View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_63 (Length: 248)

Name: NF9782A_low_63
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_63
NF9782A_low_63
[»] chr1 (9 HSPs)
chr1 (1-248)||(7386188-7386435)
chr1 (164-248)||(19322764-19322848)
chr1 (164-228)||(7900225-7900289)
chr1 (164-228)||(19993340-19993404)
chr1 (164-235)||(37457693-37457764)
chr1 (164-228)||(23570971-23571035)
chr1 (128-164)||(23571072-23571108)
chr1 (164-235)||(43496467-43496538)
chr1 (104-159)||(51613226-51613282)
[»] chr5 (10 HSPs)
chr5 (164-248)||(4925136-4925220)
chr5 (1-102)||(5173343-5173444)
chr5 (164-228)||(39060266-39060330)
chr5 (102-166)||(4924777-4924841)
chr5 (104-164)||(39060169-39060229)
chr5 (166-228)||(35205249-35205311)
chr5 (166-228)||(35211840-35211902)
chr5 (104-164)||(34769634-34769694)
chr5 (115-164)||(729137-729186)
chr5 (102-146)||(38744519-38744563)
[»] scaffold0015 (2 HSPs)
scaffold0015 (164-228)||(56552-56616)
scaffold0015 (104-164)||(56653-56713)
[»] chr8 (3 HSPs)
chr8 (164-228)||(40278929-40278993)
chr8 (164-228)||(11425556-11425619)
chr8 (102-164)||(18227065-18227127)
[»] chr4 (9 HSPs)
chr4 (164-228)||(23560084-23560148)
chr4 (164-228)||(48263063-48263127)
chr4 (164-233)||(779964-780033)
chr4 (164-228)||(4974584-4974648)
chr4 (170-235)||(52326966-52327030)
chr4 (164-228)||(5415246-5415310)
chr4 (102-146)||(19485866-19485910)
chr4 (102-164)||(779865-779927)
chr4 (164-234)||(41377340-41377410)
[»] chr3 (10 HSPs)
chr3 (164-228)||(11467270-11467334)
chr3 (164-228)||(52313953-52314017)
chr3 (164-228)||(53464363-53464427)
chr3 (95-164)||(7352603-7352672)
chr3 (164-208)||(1995646-1995690)
chr3 (164-228)||(35424202-35424266)
chr3 (102-164)||(36177279-36177341)
chr3 (128-164)||(15877754-15877790)
chr3 (129-166)||(28885624-28885661)
chr3 (164-216)||(15877827-15877879)
[»] chr2 (9 HSPs)
chr2 (168-228)||(33386742-33386802)
chr2 (115-164)||(18565805-18565854)
chr2 (164-248)||(39375652-39375736)
chr2 (104-159)||(32914529-32914584)
chr2 (170-235)||(32914416-32914480)
chr2 (100-164)||(39375773-39375837)
chr2 (102-164)||(14657577-14657638)
chr2 (102-166)||(33386644-33386708)
chr2 (104-164)||(37258127-37258187)
[»] chr7 (3 HSPs)
chr7 (173-235)||(32485527-32485589)
chr7 (164-209)||(44396371-44396416)
chr7 (102-159)||(48252958-48253015)
[»] scaffold0110 (2 HSPs)
scaffold0110 (102-159)||(13771-13828)
scaffold0110 (102-159)||(21508-21565)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 7386188 - 7386435
Alignment:
Q  1 tcaaaacagctgtagagaagggaatgcactatgtggagtttgaaactgattgcaaacctgtagcagatgcactatccctgcctacagcaccccatagtga 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7386188 tcaaaacagctatagagaagggaatgcactatgtggagtttgaaactgactgcaaacctgtagcagatgcactatccctgcctacagcaccccataatga 7386287  T
Q  101 attagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacattactacattttctatatatccatatcactcctttaaaa 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  7386288 attagagcaaccacattcatgtcatttatatgggtggtataaatggatcccacataatatattactacattttctatatatccatatcactcctttaaaa 7386387  T
Q  201 ctctaaaataggtcccacttatcttacattatactattaattaaaaga 248  Q
     | ||||||||||| ||||||||||||| |||||||||||||||||||    
T  7386388 ttttaaaataggtctcacttatcttacaatatactattaattaaaaga 7386435  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 19322848 - 19322764
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattatactattaattaaaaga 248  Q
    |||||||||| || ||||||||| |||| ||  ||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  19322848 actacattttttaaatatccataccacttctccaaaactctaaaatagatcccacttatcttacaatatactattaattaaaaga 19322764  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 7900225 - 7900289
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  7900225 actacattttctaaatatccataccactcctctaaaactctaaaatgggtcccacttatcttaca 7900289  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 19993404 - 19993340
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    |||| |||||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  19993404 actatattttctaaatatccataccactcctctaaaactctaaaataggtcacacttatcttaca 19993340  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 37457693 - 37457764
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattatact 235  Q
    |||| |||||||| |||| |||| ||||| |  |||||| ||||||||||||||||||||||||| ||||||    
T  37457693 actatattttctaaatatacataccactcttccaaaactttaaaataggtcccacttatcttacaatatact 37457764  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 23571035 - 23570971
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    |||| ||||| || ||||||||| |||||||  |||||||||||||  |||||||||||||||||    
T  23571035 actatattttttaaatatccataccactcctccaaaactctaaaatgagtcccacttatcttaca 23570971  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 23571108 - 23571072
Alignment:
Q  128 atatgggtggtataaatgggtcccatataatacatta 164  Q
    ||||||||||||||||||||||||| |||||||||||    
T  23571108 atatgggtggtataaatgggtcccacataatacatta 23571072  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 43496467 - 43496538
