View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_62 (Length: 248)

Name: NF9782A_low_62
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_62
NF9782A_low_62
[»] chr3 (4 HSPs)
chr3 (21-248)||(48384395-48384622)
chr3 (115-208)||(48397611-48397703)
chr3 (107-163)||(14145869-14145925)
chr3 (108-163)||(48364936-48364991)
[»] scaffold0024 (1 HSPs)
scaffold0024 (105-163)||(27531-27589)
[»] chr1 (12 HSPs)
chr1 (105-155)||(49517025-49517075)
chr1 (105-163)||(25006091-25006149)
chr1 (105-157)||(15360849-15360901)
chr1 (107-163)||(30371105-30371161)
chr1 (103-154)||(34179938-34179989)
chr1 (105-164)||(44032055-44032114)
chr1 (105-163)||(27738237-27738295)
chr1 (105-163)||(49557096-49557154)
chr1 (105-150)||(1879097-1879142)
chr1 (123-163)||(7218131-7218171)
chr1 (107-163)||(28467364-28467420)
chr1 (115-163)||(30257648-30257696)
[»] chr8 (5 HSPs)
chr8 (107-164)||(34551077-34551134)
chr8 (115-163)||(34770857-34770905)
chr8 (165-236)||(1664452-1664523)
chr8 (105-163)||(42597356-42597414)
chr8 (115-163)||(2093244-2093292)
[»] chr5 (6 HSPs)
chr5 (107-157)||(583836-583886)
chr5 (105-147)||(10303756-10303798)
chr5 (105-155)||(14295461-14295511)
chr5 (105-141)||(35095862-35095898)
chr5 (105-157)||(35135725-35135777)
chr5 (94-138)||(39128583-39128627)
[»] chr2 (8 HSPs)
chr2 (105-163)||(42907314-42907372)
chr2 (110-163)||(11513858-11513911)
chr2 (105-163)||(29935958-29936016)
chr2 (105-163)||(37053549-37053607)
chr2 (115-163)||(33942115-33942163)
chr2 (123-163)||(35755559-35755599)
chr2 (105-192)||(39567858-39567945)
chr2 (115-155)||(43141836-43141876)
[»] chr4 (8 HSPs)
chr4 (105-154)||(8130129-8130178)
chr4 (105-157)||(4071837-4071889)
chr4 (118-164)||(927260-927306)
chr4 (115-157)||(13949907-13949949)
chr4 (105-163)||(49219094-49219152)
chr4 (105-163)||(54325094-54325152)
chr4 (107-163)||(10192241-10192297)
chr4 (91-163)||(29373944-29374016)
[»] chr7 (8 HSPs)
chr7 (107-163)||(1417221-1417277)
chr7 (105-160)||(35536062-35536117)
chr7 (105-163)||(27481351-27481409)
chr7 (105-163)||(49060495-49060553)
chr7 (105-154)||(23918912-23918961)
chr7 (91-163)||(9527147-9527219)
chr7 (115-155)||(27548228-27548268)
chr7 (54-90)||(46056149-46056185)
[»] scaffold0199 (1 HSPs)
scaffold0199 (165-236)||(6893-6964)
[»] chr6 (7 HSPs)
chr6 (116-155)||(5550098-5550137)
chr6 (107-162)||(22742323-22742378)
chr6 (105-163)||(4006669-4006727)
chr6 (105-139)||(29269851-29269885)
chr6 (106-155)||(281913-281962)
chr6 (105-154)||(29274295-29274344)
chr6 (105-157)||(24836262-24836314)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 48384622 - 48384395
Alignment:
Q  21 atcaaaacaaggagaagggaaaatacacataggccatggttagataaacaacttaattaagcatttatcaatatataagccaaatctataacagaagata 120  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48384622 atcaaaacaaggagaagggaaaatacacataggtcatgggtagataaacaacttaattaagcatttatcaatatataagccaaatctataacagaagata 48384523  T
Q  121 acataaagtcaaattgtttccatttaagctataagttattttctataaggtctcccaaagagtctcacaaatgattaagctagtagataacctcacttaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  48384522 acataaagtcaaattgtttccatttaagctataagttattttctataaggtctcccaaagagtctcacaaatgattaagctagtagataacctcaattta 48384423  T
Q  221 gttaatctaaacagactcttacaagcaa 248  Q
    ||||||||||||||||||||||||||||    
T  48384422 gttaatctaaacagactcttacaagcaa 48384395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 48397611 - 48397703
Alignment:
Q  115 aagataacataaagtcaaattgtttccatttaagctataagttattttctataaggtctcccaaagagtctcacaaatgattaagctagtagat 208  Q
    ||||||| |||||||||||||||||  |||||||||||||||| ||||| || || ||| ||||| | ||||||||||| ||| ||||||||||    
T  48397611 aagataaaataaagtcaaattgtttttatttaagctataagttgttttc-attagctcttccaaacaatctcacaaatgcttatgctagtagat 48397703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 14145869 - 14145925
Alignment:
Q  107 tataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||||||||| ||||||| ||||||||| | | || ||||||||||||||||    
T  14145869 tataacagaagataaaataaagttaaattgttttcgtatatgctataagttattttc 14145925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 48364991 - 48364936
Alignment:
Q  108 ataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    |||||| ||||||| ||||||||||||||||| |||||| || ||||||| |||||    
T  48364991 ataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttc 48364936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 27531 - 27589
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| |||||    
T  27531 tctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttc 27589  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 49517025 - 49517075
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataag 155  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||||||    
T  49517025 tctataacaaaagataaaataaagtcaaattgttttcatttaagctataag 49517075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 25006149 - 25006091
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||||| | ||| ||||||||||||||||| ||| ||||||||||||| |||||    
