View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_70 (Length: 245)
Name: NF9782A_low_70
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_70 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 12844365 - 12844587
Alignment:
| Q |
23 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12844365 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
12844464 |
T |
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| Q |
123 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
222 |
Q |
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| T |
12844465 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
12844564 |
T |
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| Q |
223 |
aaaagtggtgatgagcatgttga |
245 |
Q |
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||||||||||||||||||||||| |
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| T |
12844565 |
aaaagtggtgatgagcatgttga |
12844587 |
T |
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Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 25098609 - 25098824
Alignment:
| Q |
23 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25098609 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
25098708 |
T |
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| Q |
123 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
222 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25098709 |
aatccaaacaaactgaagaaaatgaagtccaagatgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
25098808 |
T |
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| Q |
223 |
aaaagtggtgatgagc |
238 |
Q |
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| T |
25098809 |
aaaagtggtaatgagc |
25098824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 50438538 - 50438753
Alignment:
| Q |
23 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50438538 |
gacattacaatggaggtagtggaagattcctatgatagtgtttcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
50438637 |
T |
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| Q |
123 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50438638 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
50438737 |
T |
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| Q |
223 |
aaaagtggtgatgagc |
238 |
Q |
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| T |
50438738 |
aaaagtggtaatgagc |
50438753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 27442272 - 27442068
Alignment:
| Q |
23 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442272 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
27442173 |
T |
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| Q |
123 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442172 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
27442073 |
T |
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| Q |
223 |
aaaag |
227 |
Q |
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||||| |
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| T |
27442072 |
aaaag |
27442068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 45089 - 45293
Alignment:
| Q |
23 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45089 |
gacattacaatggaggtagtggaagattcctatgatagtgttacatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
45188 |
T |
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| Q |
123 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45189 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaa |
45288 |
T |
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| Q |
223 |
aaaag |
227 |
Q |
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||||| |
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| T |
45289 |
aaaag |
45293 |
T |
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