View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_8 (Length: 456)

Name: NF9782A_low_8
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_8
NF9782A_low_8
[»] chr4 (5 HSPs)
chr4 (207-406)||(29723791-29723990)
chr4 (4-158)||(29723963-29724111)
chr4 (302-387)||(3025103-3025188)
chr4 (259-307)||(29723710-29723758)
chr4 (129-169)||(3025357-3025397)
[»] chr5 (9 HSPs)
chr5 (41-189)||(37129546-37129697)
chr5 (118-178)||(37136782-37136842)
chr5 (14-159)||(35145021-35145169)
chr5 (8-127)||(37143799-37143918)
chr5 (127-190)||(37162378-37162441)
chr5 (129-169)||(38745419-38745459)
chr5 (308-361)||(38745617-38745670)
chr5 (41-128)||(37162277-37162364)
chr5 (127-175)||(37143933-37143981)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 207 - 406
Target Start/End: Complemental strand, 29723990 - 29723791
Alignment:
Q  207 gttgcatagagaaggagacatgctctccatgatgccttatgttgcatcagcgacagttccacaacagttgagattccctgacctccaaggttcatttgat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29723990 gttgcatagagaaggagacatgctctccatgatgccttatgttgcatcagcgacagatccacaacagttgagattccctgacctccaaggttcatttgat 29723891  T
Q  307 ggagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagtatttttccagatatttttggttctcttggaagtcaagatcatttg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29723890 ggagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagtatttttccagatatttttggttctcttggaagtcaagatcatttg 29723791  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 29724111 - 29723963
Alignment:
Q  4 agcaaagattaagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtgga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29724111 agcaaagattaagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtgga 29724012  T
Q  104 gctatagcttatgcaaaacatgttggttgcatagagaaggagagacatgctctcc 158  Q
    |||||||||||||| ||||||    ||||||||||||||  ||||||||||||||    
T  29724011 gctatagcttatgccaaacat----gttgcatagagaag--gagacatgctctcc 29723963  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 3025188 - 3025103
Alignment:
Q  302 ttgatggagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagtatttttccagatatttttggttctct 387  Q
    ||||| |||||||||| |||||||||| ||||||||||||||| || |||| ||||||||  ||| |||||  | |||||||||||    
T  3025188 ttgatcgagttgcggcatttaaagtatttgaacctcagttggaatctgttttcaaacagttatttcccagaattatttggttctct 3025103  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 29723758 - 29723710
Alignment:
Q  259 acagttccacaacagttgagattccctgacctccaaggttcatttgatg 307  Q
    |||| ||||||| |||||||| ||| |||||||||||||||||||||||    
T  29723758 acagctccacaatagttgagactccttgacctccaaggttcatttgatg 29723710  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 3025397 - 3025357
Alignment:
Q  129 gttgcatagagaaggagagacatgctctccttgaattgaag 169  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  3025397 gttgcatagagaaggagagacaagcactccttgagttgaag 3025357  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 37129546 - 37129697
Alignment:
Q  41 aagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctatagcttatgc---aaaacatgttggttgcatag 137  Q
    |||||||||||| |||||||||||||||||| ||| ||  |||| || |||||||  | ||||| | |||||  |||   ||||||||||| |||||||     
T  37129546 aagttagttggaacaatctttgttgtgttgcagttcgaccttcttttctccaactactctggagttgtagctgttgcggcaaaacatgttgcttgcatac 37129645  T
Q  138 agaaggagagacatgctctccttgaattgaaggcaagccttatgttcgatga 189  Q
    ||||||||||||||||||||||||| |||||||||||| || |||| |||||    
T  37129646 agaaggagagacatgctctccttgagttgaaggcaagctttgtgttggatga 37129697  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 37136782 - 37136842
Alignment:
Q  118 aaaacatgttggttgcatagagaaggagagacatgctctccttgaattgaaggcaagcctt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37136782 aaaacatgttggttgcatagagaaggagagacatgctctccttgagttgaaggcaagcctt 37136842  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 35145169 - 35145021
Alignment:
Q  14 aagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctatagctt 113  Q
    ||||||||||||| ||||| |||| |||||||||||||| |||||| |||  |||||| ||| ||| |||| || ||||||| |||||||| | |||       
T  35145169 aagatgatgagtactgttgggtctatgaagttagttggaacaatctatgtattgttgcagttagagcttcttttgtccaactattgtggagttgtag--- 35145073  T
Q  114 atgcaaaacatgtt------ggttgcatagagaaggagagacatgctctcct 159  Q
     |||||||||||||      ||||||||||||||||||||||||| ||||||    
T  35145072 ttgcaaaacatgttggtttaggttgcatagagaaggagagacatggtctcct 35145021  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 37143799 - 37143918
Alignment:
Q  8 aagattaagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagcta 107  Q
    ||||| ||||||||||| |  ||||| ||| | ||||||||||||||||||||| |||||||||  || | ||||||||| ||||||| || |||||||     
T  37143799 aagatgaagatgatgagcaccgttgtttctatcaagttagttggagcaatctttattgtgttgcaatttgcgattctcttgtccaactattctggagctg 37143898  T
Q  108 tagcttatgcaaaacatgtt 127  Q
    |||||  ||||||| |||||    
T  37143899 tagctgctgcaaaaaatgtt 37143918  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 37162378 - 37162441
Alignment:
Q  127 tggttgcatagagaaggagagacatgctctccttgaattgaaggcaagccttatgttcgatgat 190  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||    
T  37162378 tggttgtatagagaaggagagacatgctctccttgagttgaaggccagccttgtgttggatgat 37162441  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 38745419 - 38745459
Alignment:
Q  129 gttgcatagagaaggagagacatgctctccttgaattgaag 169  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  38745419 gttgcatagagaaggagagacatgctctccttgagttgaag 38745459  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 38745617 - 38745670
Alignment:
Q  308 gagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagt 361  Q
    |||||||||| |||||||||| ||||||||||||||| || |||| ||||||||    
T  38745617 gagttgcggcatttaaagtatttgaacctcagttggaatctgttttcaaacagt 38745670  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 37162277 - 37162364
Alignment:
Q  41 aagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctatagcttatgcaaaacatgttg 128  Q
    |||||||||||||||||||||||| |||||| ||| |   |||| || ||||||| || ||||||| | | | |||||||||||||||    
T  37162277 aagttagttggagcaatctttgttctgttgcagttcggctttcttttgtccaactattatggagctgtggttgatgcaaaacatgttg 37162364  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 37143933 - 37143981
Alignment:
Q  127 tggttgcatagagaaggagagacatgctctccttgaattgaaggcaagc 175  Q
    |||||||| |||||| ||||||||||||||||||||  |||||| ||||    
T  37143933 tggttgcaaagagaatgagagacatgctctccttgagctgaaggaaagc 37143981  T

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