View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_5 (Length: 486)

Name: NF9782A_low_5
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_5
NF9782A_low_5
[»] chr2 (4 HSPs)
chr2 (276-469)||(32124760-32124953)
chr2 (21-239)||(26317401-26317602)
chr2 (127-239)||(7708871-7708984)
chr2 (277-354)||(32150109-32150184)
[»] chr1 (4 HSPs)
chr1 (131-234)||(24107577-24107679)
chr1 (109-217)||(37960072-37960180)
chr1 (131-232)||(30699876-30699977)
chr1 (128-232)||(11915937-11916040)
[»] chr8 (1 HSPs)
chr8 (133-217)||(32027272-32027356)
[»] chr6 (4 HSPs)
chr6 (131-215)||(25329428-25329512)
chr6 (131-215)||(26198348-26198432)
chr6 (131-217)||(6058949-6059034)
chr6 (128-217)||(10587268-10587357)
[»] chr7 (3 HSPs)
chr7 (133-232)||(38652360-38652459)
chr7 (132-237)||(9895319-9895424)
chr7 (127-217)||(15125872-15125960)
[»] chr4 (2 HSPs)
chr4 (109-202)||(21618797-21618890)
chr4 (132-232)||(2187070-2187168)
[»] chr5 (3 HSPs)
chr5 (132-217)||(18892307-18892392)
chr5 (129-232)||(3613449-3613552)
chr5 (131-232)||(22626260-22626361)
[»] chr3 (2 HSPs)
chr3 (109-217)||(22735104-22735212)
chr3 (111-217)||(17263444-17263551)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 276 - 469
Target Start/End: Original strand, 32124760 - 32124953
Alignment:
Q  276 caataaatactaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaagggttaaacctggaattccaattt 375  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32124760 caataaatgctaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaaggattaaacctggaattccaattt 32124859  T
Q  376 tacctgttgtagtcaattttacttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtc 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32124860 tacctgttgtagtcaattttacttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtc 32124953  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 26317401 - 26317602
Alignment:
Q  21 tttcgactactcatgcttcaatgtttgtatgtgcacgtttgattttgcataatgacatcacaacattcactaagtgactatcatatcttgtggaatgagc 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||  |||             
T  26317401 tttcgactactcatccttcaatgtttgtatgtgcacgtttgattttgtataacgacatcacaacattcactaagtgactatcatattatgt--------- 26317491  T
Q  121 atagctgcaggttatttaagca-taaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagtta 219  Q
             |||||||||||||  ||||||||||| || ||| ||||||||||||||||||||||||||||||||| || | |||||| |||||||||||    
T  26317492 ---------ggttatttaagcagaaaagaaaacactatactttagttattggaaaaggttaagtcatattctttatagtaggtgaaagttaagaaagtta 26317582  T
Q  220 attttatttttggtattcat 239  Q
    ||||| |||||| |||||||    
T  26317583 attttgtttttgctattcat 26317602  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 7708984 - 7708871
Alignment:
Q  127 gcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaa-ggttaagtcatattctttatggtggctgaaagctaagaaagttaatttta 225  Q
    |||||||||||||||| | ||||||  | ||| ||||| |||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||     
T  7708984 gcaggttatttaagcaaagagaaaattctatgattcagatattggaaaaaggttaagtcattgtctttatggtggcttaaagctaagaaagttaattttg 7708885  T
Q  226 tttttggtattcat 239  Q
    ||||||||||||||    
T  7708884 tttttggtattcat 7708871  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 354
Target Start/End: Original strand, 32150109 - 32150184
Alignment:
Q  277 aataaatactaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaaggg 354  Q
    |||||||  |||||||||| ||||||||| |||||||||  ||||||||||  ||||| ||||||||||| |||||||    
T  32150109 aataaatgttaaaaattcactataagtgaaggaaattatgtagggtctctc--taataggcacacttttataaaaggg 32150184  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 24107679 - 24107577
Alignment:
Q  131 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttattttt 230  Q
    |||||||||||| |||||||| |||||  |||| ||||||| ||| || |||| | |||||||||||||| ||||||||||||||| |||||||||||||    