T  25006149 tctataacagacggtaaaataaagtcaaattgttttcatataagctataagttgttttc 25006091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 15360849 - 15360901
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagtt 157  Q
    ||||||||| ||||||| ||||||||||| ||||| ||| |||||||||||||    
T  15360849 tctataacaaaagataaaataaagtcaaactgttttcatataagctataagtt 15360901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 30371105 - 30371161
Alignment:
Q  107 tataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||| ||||||| ||||| ||||||||||| ||| ||||||||||||| |||||    
T  30371105 tataacaaaagataaaataaactcaaattgttttcatataagctataagttgttttc 30371161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 34179989 - 34179938
Alignment:
Q  103 aatctataacagaagataacataaagtcaaattgtttccatttaagctataa 154  Q
    ||||||||||| ||||||| |||||||||||||||||  || ||||||||||    
T  34179989 aatctataacaaaagataaaataaagtcaaattgttttaatctaagctataa 34179938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 44032114 - 44032055
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttct 164  Q
    ||||||||| ||| ||| ||||||||||||||||| ||| ||||||||||  ||||||||    
T  44032114 tctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactattttct 44032055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 27738295 - 27738237
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    |||| |||| ||||||| ||||||||||||||||| ||| |||||||||| || |||||    
T  27738295 tctacaacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttc 27738237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 49557096 - 49557154
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||| ||||||| ||||||| |||| || | ||||||||||||||||| |||||    
T  49557096 tctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttttc 49557154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 1879142 - 1879097
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagct 150  Q
    ||||||||||||||||| ||||||||||| ||||| ||| ||||||    
T  1879142 tctataacagaagataaaataaagtcaaaatgttttcatataagct 1879097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 7218171 - 7218131
Alignment:
Q  123 ataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  7218171 ataaagtcaaattgttttcatataagctataagttgttttc 7218131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 28467420 - 28467364
Alignment:
Q  107 tataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||| ||||||| ||||||||||||| ||| ||| ||||||| ||||| |||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttc 28467364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 30257648 - 30257696
Alignment:
Q  115 aagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||| ||||||||||| ||||||||| |||||| |||||| |||||    
T  30257648 aagataaaataaagtcaaactgtttccatataagctttaagttgttttc 30257696  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 34551077 - 34551134
Alignment:
Q  107 tataacagaagataacataaagtcaaattgtttccatttaagctataagttattttct 164  Q
    ||||||| |||||||||| |||||||||||||| |||||||| |||||||| ||||||    
T  34551077 tataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgttttct 34551134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 34770857 - 34770905
Alignment:
Q  115 aagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  34770857 aagataaaataaagtcaaattgttttcatttaagctataagttgttttc 34770905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 1664452 - 1664523
Alignment:
Q  165 ataaggtctcccaaagagtctcacaaatgattaagctagtagataacctcacttaagttaatctaaacagac 236  Q
    ||||| ||||||||| |||||||||| || ||| |||||||||||| ||||  |||||  ||||||||||||    
T  1664452 ataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaacagac 1664523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 42597356 - 42597414
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||| ||||||| ||||||| ||||||||| |||  |||||||||||| |||||    
T  42597356 tctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttc 42597414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 2093244 - 2093292
Alignment:
Q  115 aagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||| |||||||||||| |||| | ||||||||||||||| |||||    
T  2093244 aagataaaataaagtcaaatggttttcttttaagctataagttgttttc 2093292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 583886 - 583836
Alignment:
Q  107 tataacagaagataacataaagtcaaattgtttccatttaagctataagtt 157  Q
    ||||||||||||||| ||||||||||| ||||| ||| |||||||||||||    
T  583886 tataacagaagataaaataaagtcaaactgttttcatataagctataagtt 583836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 10303756 - 10303798
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaa 147  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||    
T  10303756 tctataacaaaagataaaataaagtcaaattgttttcatttaa 10303798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 14295461 - 14295511
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataag 155  Q
    ||||||||| ||||||| ||||||||||| ||||| ||| |||||||||||    
