View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9782A_low_4 (Length: 528)
Name: NF9782A_low_4
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_4 |
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| [»] chr8 (7 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 23 - 528
Target Start/End: Complemental strand, 8947195 - 8946690
Alignment:
| Q |
23 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8947195 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
8947096 |
T |
|
| Q |
123 |
ggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcatt |
222 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
8947095 |
ggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaatagcaacaattcatcatt |
8946996 |
T |
|
| Q |
223 |
ttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacgtgacaca |
322 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946995 |
ttgcaacaagaaactcattggagcaagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacgtgacaca |
8946896 |
T |
|
| Q |
323 |
aatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaaggggaatagcta |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8946895 |
aatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaaggggaatagcta |
8946796 |
T |
|
| Q |
423 |
cattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccgattgcaatttcatctgatataatggctgcaattgatgccgcaatatc |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
8946795 |
cattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccaattgcaatttcatctgatataatggctgcaattgatgctgcaatatc |
8946696 |
T |
|
| Q |
523 |
ggacgg |
528 |
Q |
| |
|
|||||| |
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|
| T |
8946695 |
ggacgg |
8946690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 528
Target Start/End: Original strand, 8973299 - 8973799
Alignment:
| Q |
22 |
tcactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtt |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | | ||| ||||||||||| ||||| ||||||| | |||||| |
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|
| T |
8973299 |
tcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtatgattgataccggtgtt |
8973398 |
T |
|
| Q |
122 |
tggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcat |
221 |
Q |
| |
|
||||| |||||||||||||| || ||||||| ||| || |||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||| | |
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|
| T |
8973399 |
tggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaataccaacaattcatctt |
8973498 |
T |
|
| Q |
222 |
tttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacgtgacac |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| | || ||| || | || | | || ||||| ||||| | ||||||||||| |
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|
| T |
8973499 |
tttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttgaactccacacgtgacac |
8973598 |
T |
|
| Q |
322 |
aaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaaggggaatagct |
421 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| |
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|
| T |
8973599 |
aaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattctttggttatgcaaacggaacagcaagaggaatagct |
8973698 |
T |
|
| Q |
422 |
acattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccgattgcaatttcatctgatataatggctgcaattgatgccgcaatat |
521 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||||| || ||| | | |||| | |||||||||||||| || ||| |||||||| |||||| |
|
|
| T |
8973699 |
acattgtctagagtagctatgtacaagactgcgtggggcaaagatggaca------tgcagtgtcatctgatataatagccgcagttgatgcctcaatat |
8973792 |
T |
|
| Q |
522 |
cggacgg |
528 |
Q |
| |
|
||||||| |
|
|
| T |
8973793 |
cggacgg |
8973799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 420
Target Start/End: Original strand, 8961899 - 8962295
Alignment:
| Q |
24 |
actcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtttg |
123 |
Q |
| |
|
||||||| ||||||||||| || ||||| | |||||| |||| ||||||| | | ||| ||||||||||| ||||| ||||||| | |||||||| |
|
|
| T |
8961899 |
actcacctcaattccttggtcttaatccctacaaaggggtgtggctagcttctgattatggaaaagatgtcattgttggtgtgattgataccggtgtttg |
8961998 |
T |
|
| Q |
124 |
gcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcattt |
223 |
Q |
| |
|
||| |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
8961999 |
gccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaaattatgtcaatttgaaaataccaacaattcatctttt |
8962098 |
T |
|
| Q |
224 |
tgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacgtgacacaa |
323 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||| | |||| ||||| | |||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
8962099 |
tgcaacaaaaaactcattggagcaagattcttcaacaaagggttcttggcgatgaattccaccattgatacaacaacagtgaactctacacgtgacacag |
8962198 |
T |
|
| Q |
324 |
atggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaaggggaatagc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| || ||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
8962199 |
atggtcatggaacccacacttcaacaacggtagcggggaatcaggttaatggtgcatcattcttcggttatgcaaatggaacagcaagaggaatagc |
8962295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 451
Target Start/End: Complemental strand, 9950244 - 9950079
Alignment:
| Q |
286 |
cattaatacaacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttc |
385 |
Q |
| |
|
||||||||||||||| ||||| |||||| || | ||| ||| | | | |||||||||||| |||| || | ||||||||||||||||||||| |||| |
|
|
| T |
9950244 |
cattaatacaacaattgtgaatactacatgtcatacatatgattaagagacccacacttcattaacaacaacttgaaatcaagttgatggtgcatttttc |
9950145 |
T |
|
| Q |
386 |
tttggttatgcaaatggaacggcaaggggaatagctacattgtctagagtgtctatgtacaagatt |
451 |
Q |
| |
|
|||||||||| |||| |||| ||| | |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
9950144 |
tttggttatgtaaatcgaactacaaaagaaataattacattgtctagagtagctatgtacaagatt |
9950079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 8957087 - 8957140
Alignment:
| Q |
211 |
caattcatcattttgcaacaagaaactcattggagctagattcttcaataaagg |
264 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || | ||||||||| ||||| |
|
|
| T |
8957087 |
caattcatctctttgcaacaagaaactcattggtgccaaattcttcaacaaagg |
8957140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 8957197 - 8957270
Alignment:
| Q |
324 |
atggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgca |
397 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| ||||| |||||||| ||| || || |||||||||||| |
|
|
| T |
8957197 |
atggtcatgggactcacacttcatcaacagcagctggaaacagagttgatgatgcttcattttttggttatgca |
8957270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 8962351 - 8962400
Alignment:
| Q |
479 |
gcaatttcatctgatataatggctgcaattgatgccgcaatatcggacgg |
528 |
Q |
| |
|
||| |||||||||| | ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
8962351 |
gcactttcatctgacacaatagctgcaattgatgccgcaatatcagacgg |
8962400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 23 - 528
Target Start/End: Complemental strand, 21688346 - 21687835
Alignment:
| Q |
23 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
122 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||| | ||||||||||||| ||||| | |||||| ||||| ||||| ||||| | || ||| | ||||||| |
|
|
| T |
21688346 |
cactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgtaatagacactggtgttt |
21688247 |
T |
|
| Q |
123 |
ggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaaca---------- |
212 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| | ||||||||||||| ||| |||||| |
|
|
| T |
21688246 |
ggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttgagaattccaacatccagtcaat |
21688147 |
T |
|
| Q |
213 |
--attcatcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacact |
310 |
Q |
| |
|
||| ||| || |||||||||||||||||||||||||| |||||||| ||||| || | || ||| | || ||||||| ||||||||| ||||| | |
|
|
| T |
21688146 |
caatttatctttgtgcaacaagaaactcattggagctaggttcttcaacaaaggcttcttggcaaaacactccaacattagtacaacaattttgaactcc |
21688047 |
T |
|
| Q |
311 |
acacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaa |
410 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
21688046 |
acacgtgacacaaacggtcacgggacacatacttcaacaacagcagctggaagcaaagttgatggtgcatctttctttggctatgcaaatggaacagcaa |
21687947 |
T |
|
| Q |
411 |
ggggaatagctacattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccgattgcaatttcatctgatataatggctgcaattga |
510 |
Q |
| |
|
| || |||||| ||| ||||||||| |||| ||||||| || ||||||| || ||| ||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
21687946 |
gaggtatagcttcatcgtctagagtagctatatacaagactgcgtggggaaaagatggaga------cgcactttcatctgatataatagctgcaattga |
21687853 |
T |
|
| Q |
511 |
tgccgcaatatcggacgg |
528 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
21687852 |
tgctgcaatatctgacgg |
21687835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 34963857 - 34963779
Alignment:
| Q |
105 |
tgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
183 |
Q |
| |
|
|||||||| |||| |||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
34963857 |
tgattgacacaggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 34963754 - 34963707
Alignment:
| Q |
211 |
caattcatcattttgcaacaagaaactcattggagctagattcttcaa |
258 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34963754 |
caattcatctctttgcaacaagaaactcattggagctaaattcttcaa |
34963707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 34963657 - 34963572
Alignment:
| Q |
311 |
acacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgc |
396 |
Q |
| |
|
|||||||||||| | ||||||||||| || ||||||||||||||||| |||| |||||| |||||| |||||||||||||| |
|
|
| T |
34963657 |
acacgtgacacagaaggtcatggaactcatacttcaacaacagcagctggaagcagagttgaccatgcatcattctttggttatgc |
34963572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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