View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_59 (Length: 251)
Name: NF9782A_low_59
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 17733254 - 17733018
Alignment:
| Q |
1 |
ggatatgtgaaatgaggtaagcaatagaaataaaaacttaccatatctaaggccattcttgttacagaagcatactcaagtattataaaggaaaaataaa |
100 |
Q |
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| T |
17733254 |
ggatatgtgaaatgaggtaagaaatagaaatagaaacttaccatatctaaggccattcttgtt-cagaagcatactcaagtattataaaggaaaaataaa |
17733156 |
T |
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| Q |
101 |
gttgtcttccaataaataccaaaacaaaatttcatgacaattatatgatcag-----aaaggcagccagagaagatttcaatttaatggctctgtcaagc |
195 |
Q |
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| T |
17733155 |
gttgtcttccaataaataccaaaacaaaatttcatgacaattatatgatcagaaattaaaggcagccagagaagatttcaatttaatggctctgtcaagc |
17733056 |
T |
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| Q |
196 |
atggattttactattactattacatataagactgatgt |
233 |
Q |
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| T |
17733055 |
atggattttactattactattacatataagactgatgt |
17733018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 33214405 - 33214336
Alignment:
| Q |
142 |
tatatgatcagaaaggcagccagagaagatttcaatttaatggctctgtcaagcatggattttactatta |
211 |
Q |
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| T |
33214405 |
tatacgatcagaaaggcagccagagaagatttcaatttaatggctctgtcaagcatgaattttactatta |
33214336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 10004279 - 10004228
Alignment:
| Q |
2 |
gatatgtgaaatgaggtaagcaatagaaataaaaacttaccatatctaaggc |
53 |
Q |
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| T |
10004279 |
gatatgtgaaatgaggtaagaaatagaaatagaaacttaccatatctaaggc |
10004228 |
T |
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