctttggagat |
100 |
Q |
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| T |
36170411 |
ggaggatgcggtgtcgacttttatcaggctagtgaaatcaaaggaggaagcaattcaggtgaattcaatagggttcattcagaatattgcctttggagat |
36170510 |
T |
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| Q |
101 |
gagttggttaggcaaacggtgattagagaaggcggaatccgtgctttgttacgtgttttagatccgaaatggtcatattcttcaaaaacaaaggaaataa |
200 |
Q |
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| T |
36170511 |
gagttggttaggcaaatggtgattagagaaggcggaatccgtgctttgttacgtgttttagatccgaaatggtcatattcttcaaaaacaaaggaaataa |
36170610 |
T |
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| Q |
201 |
caatgagggctattgaaagtttgnnnnnnncttcatctagctctgtaagtattttaatgagttatggttttgtggctcagttgctatatattgttcgaca |
300 |
Q |
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| T |
36170611 |
caatgagggctattgaaagtttgtgttttacttcatctagctctgtaagtattttaatgagttatggttttgtggatcagttgctatattatgttcgaca |
36170710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 1286394 - 1286332
Alignment:
| Q |
238 |
tagctctgtaagtattttaatgagttatggttttgtggctcagttgctatatattgttcgaca |
300 |
Q |
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| T |
1286394 |
tagctctgtaagtattttaatgagttatggttttgtggatcagttgctatattatgttcgaca |
1286332 |
T |
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