View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_57 (Length: 254)
Name: NF9782A_low_57
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 31025379 - 31025618
Alignment:
| Q |
14 |
atacacctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattgaaatattagttaaaattctaatattaaacgatatt |
113 |
Q |
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| T |
31025379 |
atactcctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattcaaatattagttaaaattctaatattaaacgatatt |
31025478 |
T |
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| Q |
114 |
tattagtatatcaaatgcaacattgctatgaggaatatctgaacacactcacatcactaaaaattgattgaatgcttttagtac----atttattttatg |
209 |
Q |
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| T |
31025479 |
tattagtatatcaaatgcaacattgctacgaggaatatgtgaacaaactcatatcgctaaaaattgattgaaagtttttagtacattaatttattttatg |
31025578 |
T |
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| Q |
210 |
aaaagttctaaattgagaattagaataaagggttaattgt |
249 |
Q |
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| T |
31025579 |
aaaagttctaaattgagaattaaaataaagggttaattgt |
31025618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 31073711 - 31073784
Alignment:
| Q |
174 |
aaattgattgaatgcttttagtacatttattttatgaaaagttctaaattgagaattagaataaagggttaatt |
247 |
Q |
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| T |
31073711 |
aaattgattgaatgcttttagcatatttattttatgaaaagttataaattaagaattataataattggttaatt |
31073784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 31040719 - 31040747
Alignment:
| Q |
203 |
ttttatgaaaagttctaaattgagaatta |
231 |
Q |
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| T |
31040719 |
ttttatgaaaagttctaaattgagaatta |
31040747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 33533813 - 33533934
Alignment:
| Q |
104 |
aaacgatatttattagtatatcaaatgcaacattgctatgaggaatatctgaacacactcacatcactaaaaattgattgaatgcttttagtacatttat |
203 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||| || ||| ||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
33533813 |
aaacgatatttattagtatatcaaatgcaacatttttatgatgaatatgtgtacaaactcatatcgttaaaatttgattgaatgcttttagtacatttat |
33533912 |
T |
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| Q |
204 |
tttatgaaaagttctaaattga |
225 |
Q |
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| T |
33533913 |
tttatgaaaagtcctaaattga |
33533934 |
T |
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