View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_67 (Length: 246)

Name: NF9782A_low_67
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_67
NF9782A_low_67
[»] chr4 (5 HSPs)
chr4 (15-238)||(24666621-24666844)
chr4 (8-238)||(34941551-34941782)
chr4 (7-238)||(18363426-18363653)
chr4 (7-238)||(36599275-36599502)
chr4 (116-191)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (119-238)||(26240615-26240735)
chr1 (8-99)||(26240779-26240870)
[»] chr3 (2 HSPs)
chr3 (7-191)||(53242714-53242900)
chr3 (63-214)||(43479315-43479456)
[»] chr2 (2 HSPs)
chr2 (15-178)||(19697413-19697568)
chr2 (15-69)||(13265597-13265651)
[»] chr8 (1 HSPs)
chr8 (24-128)||(32566462-32566563)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 24666844 - 24666621
Alignment:
Q  15 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 114  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  24666844 ataccgtttgattgaatcaatggttgagatttattgaaaataagattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat 24666745  T
Q  115 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 214  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24666744 ctttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 24666645  T
Q  215 accaatttcttggtgttgataact 238  Q
    ||||||||||||||||||||||||    
T  24666644 accaatttcttggtgttgataact 24666621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 34941551 - 34941782
Alignment:
Q  8 gaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatt 107  Q
    |||||| |||||||||||||||||||| |||| ||||||||| |||||||| |||||||||| |||||||||||||||  |||||||||||| ||||||     
T  34941551 gaagaaaataccgtttgattgaatcaacggttgagatttattgaaaataaagttgagaacatctagacattttaacatacaatcttgtccctgttatatc 34941650  T
Q  108 tcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagt 207  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34941651 tcttcatcctcttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaaat 34941750  T
Q  208 gacaggaa-ccaatttcttggtgttgataact 238  Q
    |||||||| |||||||||||||||||||||||    
T  34941751 gacaggaacccaatttcttggtgttgataact 34941782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 18363653 - 18363426
Alignment:
Q  7 cgaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatat 106  Q
    ||||||| ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | |||||||||||||||||    
T  18363653 cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatat 18363554  T
Q  107 ttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag 206  Q
    ||||||||||||  ||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18363553 ttcttcatcctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag 18363458  T
Q  207 tgacaggaaccaatttcttggtgttgataact 238  Q
    ||||| ||||||||||||||||||||||||||    
T  18363457 tgacatgaaccaatttcttggtgttgataact 18363426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 36599275 - 36599502
Alignment:
Q  7 cgaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatat 106  Q
    ||||||| ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | |||||||||||||||||    
T  36599275 cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatat 36599374  T
Q  107 ttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag 206  Q
    ||||||||||||  ||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36599375 ttcttcatcctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag 36599470  T
Q  207 tgacaggaaccaatttcttggtgttgataact 238  Q
    ||||| ||||||||||||||||||||||||||    
T  36599471 tgacatgaaccaatttcttggtgttgataact 36599502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 8752390 - 8752465
Alignment:
Q  116 cttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa 191  Q
    ||||||||||||||||||||  || |||| | | | ||||||| ||||||||||||||| ||| ||||||||||||    
T  8752390 cttttcaactcctctgaaattagtgaatccataggttgcttgctgaaaacatctacatcaattcgaaaatgaaaaa 8752465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 26240735 - 26240615
Alignment:
Q  119 ttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacaggaa-cc 217  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  26240735 ttcaactcccttgaaatatgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagaaaccc 26240636  T
Q  218 aatttcttggtgttgataact 238  Q
    |||||||||||||||||||||    
T  26240635 aatttcttggtgttgataact 26240615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 26240870 - 26240779
Alignment:
Q  8 gaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccct 99  Q
    |||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  ||||||||||||    
T  26240870 gaagaaaataccgtttgattgaatcaatggttgagatttattgaaaataatattgagaacatctagacattttaacatacaatcttgtccct 26240779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 53242714 - 53242900
Alignment:
Q  7 cgaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaatt-gagaacatatagacattttaacattaaatcttgt-ccctattat 104  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| || |  ||| |||| |||||||||    
T  53242714 cgaagaaaataccatttgattgaatcaatggttaagatttattgaaaataaaatttgagaacatctagacattttcacttacaattttgttccctattat 53242813  T
Q  105 atttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa 191  Q
    |||| |||||||| ||||||||   | ||||||||||||||| ||||| | ||||||||||||||| ||||||| | ||||||||||    
T  53242814 atttgttcatcctcttcaactctcttaaaatctgtaaatctaaaagatacatgcagaaaacatctatatccattcggaaatgaaaaa 53242900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 43479456 - 43479315
Alignment:
Q  63 agaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaa 162  Q
    ||||||| |||||||||| ||||  ||| |||| ||||||||||||||||||| | |||||||| |           |||||||||||||||||||||||    
T  43479456 agaacatctagacattttcacatacaatattgttcctattatatttcttcatcttattcaactctt-----------aaatctagaagatgcttgcagaa 43479368  T
Q  163 aacatctacatccatttg-aaaatgaaaaaccagatatgggaaagtgacagga 214  Q
    |||||||||||||||| | ||||||||||| |||| | || ||||||| ||||    
T  43479367 aacatctacatccattcgaaaaatgaaaaaacagagacggaaaagtgatagga 43479315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 19697413 - 19697568
Alignment:
Q  15 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 114  Q
    |||| ||||||||||||||||| || |||||| || |||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  19697413 atactgtttgattgaatcaatgtttgagattttttgaaaa-aaaattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat 19697511  T
Q  115 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatt 178  Q
    | ||||||||||| || |       |||| |||||||||||||| |||||||||||||||||||    
T  19697512 cattttcaactccactaa-------aaatttagaagatgcttgcggaaaacatctacatccatt 19697568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 13265597 - 13265651
Alignment:
Q  15 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacat 69  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||| |||||||||    
T  13265597 ataccgttggattaaatcaatggtttagaattattaaaaataaaaatgagaacat 13265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 32566563 - 32566462
Alignment:
Q  24 gattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaa 123  Q
    |||||| ||||||||  ||||||||| ||||  ||||||||||||| || ||||||| ||||  |||||||||||||||||||||| ||||| | |||||    
T  32566563 gattgattcaatggtcaagatttattgaaaa--aaattgagaacatctaaacattttcacatacaatcttgtccctattatatttc-tcatcttattcaa 32566467  T
Q  124 ctcct 128  Q
    |||||    
T  32566466 ctcct 32566462  T

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