View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_68 (Length: 245)

Name: NF9782A_low_68
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_68
NF9782A_low_68
[»] chr3 (3 HSPs)
chr3 (15-245)||(48384119-48384349)
chr3 (21-245)||(48397792-48398016)
chr3 (21-245)||(48364512-48364736)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 48384119 - 48384349
Alignment:
Q  15 gacatcattgatatggcaaagcttcacaagatgaagcaagggaaagtttcctcgtggactatgaagattttggtagatgcagtgatgaattcaaggctgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48384119 gacatcattgatatggcaaagcttcacaagatgaagcaagggaaagtttcctcgtggactatgaagattttggtagatgcagtgatgaattcaaggctgt 48384218  T
Q  115 ccacaatctctaattcactggatgaaagtttttatgatgtagaaaatgaaccgaatgataaagaaattactaatgagatggaagcaactgctgctgccta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48384219 ccacaatctctaattcactggatgaaagtttttatgatgtagaaaatgaaccgaatgataaagaaattactaatgagatggaagcaactgctgctgccta 48384318  T
Q  215 ttacgttttcaggaatgttgctgcttcccct 245  Q
    |||||||||||||||||||||||||||||||    
T  48384319 ttacgttttcaggaatgttgctgcttcccct 48384349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 48398016 - 48397792
Alignment:
Q  21 attgatatggcaaagcttcacaagatgaagcaagggaaagtttcctcgtggactatgaagattttggtagatgcagtgatgaattcaaggctgtccacaa 120  Q
    |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48398016 attgatatggcaaagcttcacaagatgaagcaagagaaagtttcttcatggactatgaagattttggtagatgcagtgatgaactcaaggctgtccacaa 48397917  T
Q  121 tctctaattcactggatgaaagtttttatgatgtagaaaatgaaccgaatgataaagaaattactaatgagatggaagcaactgctgctgcctattacgt 220  Q
    ||||||| || || |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48397916 tctctaactctctagatgaaagtttttatgatgtagaaaacgaacagaatgataaagaaattactaatgagatggaagcaactgctgctgcctattacgt 48397817  T
Q  221 tttcaggaatgttgctgcttcccct 245  Q
    |||||||||||||||||||||||||    
T  48397816 tttcaggaatgttgctgcttcccct 48397792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 48364512 - 48364736
Alignment:
Q  21 attgatatggcaaagcttcacaagatgaagcaagggaaagtttcctcgtggactatgaagattttggtagatgcagtgatgaattcaaggctgtccacaa 120  Q
    |||||||||||| |||||||||| |||||||||| |||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  48364512 attgatatggcacagcttcacaacatgaagcaagagaaagtctccgcgtggaccatgaagattttggtagacgcagtgatgaattcaaggctgtccacaa 48364611  T
Q  121 tctctaattcactggatgaaagtttttatgatgtagaaaatgaaccgaatgataaagaaattactaatgagatggaagcaactgctgctgcctattacgt 220  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48364612 tctctaattcacttgatgaaagtttttatgatgtaaaaaatgaacggactggtaaagaaattactaatgagatggaagcaactgctgctgcctattatgt 48364711  T
Q  221 tttcaggaatgttgctgcttcccct 245  Q
    ||||| |||||||||||||||||||    
T  48364712 tttcaagaatgttgctgcttcccct 48364736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University