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattatact 235  Q
    |||||||||| || ||||||||| ||| | ||  |||||||||||| ||||||||| |||| ||||||||||    
T  43496467 actacattttttaaatatccataccacccattataaactctaaaatgggtcccactaatctcacattatact 43496538  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 51613226 - 51613282
Alignment:
Q  104 agagcaaccacattcatgtca-tctatatgggtggtataaatgggtcccatataata 159  Q
    |||||| | |||||||||||| |||||||| ||||||||||||| ||||| ||||||    
T  51613226 agagcatctacattcatgtcactctatatgagtggtataaatggatcccacataata 51613282  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 4925136 - 4925220
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattatactattaattaaaaga 248  Q
    |||||||||| || ||||||||||||||| |  |||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  4925136 actacattttttaaatatccatatcactcttccaaaactctaaaataggtctcacttatcttacaatatactattaattaaaaga 4925220  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5173343 - 5173444
Alignment:
Q  1 tcaaaacagctgtagagaagggaatgcactatgtggagtttgaaactgattgcaaacctgtagcagatgcactatccctgcctacagcaccccatagtga 100  Q
    ||||||||||| ||||||||||    | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||| | ||||||    
T  5173343 tcaaaacagctatagagaagggccatcgctatgtggagtttgaaactgactgcaaacctgtagtagatgcactatccctgcctagaacacctcgtagtga 5173442  T
Q  101 at 102  Q
    ||    
T  5173443 at 5173444  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 39060266 - 39060330
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    |||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  39060266 actatattttctaaatatccatatcactcctctaaaactttaaaataggtcccacttatcttaca 39060330  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 4924777 - 4924841
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacattact 166  Q
    ||||||||||||||| |||| || | |||||||||||||||||| |||||| |||||||||||||    
T  4924777 ttagagcaaccacatccatgccacccatatgggtggtataaatgagtcccacataatacattact 4924841  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 39060169 - 39060229
Alignment:
Q  104 agagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    |||||| |||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  39060169 agagcacccacatacatatcacctatatgggtggtataaatgggtcccacataatacatta 39060229  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 35205249 - 35205311
Alignment:
Q  166 tacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||| ||||||||| ||||||  |||||||||||||| | ||||||||||||||||    
T  35205249 tacattttctaaatatccataccactcccctaaaactctaaaatggctcccacttatcttaca 35205311  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 35211902 - 35211840
Alignment:
Q  166 tacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||| ||||||||| ||||||  |||||||||||||| | ||||||||||||||||    
T  35211902 tacattttctaaatatccataccactcccctaaaactctaaaatggctcccacttatcttaca 35211840  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 34769694 - 34769634
Alignment:
Q  104 agagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    |||||| |||||| |||| |||| || ||||||||||||| |||||||| |||||||||||    
T  34769694 agagcatccacatccatgccatccatttgggtggtataaacgggtcccacataatacatta 34769634  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 729137 - 729186
Alignment:
Q  115 attcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    ||||||| |||| |||||||||| |||||| | |||||||||||||||||    
T  729137 attcatgccatccatatgggtggcataaatagatcccatataatacatta 729186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 38744519 - 38744563
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgg 146  Q
    |||||||| | ||||||||||||||||||| | ||||||||||||    
T  38744519 ttagagcacctacattcatgtcatctatatagatggtataaatgg 38744563  T

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Target: scaffold0015 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 56616 - 56552
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||| || ||||||||||||||||||    
T  56616 actacattttctaaatatccataccactcctctaaaactctaatatgggtcccacttatcttaca 56552  T

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Target: scaffold0015; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 56713 - 56653
Alignment:
Q  104 agagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    ||||||||||||| |||| |||| | |||| ||||||||||||| |||| |||||| ||||    
T  56713 agagcaaccacatccatgccatccaaatggatggtataaatgggacccacataatatatta 56653  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 40278993 - 40278929
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| ||||||||| ||||||  |||||||||||||| ||||||||||||||||||    
T  40278993 actacattttctaaatatccataccactccactaaaactctaaaatgggtcccacttatcttaca 40278929  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 11425556 - 11425619
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| |||| |||| ||||||| |||||||||||||| |||||  |||||||||||    
T  11425556 actacattttctaaatattcata-cactcctctaaaactctaaaatgggtcctgcttatcttaca 11425619  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 18227127 - 18227065