T  14295461 tctataacaaaagataaaataaagtcaaactgttttcatataagctataag 14295511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 35095898 - 35095862
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttcc 141  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  35095898 tctataacaaaagataaaataaagtcaaattgtttcc 35095862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 35135777 - 35135725
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagtt 157  Q
    ||||||||| ||||||| ||||||||||| | ||| ||| |||||||||||||    
T  35135777 tctataacaaaagataaaataaagtcaaactattttcatataagctataagtt 35135725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 39128583 - 39128627
Alignment:
Q  94 tataagccaaatctataacagaagataacataaagtcaaattgtt 138  Q
    ||||||| || ||||||||| ||||||| ||||||||||||||||    
T  39128583 tataagctaattctataacaaaagataaaataaagtcaaattgtt 39128627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 42907314 - 42907372
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    |||||||||||||| || ||||||| ||||||||| | ||||||||||||||| |||||    
T  42907314 tctataacagaagaaaaaataaagttaaattgttttcgtttaagctataagttgttttc 42907372  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 11513858 - 11513911
Alignment:
Q  110 aacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    |||| ||||||| ||||||||||||||||| ||| ||||||||||||| |||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttc 11513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 29935958 - 29936016
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    |||||||||  | |||| |||| |||||||||||||||| ||||||||||||| |||||    
T  29935958 tctataacaacaaataaaataacgtcaaattgtttccatgtaagctataagtttttttc 29936016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 37053549 - 37053607
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    |||||||||||| |||| ||||||||||| ||||| ||| |||| |||||||| |||||    
T  37053549 tctataacagaaaataaaataaagtcaaactgttttcatataagttataagtttttttc 37053607  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 33942115 - 33942163
Alignment:
Q  115 aagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||| ||||||||||| ||||| ||| ||||||||||||| |||||    
T  33942115 aagataaaataaagtcaaactgttttcatgtaagctataagttgttttc 33942163  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 35755599 - 35755559
Alignment:
Q  123 ataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  35755599 ataaagtcaaattgttttcatgtaagctataagttgttttc 35755559  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 39567858 - 39567945
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttctataaggtctcccaaaga-gtctcacaaat 192  Q
    ||||||||| ||||||| ||||||| |||||||||| |  ||||||||||| | ||||| ||||| | ||||||| | |||||||||||    
T  39567858 tctataacaaaagataaaataaagttaaattgtttcaagataagctataagctgttttc-ataagttttcccaaacaggtctcacaaat 39567945  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 43141836 - 43141876
Alignment:
Q  115 aagataacataaagtcaaattgtttccatttaagctataag 155  Q
    |||||||  |||||||||||||||||||| |||||||||||    
T  43141836 aagataaagtaaagtcaaattgtttccatataagctataag 43141876  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 8130129 - 8130178
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataa 154  Q
    ||||||||| ||||||||||||||||||||| ||| ||| ||||||||||    
T  8130129 tctataacaaaagataacataaagtcaaattattttcatataagctataa 8130178  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 4071837 - 4071889
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagtt 157  Q
    ||||||||| ||||||| ||||||||||||| ||| ||| |||||||||||||    
T  4071837 tctataacaaaagataaaataaagtcaaattattttcatataagctataagtt 4071889  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 927260 - 927306
Alignment:
Q  118 ataacataaagtcaaattgtttccatttaagctataagttattttct 164  Q
    |||| ||||||||||||||||||||| |||| |||||||| ||||||    
T  927260 ataaaataaagtcaaattgtttccatataagttataagttgttttct 927306  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 13949949 - 13949907
Alignment:
Q  115 aagataacataaagtcaaattgtttccatttaagctataagtt 157  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||    
T  13949949 aagataaaataaagtcaaattgttttcatataagctataagtt 13949907  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 49219094 - 49219152
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||| || |||| ||||||||||||| ||| ||| ||||||||||||| |||||    
T  49219094 tctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttc 49219152  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 54325152 - 54325094
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||| ||| ||||||| ||||||||||| ||||| ||| ||||||||||| |||||||    
T  54325152 tctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttc 54325094  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 10192241 - 10192297
Alignment:
Q  107 tataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||| ||||||  ||||||||||||||||| ||| |||| |||||||| |||||    
T  10192241 tataacaaaagatagaataaagtcaaattgttttcatataagttataagttgttttc 10192297  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 29374016 - 29373944
