View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_84 (Length: 239)
Name: NF9782A_low_84
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 9789750 - 9789580
Alignment:
| Q |
25 |
ttcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgtttcca |
124 |
Q |
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| T |
9789750 |
ttcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttccca |
9789651 |
T |
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| Q |
125 |
catctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatcta |
195 |
Q |
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| T |
9789650 |
catatcttcaacctagctgctgctgttgtcagacttttcagatctacaggtactatttttcactgcatcta |
9789580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 3586705 - 3586885
Alignment:
| Q |
14 |
ggacaagcgtattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttctt |
113 |
Q |
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| T |
3586705 |
ggacatgcttattcttcttaactgttcccgcattttctacatgtttatcttaact-ttcccgcattttttatttgcctatatatataagttattcttctt |
3586803 |
T |
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| Q |
114 |
aaccgtttccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatcta |
195 |
Q |
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| T |
3586804 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttttcagatctgcaggtactattttttaccgcatcta |
3586885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 44504580 - 44504713
Alignment:
| Q |
36 |
tgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgtttccacatctcttcaa |
135 |
Q |
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| T |
44504580 |
tgttcccgcattttctacatgtttatctcaactgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttcccacatctcttcaa |
44504679 |
T |
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| Q |
136 |
cctagctgctgctgttgtcagacttctcagatct |
169 |
Q |
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| T |
44504680 |
cttagctgctgctgttgtcagacttttcagatct |
44504713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 31678513 - 31678617
Alignment:
| Q |
91 |
tatagatataagttatttttcttaaccgtttccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgc |
190 |
Q |
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| T |
31678513 |
tatatatataagttattcttcttaaccgttcccacatcttttcaacctagctgctgctgttgtcagacttttcagatctacaggtacgatttttcaccgc |
31678612 |
T |
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| Q |
191 |
atcta |
195 |
Q |
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||||| |
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| T |
31678613 |
atcta |
31678617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 31678375 - 31678441
Alignment:
| Q |
14 |
ggacaagcgtattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattt |
80 |
Q |
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| T |
31678375 |
ggacatgcttatgcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattt |
31678441 |
T |
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