View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_50 (Length: 262)
Name: NF9782A_low_50
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 33810743 - 33811003
Alignment:
| Q |
1 |
gaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810743 |
gaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccctt |
33810842 |
T |
|
| Q |
101 |
ggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810843 |
ggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagccat |
33810942 |
T |
|
| Q |
201 |
ccctttactctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga |
261 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810943 |
ccctttaccctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga |
33811003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 33870212 - 33870472
Alignment:
| Q |
1 |
gaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccctt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33870212 |
gaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccctt |
33870311 |
T |
|
| Q |
101 |
ggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33870312 |
ggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagccat |
33870411 |
T |
|
| Q |
201 |
ccctttactctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga |
261 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33870412 |
ccctttaccctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga |
33870472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 33830918 - 33831068
Alignment:
| Q |
1 |
gaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccctt |
100 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | |||||| |
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| T |
33830918 |
gaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccctt |
33831017 |
T |
|
| Q |
101 |
ggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct |
151 |
Q |
| |
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|||| ||| ||||||| |||||| ||| ||||||||||||||||||||| |
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| T |
33831018 |
ggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct |
33831068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 33893081 - 33893231
Alignment:
| Q |
1 |
gaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccctt |
100 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | |||||| |
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| T |
33893081 |
gaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccctt |
33893180 |
T |
|
| Q |
101 |
ggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct |
151 |
Q |
| |
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|||| ||| ||||||| |||||| ||| ||||||||||||||||||||| |
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| T |
33893181 |
ggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct |
33893231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 24408960 - 24408805
Alignment:
| Q |
2 |
aggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagacccttg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
24408960 |
aggggtaagagagcaagggatcaaggattctaagatcatgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaatttgagaccagtg |
24408861 |
T |
|
| Q |
102 |
gccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaa |
157 |
Q |
| |
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|||| ||| ||| |||||||||||||||| | |||||||||||||||||||||||| |
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| T |
24408860 |
gccattactatccaaagcaatccagcttccaaaagactgtgtcttcttcttcacaa |
24408805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24410124 - 24410211
Alignment:
| Q |
1 |
gaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaa |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24410124 |
gaggggtaagagagcaagggatcaaggattctaagatcacatgcattaatctgaaccctatgcatgatagcatacttgtccacatcaa |
24410211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 24410634 - 24410676
Alignment:
| Q |
115 |
aaagcaatccagcttctagaagactgtgtcttcttcttcacaa |
157 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||| |
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| T |
24410634 |
aaagcaatccagcttccaaaagactgtgtcttcttcttcacaa |
24410676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 209
Target Start/End: Complemental strand, 24408808 - 24408777
Alignment:
| Q |
178 |
acaacgctaccatctcgagccatccctttact |
209 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24408808 |
acaacgctaccatctcgagccatccctttact |
24408777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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