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    |||||||| |||||| |||| || | || ||||||||||||| |||||||| |||||||||||    
T  18227127 ttagagcatccacatccatgccacccatttgggtggtataaacgggtcccacataatacatta 18227065  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 23560084 - 23560148
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| ||||||||  ||||||| |||||||||||||| ||||||||||||||||||    
T  23560084 actacattttctaaatatccatgccactcctctaaaactctaaaatgggtcccacttatcttaca 23560148  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 48263063 - 48263127
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| |||| |||| ||||||| |||||||||||||| |||| |||||||||||||    
T  48263063 actacattttctaaatattcataccactcctctaaaactctaaaatgggtctcacttatcttaca 48263127  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 779964 - 780033
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattata 233  Q
    |||| |||||||| ||||||||| |||||||  |||| |||||||| |||||||||||||||||| ||||    
T  779964 actatattttctaaatatccataccactcctccaaaattctaaaatgggtcccacttatcttacaatata 780033  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 4974648 - 4974584
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    |||| |||||||| |||| |||| |||||||  |||||||||||||||||| |||||||||||||    
T  4974648 actatattttctaaatattcataccactcctcaaaaactctaaaataggtctcacttatcttaca 4974584  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 52327030 - 52326966
Alignment:
Q  170 ttttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattatact 235  Q
    ||||||| ||||||||| ||||| |  ||||||||||||||||||||||| |||||||| ||||||    
T  52327030 ttttctaaatatccataccactc-tccaaaactctaaaataggtcccactaatcttacaatatact 52326966  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 5415246 - 5415310
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| |||| |||| ||||||| |||||||||||||| ||||  | ||||||||||    
T  5415246 actacattttctaaatattcataccactcctctaaaactctaaaatgggtcttatttatcttaca 5415310  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 19485910 - 19485866
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgg 146  Q
    |||||||| |||||| ||||||||| |||||||||||||||||||    
T  19485910 ttagagcacccacatccatgtcatccatatgggtggtataaatgg 19485866  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 779865 - 779927
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    |||||||| |||||| |||  || | |||||||||||||||||||||| || |||||||||||    
T  779865 ttagagcacccacatccataccacccatatgggtggtataaatgggtctcacataatacatta 779927  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 41377410 - 41377340
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattatac 234  Q
    |||||||||| || |||| ||||  |||| ||||||||||| |||| ||||||||| |||||||| |||||    
T  41377410 actacattttttaaatattcatactactcttttaaaactcttaaatgggtcccactaatcttacaatatac 41377340  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 11467270 - 11467334
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||||| |||| |||||||||||||    
T  11467270 actacattttctaaatatccatatcactcctctaaaattctaaaatgggtctcacttatcttaca 11467334  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 52313953 - 52314017
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| ||||||||| ||||||  |||||||||||||| ||||||||||||||||||    
T  52313953 actacattttctaaatatccataccactcccctaaaactctaaaatgggtcccacttatcttaca 52314017  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 53464363 - 53464427
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| ||||||||| ||||||  |||||||||||||| ||||||||||||||||||    
T  53464363 actacattttctaaatatccataccactcccctaaaactctaaaatgggtcccacttatcttaca 53464427  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 7352672 - 7352603
Alignment:
Q  95 tagtgaattagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    |||||| |||||||| |||||| ||||||| | || ||||||||||||| |||||||| |||||||||||    
T  7352672 tagtgacttagagcatccacatccatgtcacccatttgggtggtataaacgggtcccacataatacatta 7352603  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 1995646 - 1995690
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaa 208  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||    
T  1995646 actacattttctaaatatccataccactcctttaaaactctaaaa 1995690  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 35424202 - 35424266
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||||||| ||||||||| ||| | | |||||||||||||| |||| |||||||||||||    
T  35424202 actacattttctaaatatccataccacccttctaaaactctaaaatgggtctcacttatcttaca 35424266  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 36177341 - 36177279
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    |||| ||| ||||||||||| || |||||||| |||||||||||||||||| |||||| ||||    
T  36177341 ttagggcatccacattcatgccacctatatggatggtataaatgggtcccacataatagatta 36177279  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 15877754 - 15877790
Alignment:
Q  128 atatgggtggtataaatgggtcccatataatacatta 164  Q
    ||||||||||||||||||||||||| |||||||||||    
