View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_7 (Length: 469)
Name: NF9782A_low_7
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 24 - 452
Target Start/End: Complemental strand, 45099455 - 45099027
Alignment:
| Q |
24 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
123 |
Q |
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| T |
45099455 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
45099356 |
T |
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| Q |
124 |
aatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
223 |
Q |
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| T |
45099355 |
aatgtaggaggtatgaaaataactccttttaatgacaccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
45099256 |
T |
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| Q |
224 |
cagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgactgctcaacagatgaatagggaaaa |
323 |
Q |
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| T |
45099255 |
cagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcgcctgaaaatgtttacatgactgctcaacagatgaatagggaaaa |
45099156 |
T |
|
| Q |
324 |
ctcaagtttagcttcaaggtttaatataacatggaattttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtgatattgttagt |
423 |
Q |
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| T |
45099155 |
ctcaagtttagcttcaaggtttaatataacatggaattttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtgatattgttagt |
45099056 |
T |
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| Q |
424 |
acttcgctcaacttgctttactttgatgt |
452 |
Q |
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| T |
45099055 |
acttcgctcaacttgctttactttgatgt |
45099027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 100 - 452
Target Start/End: Original strand, 17348638 - 17348993
Alignment:
| Q |
100 |
gttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttgg |
199 |
Q |
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| T |
17348638 |
gttttagaaactattcataggattaatgttggaggtgaaaaattaactccttttaatgataccctttggagaacatggattcctgataaggattttctgg |
17348737 |
T |
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| Q |
200 |
tttttaaggaagcagctaaacatgcagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgac |
299 |
Q |
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| T |
17348738 |
tttttaaggatgcagctaaggctgtagtgagcactcacacaccagattatcagaaagggggcgcggctagagagatcgcgccggatagtgtttatatgac |
17348837 |
T |
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| Q |
300 |
tgctcaacagatgaataggg---aaaactcaagtttagcttcaaggtttaatataacatggaattttcctgtggctcgtgatggcgtttcacatttgatt |
396 |
Q |
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| T |
17348838 |
tgctcaggagatgaatagggatcataattccattttagcttcacaattcaacataacatggaatttttcagtggattctattggtgttcgacatcttgtt |
17348937 |
T |
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| Q |
397 |
cggttgcatttttgtgatattgttagtacttcgctcaacttgctttactttgatgt |
452 |
Q |
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| T |
17348938 |
cggttgcatttctgcgatattgttagtccttctcttaatttgttatactttgatgt |
17348993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 17363885 - 17363945
Alignment:
| Q |
99 |
ggttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgat |
159 |
Q |
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| T |
17363885 |
ggttttagaaactattcataggattaacgttgatggtttgaaaataactccctttaatgat |
17363945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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