View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_48 (Length: 268)

Name: NF9782A_low_48
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_48
NF9782A_low_48
[»] chr8 (6 HSPs)
chr8 (1-268)||(10440143-10440413)
chr8 (2-45)||(12170589-12170632)
chr8 (2-45)||(12415017-12415060)
chr8 (1-33)||(3943758-3943790)
chr8 (1-34)||(30585120-30585153)
chr8 (1-29)||(8431282-8431310)
[»] chr7 (5 HSPs)
chr7 (2-43)||(43395519-43395560)
chr7 (3-43)||(43434512-43434552)
chr7 (5-40)||(11470945-11470980)
chr7 (1-33)||(2811269-2811301)
chr7 (1-33)||(6632428-6632460)
[»] chr1 (2 HSPs)
chr1 (3-41)||(50187300-50187338)
chr1 (5-33)||(10342575-10342603)
[»] chr6 (2 HSPs)
chr6 (1-41)||(5581013-5581054)
chr6 (1-40)||(10338610-10338649)
[»] chr3 (3 HSPs)
chr3 (1-34)||(17105269-17105302)
chr3 (1-45)||(31652444-31652488)
chr3 (1-55)||(31702673-31702727)
[»] chr5 (3 HSPs)
chr5 (1-43)||(11023465-11023507)
chr5 (1-43)||(34166121-34166163)
chr5 (1-33)||(28735832-28735864)
[»] chr4 (1 HSPs)
chr4 (7-35)||(21606619-21606647)
[»] chr2 (1 HSPs)
chr2 (1-33)||(22556246-22556278)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 10440413 - 10440143
Alignment:
Q  1 acattcaatcacttttattttcttaaattattatcgatgtctatgaatcagtgttcagtgtctacatctgtcagtgcttcattggactggagtagataga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10440413 acattcaatcacttttattttcttaaattattatcgatgtctatgaaacagtgttcagtgtctacatctgtcagtgcttcattggactggagtagataga 10440314  T
Q  101 ggtagtctaaaagattgagttagatggtttagttgactgatccacgtggaaaacatcaccatgtggaacaagcttggt---tgtttatttttctgtcaaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||    
T  10440313 ggtagtctaaaagattgagttagatggtttagttgactgatccacgtggaaaacatcaccaggtggaacaagcttggttgttgtttatttttctgtcaaa 10440214  T
Q  198 cttatgttatcaagttgcgaaagttgtgaacttaaatgcaaatgttctgttattatgttgtcaagttcctg 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10440213 cttatgttatcaagttgcgaaagttgtgaacttaaatgcaaatgttatgttattatgttgtcaagttcctg 10440143  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 12170632 - 12170589
Alignment:
Q  2 cattcaatcacttttattttcttaaattattatcgatgtctatg 45  Q
    ||||||||||||||||||||||||||||||||| | ||||||||    
T  12170632 cattcaatcacttttattttcttaaattattattggtgtctatg 12170589  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 12415060 - 12415017
Alignment:
Q  2 cattcaatcacttttattttcttaaattattatcgatgtctatg 45  Q
    ||||||||||||||||||||||||||||||||| | ||||||||    
T  12415060 cattcaatcacttttattttcttaaattattattggtgtctatg 12415017  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3943790 - 3943758
Alignment:
Q  1 acattcaatcacttttattttcttaaattatta 33  Q
    |||||||||||||||||||||||||||||||||    
T  3943790 acattcaatcacttttattttcttaaattatta 3943758  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30585120 - 30585153
Alignment:
Q  1 acattcaatcacttttattttcttaaattattat 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  30585120 acattcaatcactttcattttcttaaattattat 30585153  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8431282 - 8431310
Alignment:
Q  1 acattcaatcacttttattttcttaaatt 29  Q
    |||||||||||||||||||||||||||||    
T  8431282 acattcaatcacttttattttcttaaatt 8431310  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 43395560 - 43395519
Alignment:
Q  2 cattcaatcacttttattttcttaaattattatcgatgtcta 43  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  43395560 cattcaatcacttttattttattaaattattatcgatgtcta 43395519  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 43434552 - 43434512
Alignment:
Q  3 attcaatcacttttattttcttaaattattatcgatgtcta 43  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  43434552 attcaatcactttcattttcttaaattattatcggtgtcta 43434512  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 11470980 - 11470945