T  15877754 atatgggtggtataaatgggtcccacataatacatta 15877790  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 28885624 - 28885661
Alignment:
Q  129 tatgggtggtataaatgggtcccatataatacattact 166  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  28885624 tatggatggtataaatggatcccatataatacattact 28885661  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 15877827 - 15877879
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtccc 216  Q
    |||| |||||||| ||||||||| |||||||  ||||||||||||| ||||||    
T  15877827 actatattttctaaatatccataccactcctccaaaactctaaaatgggtccc 15877879  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 33386742 - 33386802
Alignment:
Q  168 cattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttaca 228  Q
    ||||||||| |||| |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  33386742 cattttctaaatattcataccactcctctaaaactctaaaatgggtcccacttatcttaca 33386802  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 18565854 - 18565805
Alignment:
Q  115 attcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  18565854 attcatgtcatccatatgagtggtataaatgggtctcatataatacatta 18565805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 39375736 - 39375652
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattatactattaattaaaaga 248  Q
    |||| ||||| || ||||||||| || ||||  |||| | ||||| ||||||||||||||||||| |||| ||||||||||||||    
T  39375736 actatattttttaaatatccataccattcctccaaaattttaaaacaggtcccacttatcttacaatatattattaattaaaaga 39375652  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 32914584 - 32914529
Alignment:
Q  104 agagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataata 159  Q
    |||||| |||||| ||||||||| ||||| || |||||||||||||||||||||||    
T  32914584 agagcacccacatccatgtcatccatatgagtagtataaatgggtcccatataata 32914529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 32914480 - 32914416
Alignment:
Q  170 ttttctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattatact 235  Q
    ||||||| ||||||||| ||||| |  ||||||||||||||||||||||| |||||||| ||||||    
T  32914480 ttttctaaatatccataccactc-tcaaaaactctaaaataggtcccactaatcttacaatatact 32914416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 39375837 - 39375773
Alignment:
Q  100 aattagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    ||||||||||||||||| |||| |||| |||||| || |||||||| ||| ||||||||| ||||    
T  39375837 aattagagcaaccacatacatgccatccatatggatgatataaatgagtctcatataatatatta 39375773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 14657638 - 14657577
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    |||||||| ||||||  ||| |||||||||||||||||||||| |||| || |||||||||||    
T  14657638 ttagagcatccacatctatggcatctatatgggtggtataaat-ggtcacacataatacatta 14657577  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 33386644 - 33386708
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacattact 166  Q
    ||||||||||||||| |||| || | | ||| |||||||||||||| |||| |||||| ||||||    
T  33386644 ttagagcaaccacatccatgccacccaaatgagtggtataaatgggacccacataatatattact 33386708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 37258127 - 37258187
Alignment:
Q  104 agagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataatacatta 164  Q
    |||||| |||||| |||||||   |||||| ||||||||||||||| ||||||||| ||||    
T  37258127 agagcatccacatccatgtcactcatatggatggtataaatgggtctcatataatatatta 37258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 32485527 - 32485589
Alignment:
Q  173 tctatatatccatatcactcctttaaaactctaaaataggtcccacttatcttacattatact 235  Q
    |||| ||||||||| |||||||  ||||||||||||| ||||||||||||| |||| ||||||    
T  32485527 tctaaatatccataccactcctccaaaactctaaaatgggtcccacttatcgtacactatact 32485589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 44396416 - 44396371
Alignment:
Q  164 actacattttctatatatccatatcactcctttaaaactctaaaat 209  Q
    ||||||||||||| |||| |||| ||||||| ||||||||||||||    
T  44396416 actacattttctaaatattcataccactcctctaaaactctaaaat 44396371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 48253015 - 48252958
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataata 159  Q
    |||||||| |||||| |||| || | ||||| || |||||||||||||||||||||||    
T  48253015 ttagagcacccacatccatgccacccatatgagtagtataaatgggtcccatataata 48252958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 13771 - 13828
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataata 159  Q
    |||||||| |||||| |||| || | || |||||||||||||||||||||| ||||||    
T  13771 ttagagcatccacatccatgccacccatttgggtggtataaatgggtcccacataata 13828  T

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Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 21508 - 21565
Alignment:
Q  102 ttagagcaaccacattcatgtcatctatatgggtggtataaatgggtcccatataata 159  Q
    |||||||| |||||| |||| || | || |||||||||||||||||||||| ||||||    
T  21508 ttagagcatccacatccatgccacccatttgggtggtataaatgggtcccacataata 21565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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