View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_80 (Length: 241)
Name: NF9782A_low_80
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_80 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 9192 - 8966
Alignment:
| Q |
7 |
gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagttgaaaatgggattgggaagaaacgtgggatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
9192 |
gaaaaagaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatc |
9094 |
T |
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| Q |
107 |
tttatttccacatgtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagct |
206 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| |
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| T |
9093 |
tttatttccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagct |
8996 |
T |
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| Q |
207 |
agtaatatctagtggcacattttcttcgac |
236 |
Q |
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|||||||||||||||||||| || |||||| |
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| T |
8995 |
agtaatatctagtggcacatatttttcgac |
8966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 16420480 - 16420254
Alignment:
| Q |
7 |
gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagttgaaaatgggattgggaagaaacgtgggatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
16420480 |
gaaaaagaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatc |
16420382 |
T |
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| Q |
107 |
tttatttccacatgtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagct |
206 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| |
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| T |
16420381 |
tttatttccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagct |
16420284 |
T |
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| Q |
207 |
agtaatatctagtggcacattttcttcgac |
236 |
Q |
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| T |
16420283 |
agtaatatctagtggcacatatttttcgac |
16420254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 5538285 - 5538515
Alignment:
| Q |
7 |
gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagttgaaaatgggattgggaagaaacgtgggatg |
106 |
Q |
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||||| |||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
5538285 |
gaaaaggaataggaactggttactaataattctcccactagcttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgt-ggatg |
5538383 |
T |
|
| Q |
107 |
tttatttccacatgtcaatcacttcc-tttgctctatgcttccttttgttttcctactttcttgctaatctgat--tatatattactctaataaattcta |
203 |
Q |
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|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| |
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| T |
5538384 |
tttatttccacacg-caatcacttccttttgctctatgcttccttttgttttcctactttcttgctaatcttattatatatattactctaataaatacta |
5538482 |
T |
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| Q |
204 |
gctagtaatatctagtggcacattttcttcgac |
236 |
Q |
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|||||||||||||| |||||||| || |||||| |
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| T |
5538483 |
gctagtaatatctaatggcacatatttttcgac |
5538515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 19932449 - 19932297
Alignment:
| Q |
46 |
aacttatttcctaacaatatgggacatagttgaaaatgggattgggaagaaacgtgggatgtttatttccacatgtcaatcacttcctttgctctatgct |
145 |
Q |
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|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||| |
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| T |
19932449 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtgg-atgtttatttccactagtcaatcagttccttttctctatgct |
19932351 |
T |
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| Q |
146 |
tccttttgttttcctactttcttgctaatctgattatatattactctaataaat |
199 |
Q |
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|||||||| ||||||||||| |||||||||| ||||||||||||| |||||||| |
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| T |
19932350 |
tccttttgctttcctactttattgctaatcttattatatattactttaataaat |
19932297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 18901668 - 18901509
Alignment:
| Q |
46 |
aacttatttcctaacaatatgggacatagttgaaaatgggattgggaagaaacgtggg------atgtttatttccacatgtcaatcacttcctttgctc |
139 |
Q |
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|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| |
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| T |
18901668 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttaatgtttatttccaccagtcaatcagttccttttctc |
18901569 |
T |
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| Q |
140 |
tatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaat |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
18901568 |
tatgcttccttttgctttcctactttcttgctaatcttattatatattactttaataaat |
18901509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 51784718 - 51784772
Alignment:
| Q |
46 |
aacttatttcctaacaatatgggacatagttgaaaatgggattgggaagaaacgt |
100 |
Q |
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| T |
51784718 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgt |
51784772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 18901487 - 18901448
Alignment:
| Q |
187 |
tactctaataaattctagctagtaatatctagtggcacat |
226 |
Q |
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||||||||||||| |||||||||||||||||||| ||||| |
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| T |
18901487 |
tactctaataaatactagctagtaatatctagtgtcacat |
18901448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 51784794 - 51784832
Alignment:
| Q |
161 |
actttcttgctaatctgattatatattactctaataaat |
199 |
Q |
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|||||||||||||||| ||||||||||||| |||||||| |
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| T |
51784794 |
actttcttgctaatcttattatatattactttaataaat |
51784832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 37940333 - 37940512
Alignment:
| Q |
7 |
gaaaaagaataggaaccggttacta--ataattctcccacgaacttatttcctaacaatatgggacatagttgaaaatgggattgggaagaaacgtggga |
104 |
Q |
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|||||||||||||||||||||| || |||| | ||| |||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||| ||| |
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| T |
37940333 |
gaaaaagaataggaaccggttattataataacattgtcactaacttatttcctaaaaatatggaacatagtggaaaatgagattgggaagaaacgt-gga |
37940431 |
T |
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| Q |
105 |
tgtttatttccacatgtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatata |
185 |
Q |
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||||||||||||| || ||||| ||||||| ||||||||| ||||| || ||||||||||||||||||| |||||||| |
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| T |
37940432 |
tgtttatttccactagttaatcagttcctttttcctatgcttctttttgcttacctactttcttgctaatcttattatata |
37940512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 37940550 - 37940589
Alignment:
| Q |
187 |
tactctaataaattctagctagtaatatctagtggcacat |
226 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
37940550 |
tactctaataaatactagctagtaatatctagtggcacat |
37940589 |
T |
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