Alignment:
Q  5 tcaatcacttttattttcttaaattattatcgatgt 40  Q
    ||||||||||||||||||||||||||||||| ||||    
T  11470980 tcaatcacttttattttcttaaattattatcaatgt 11470945  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2811301 - 2811269
Alignment:
Q  1 acattcaatcacttttattttcttaaattatta 33  Q
    ||||||||| |||||||||||||||||||||||    
T  2811301 acattcaattacttttattttcttaaattatta 2811269  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6632460 - 6632428
Alignment:
Q  1 acattcaatcacttttattttcttaaattatta 33  Q
    |||||||||||||||||||||||||| ||||||    
T  6632460 acattcaatcacttttattttcttaatttatta 6632428  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 50187338 - 50187300
Alignment:
Q  3 attcaatcacttttattttcttaaattattatcgatgtc 41  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  50187338 attcaatcacttttattttcttaaattattattgatgtc 50187300  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 10342575 - 10342603
Alignment:
Q  5 tcaatcacttttattttcttaaattatta 33  Q
    |||||||||||||||||||||||||||||    
T  10342575 tcaatcacttttattttcttaaattatta 10342603  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5581054 - 5581013
Alignment:
Q  1 acattcaatcacttttattttc-ttaaattattatcgatgtc 41  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  5581054 acattcaatcacttttattttctttaaattattatcgatgtc 5581013  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10338649 - 10338610
Alignment:
Q  1 acattcaatcacttttattttcttaaattattatcgatgt 40  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  10338649 acattcaatcacttctattttcttaaattattatcaatgt 10338610  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17105302 - 17105269
Alignment:
Q  1 acattcaatcacttttattttcttaaattattat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  17105302 acattcaatcacttttattttcttaaattattat 17105269  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31652488 - 31652444
Alignment:
Q  1 acattcaatcacttttattttcttaaattattatcgatgtctatg 45  Q
    |||||||||||||| ||||||||||||||||||||| || |||||    
T  31652488 acattcaatcacttctattttcttaaattattatcggtgactatg 31652444  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31702727 - 31702673
Alignment:
Q  1 acattcaatcacttttattttcttaaattattatcgatgtctatgaatcagtgtt 55  Q
    |||||||||||||  ||||||||||||||||||| | |||||||  |||||||||    
T  31702727 acattcaatcactactattttcttaaattattattggtgtctatatatcagtgtt 31702673  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11023507 - 11023465
Alignment:
Q  1 acattcaatcacttttattttcttaaattattatcgatgtcta 43  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||    
T  11023507 acattcaatcattttaattttcttaaattgttatcgatgtcta 11023465  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34166163 - 34166121
Alignment:
Q  1 acattcaatcacttttattttcttaaattattatcgatgtcta 43  Q
    ||||||||||| ||| |||||||||||||||||| ||||||||    
T  34166163 acattcaatcaatttcattttcttaaattattattgatgtcta 34166121  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28735832 - 28735864
Alignment:
Q  1 acattcaatcacttttattttcttaaattatta 33  Q
    |||||||||||||| ||||||||||||||||||    
T  28735832 acattcaatcacttctattttcttaaattatta 28735864  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 21606619 - 21606647
Alignment:
Q  7 aatcacttttattttcttaaattattatc 35  Q
    |||||||||||||||||||||||||||||    
T  21606619 aatcacttttattttcttaaattattatc 21606647  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22556278 - 22556246
Alignment:
Q  1 acattcaatcacttttattttcttaaattatta 33  Q
    |||||||||||||| ||||||||||||||||||    
T  22556278 acattcaatcacttctattttcttaaattatta 22556246  T

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