View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_89 (Length: 234)
Name: NF9782A_low_89
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36903577 - 36903357
Alignment:
| Q |
1 |
tacaaatgaatatatccaacaccacattgattattccaaatagtgatatagaggttcttaaaaaatgtcaacgtcatcaattgcccttggtatcttagtg |
100 |
Q |
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| T |
36903577 |
tacaaatgaatatatccaacaccacattgattattccaaatagtgatatagaggttcttaaaaaatgtcaacgtcatcaattgcccttggtatcttagtg |
36903478 |
T |
|
| Q |
101 |
aaaatagctgttagaagataatggtacagaggaatttgcgcagcaccatagaaaaccacaggcaaacaagctgctgcagaaattgagaacaaaatcaact |
200 |
Q |
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| T |
36903477 |
aaaatagctgttagaagataatggtacagaggaatttgcgcagcaccatagaaaaccacaggcaaacaagctgctgcagaaattgagaacaaaatcaact |
36903378 |
T |
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| Q |
201 |
taaatttgtggctaagcagaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36903377 |
taaatttgtggctaagcagaa |
36903357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 36883697 - 36883552
Alignment:
| Q |
76 |
atcaattgcccttggtatcttagtgaaaatagctgttagaagataatggtacagaggaatttgcgcagcaccatagaaaaccacaggcaaacaagctgct |
175 |
Q |
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| T |
36883697 |
atcagttgccgttggaaccttagttaaaatagacgttataagatcaaagtaaagaggaaattgtgcaacggcatagaaagtcacaggcaaacaagttgct |
36883598 |
T |
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| Q |
176 |
gcagaaattgagaacaaaatcaacttaaatttgtggctaagcagaa |
221 |
Q |
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| T |
36883597 |
gcataaattgggaacaaaatcgacttaaaattatggctaagcagaa |
36883552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 36893629 - 36893555
Alignment:
| Q |
147 |
catagaaaaccacaggcaaacaagctgctgcagaaattgagaacaaaatcaacttaaatttgtggctaagcagaa |
221 |
Q |
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|||||||| |||||||||||||| |||||| |||||| |||||||| | ||||||| || ||||||||||||| |
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| T |
36893629 |
catagaaagtcacaggcaaacaagttgctgcgtaaattgggaacaaaaccgacttaaaattatggctaagcagaa |
36893555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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