View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9782A_low_82 (Length: 240)
Name: NF9782A_low_82
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_82 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 27492130 - 27491926
Alignment:
| Q |
21 |
ataaatatcacacattaaaatataaatcactttatattcaatt-atttttaatggtactcaatttcaaaaagttaattcactcaaaacatttattatcac |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27492130 |
ataaatatcacacattaaaacataaatcacttcatattaaattcatttttaatcgtactcaatttcaaaaagttaattcactcaaaacatttattatcac |
27492031 |
T |
|
| Q |
120 |
tagaaaatgaagcacacatcactttaagcacaaccaattttacaaaatgaattcattnnnnnnnttggtttgtgtcacatacataaccaaacacacacat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27492030 |
tagaaaatgaagcacacatcactttaagcacaaccaattttacaaaatgaattcattaaaaaaattggtttgtgtcacatacat-accaaacacacacat |
27491932 |
T |
|
| Q |
220 |
gctcat |
225 |
Q |
| |
|
|||||| |
|
|
| T |
27491931 |
gctcat |
27491926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University