Alignment:
Q  91 atatataagccaaatctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    |||||||||| |  ||||||||||||||||| |||| |||||| ||| | ||| |||||||||| || |||||    
T  29374016 atatataagctatttctataacagaagataaaataatgtcaaaatgtattcatataagctataatttgttttc 29373944  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 1417221 - 1417277
Alignment:
Q  107 tataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||| ||||||| ||||||||||||||||| ||| ||||| ||||||| |||||    
T  1417221 tataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttc 1417277  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 35536062 - 35536117
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttatt 160  Q
    ||||||||| ||||||| ||||||||||||||||| ||| |||| |||||| ||||    
T  35536062 tctataacataagataaaataaagtcaaattgttttcatataagttataagctatt 35536117  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 27481409 - 27481351
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||| | ||||| |  |||||||| ||||||||| |||||||||||||||||||    
T  27481409 tctataacaaaggataaaacgaagtcaaactgtttccatataagctataagttattttc 27481351  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 49060495 - 49060553
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||| || |||| ||||||||||||| |||  || |||||||||||||||||||    
T  49060495 tctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttc 49060553  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 23918912 - 23918961
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataa 154  Q
    ||||| ||| ||||||| ||||||||||||||||| ||| ||||||||||    
T  23918912 tctattacaaaagataaaataaagtcaaattgttttcatataagctataa 23918961  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 9527219 - 9527147
Alignment:
Q  91 atatataagccaaatctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||| || | |||||||||| ||||||  ||||||||||| ||||| ||| ||| ||||||||| |||||    
T  9527219 atatatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttc 9527147  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 27548228 - 27548268
Alignment:
Q  115 aagataacataaagtcaaattgtttccatttaagctataag 155  Q
    ||||||| |||||||| |||||||| |||||||||||||||    
T  27548228 aagataaaataaagtctaattgttttcatttaagctataag 27548268  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 46056185 - 46056149
Alignment:
Q  54 ccatggttagataaacaacttaattaagcatttatca 90  Q
    ||||| || ||||||||||||||||||||||||||||    
T  46056185 ccatgtttggataaacaacttaattaagcatttatca 46056149  T

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Target: scaffold0199 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 6893 - 6964
Alignment:
Q  165 ataaggtctcccaaagagtctcacaaatgattaagctagtagataacctcacttaagttaatctaaacagac 236  Q
    ||||| ||||||||| |||||||||| || ||| |||||||||||| ||||  |||||  ||||||||||||    
T  6893 ataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaacagac 6964  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 5550098 - 5550137
Alignment:
Q  116 agataacataaagtcaaattgtttccatttaagctataag 155  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  5550098 agataacataaagtcaaattgttttcatataagctataag 5550137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 22742323 - 22742378
Alignment:
Q  107 tataacagaagataacataaagtcaaattgtttccatttaagctataagttatttt 162  Q
    ||||||| | ||||| ||||||||||||||||| ||| ||||||||||| ||||||    
T  22742323 tataacaaaggataaaataaagtcaaattgttttcatataagctataagctatttt 22742378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 4006669 - 4006727
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagttattttc 163  Q
    ||||||||| | ||||| |||||||||||||||||  || ||||||||||||| |||||    
T  4006669 tctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttc 4006727  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 29269851 - 29269885
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgttt 139  Q
    ||||||||||||||||| |||||||||||||||||    
T  29269851 tctataacagaagataaaataaagtcaaattgttt 29269885  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 281962 - 281913
Alignment:
Q  106 ctataacagaagataacataaagtcaaattgtttccatttaagctataag 155  Q
    |||||||| ||||||| |||||||||| |||||| ||| |||||||||||    
T  281962 ctataacaaaagataaaataaagtcaacttgttttcatataagctataag 281913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 29274344 - 29274295
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataa 154  Q
    |||||| || ||||||| ||||||||||||||||| ||| ||||||||||    
T  29274344 tctatagcaaaagataaaataaagtcaaattgttttcatataagctataa 29274295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 24836314 - 24836262
Alignment:
Q  105 tctataacagaagataacataaagtcaaattgtttccatttaagctataagtt 157  Q
    ||||||||| ||||||| ||||||||||||||||| | | ||| |||||||||    
T  24836314 tctataacaaaagataaaataaagtcaaattgttttcgtataaactataagtt 24836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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