T  24107679 gttatttaagcagaaagaaaataccatatttcatttattgggaaaagtcaagtta-attctttatggtggttgaaagctaagaaagctaattttattttt 24107581  T
Q  231 ggta 234  Q
    ||||    
T  24107580 ggta 24107577  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 37960072 - 37960180
Alignment:
Q  109 tgtggaatgagcatagctgcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagc 208  Q
    |||||||||||| || |||||||||||||||||| ||| |||| || ||| || | ||||| ||||| ||||||||  ||||||||||||| ||  ||||    
T  37960072 tgtggaatgagcgtaactgcaggttatttaagcagaaaaaaaatactatgttttaattattagaaaaagttaagtcgcattctttatggtgtcttcaagc 37960171  T
Q  209 taagaaagt 217  Q
    |||||||||    
T  37960172 taagaaagt 37960180  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 30699876 - 30699977
Alignment:
Q  131 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttattttt 230  Q
    |||||||||||| |||||||| || ||| |||| |||||  ||||| ||||||| |||||||||| ||||||  || ||||||||||  |||||||||||    
T  30699876 gttatttaagcagaaagaaaatactatgtttcaattattaaaaaagtttaagtcttattctttattgtggcttcaaactaagaaagtccattttattttt 30699975  T
Q  231 gg 232  Q
    ||    
T  30699976 gg 30699977  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 11916040 - 11915937
Alignment:
Q  128 caggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttatt 227  Q
    ||||||||| ||||| |||||||| || ||| |||| |||||  |||| |||||||| ||||||||||||||| |  |||||||||||||   |||||||    
T  11916040 caggttattgaagcagaaagaaaatactatg-ttcaattattaaaaaatgttaagtcttattctttatggtggattcaagctaagaaagtccgttttatt 11915942  T
Q  228 tttgg 232  Q
    |||||    
T  11915941 tttgg 11915937  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 32027356 - 32027272
Alignment:
Q  133 tatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 217  Q
    |||||||||| |||||||| || || ||||||||||| |||||||| ||||| ||||||||||||| |||  |||||||||||||    
T  32027356 tatttaagcagaaagaaaatactattcttcagttattagaaaaggtcaagtcttattctttatggtagcttcaagctaagaaagt 32027272  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 25329512 - 25329428
Alignment:
Q  131 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaa 215  Q
    |||||||||||| |||||||| || ||| |||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  25329512 gttatttaagcagaaagaaaatactatgtttcaattattagaaaaagttaagtcttattctttatggtggcttaaaactaagaaa 25329428  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 26198348 - 26198432
Alignment:
Q  131 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaa 215  Q
    |||||||||||| |||||||| || ||| |||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  26198348 gttatttaagcagaaagaaaatactatgtttcaattattagaaaaagttaagtcttattctttatggtggcttaaaactaagaaa 26198432  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 6058949 - 6059034
Alignment:
Q  131 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 217  Q
    |||||||||||| |||||||| || ||| |||| ||||| |||||  ||||||| |||||||||||||||||  ||| |||||||||    
T  6058949 gttatttaagcagaaagaaaatactatgtttcaattattagaaaaa-ttaagtcgtattctttatggtggcttcaagataagaaagt 6059034  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 10587268 - 10587357
Alignment:
Q  128 caggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 217  Q
    |||| ||||||| || |||||||| |  ||| |||| ||||| ||||| |||||||| |||||||||||||||||  ||||| |||||||    
T  10587268 caggctatttaaccagaaagaaaataatatgtttcaattattagaaaaagttaagtcgtattctttatggtggcttcaagcttagaaagt 10587357  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 38652360 - 38652459
Alignment:
Q  133 tatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttatttttgg 232  Q
    |||||||||| |||||||| || ||| |||| ||||| ||||| |||||||| |||||||||||||| ||  ||| |||||||||  |||||||||||||    
T  38652360 tatttaagcagaaagaaaatactatgtttcaattattagaaaaagttaagtcgtattctttatggtgacttcaagttaagaaagtctattttatttttgg 38652459  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 9895424 - 9895319
Alignment:
Q  132 ttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttatttttg 231  Q
    ||||||||||| ||||||||    ||| |||| |||||| |||| |||||||| |||||||||| ||||||  |||| ||||||||  ||||| ||||||    
T  9895424 ttatttaagcagaaagaaaatgttatgtttcaattattgaaaaatgttaagtcttattctttatagtggcttcaagccaagaaagtccattttgtttttg 9895325  T
Q  232 gtattc 237  Q
    ||||||    
T  9895324 gtattc 9895319  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 15125872 - 15125960
Alignment:
Q  127 gcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 217  Q
    |||||||||||||||| |||  ||| || ||| |||| ||||| ||||| |||||||  ||||||||||||||||| |||| |||||||||    
T  15125872 gcaggttatttaagcagaaa--aaatactatgtttcaattattagaaaaagttaagttgtattctttatggtggcttaaagttaagaaagt 15125960  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 21618797 - 21618890
Alignment:
Q  109 tgtggaatgagcatagctgcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggtta-agtcatattctttatggtggct 202  Q
    |||||||||||| || | |||||||||||||||| ||| |||| |||||| |||| ||||| ||||| |||| |||| |||||||||||||||||    
T  21618797 tgtggaatgagcgtaacagcaggttatttaagcagaaa-aaaataccatgtttcaattattagaaaaagttatagtcgtattctttatggtggct 21618890  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 2187168 - 2187070
Alignment:
Q  132 ttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttatttttg 231  Q
    ||||||||||| |||||||| || ||| |||| ||||| ||||| ||||||||  ||| ||||||||||||  ||| ||||||| ||  |||| ||||||    
T  2187168 ttatttaagcaaaaagaaaatactatgtttcaattattagaaaaagttaagtc--attttttatggtggcttcaagttaagaaaattccttttgtttttg 2187071  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 18892307 - 18892392
Alignment:
Q  132 ttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 217  Q
    ||||||||||| |||||||| || ||  |||| ||||| ||||| |||||| | ||||||||||||||||| |||| |||||||||    
T  18892307 ttatttaagcagaaagaaaatactatttttcacttattagaaaaagttaagccgtattctttatggtggcttaaagttaagaaagt 18892392  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 3613449 - 3613552
Alignment:
Q  129 aggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttattt 228  Q
    |||||||||||||| |||| ||| || ||| |||| |||||  |||| ||| ||||  ||||||||||||||||  ||||||||||||||  |||| |||    
T  3613449 aggttatttaagcagaaaggaaatactatgtttcaattattataaaaagtttagtcgcattctttatggtggcttcaagctaagaaagtttgttttgttt 3613548  T
Q  229 ttgg 232  Q
    ||||    
T  3613549 ttgg 3613552  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 22626260 - 22626361
Alignment:
Q  131 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttattttt 230  Q
    |||||||||||| |||||||| |  ||| |||| ||||| ||||| |||||||| ||||||||   |||| | |||| ||||||||||  |||| |||||    
T  22626260 gttatttaagcagaaagaaaataatatgtttcaattattagaaaaagttaagtcgtattcttttatgtggtttaaagttaagaaagttcgttttgttttt 22626359  T
Q  231 gg 232  Q
    ||    
T  22626360 gg 22626361  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 22735104 - 22735212
Alignment:
Q  109 tgtggaatgagcatagctgcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagc 208  Q
    |||||||||||| || |  || |||||||||||| |||||||| |  ||| |||| ||||| ||||||||||| || ||||||||||||||| |  |||     
T  22735104 tgtggaatgagcgtaacaacatgttatttaagcagaaagaaaatattatgtttcaattattagaaaaggttaaatcttattctttatggtggattcaagt 22735203  T
Q  209 taagaaagt 217  Q
    |||||||||    
T  22735204 taagaaagt 22735212  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 17263444 - 17263551
Alignment:
Q  111 tggaatgagcatagctgcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaag-gttaagtcatattctttatggtggctgaaagct 209  Q
    |||||||||| || | | ||||||||||| || ||| |||| || ||| |||| ||||| |||||  |||||||  ||||||||||||||||| ||||||    
T  17263444 tggaatgagcgtaacaggaggttatttaaacagaaataaaatactatgtttcaattattagaaaaaagttaagttgtattctttatggtggcttaaagct 17263543  T
Q  210 aagaaagt 217  Q
    ||| ||||    
T  17263544 aaggaagt 17263551  T

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