View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782A_low_90 (Length: 232)

Name: NF9782A_low_90
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782A_low_90
NF9782A_low_90
[»] chr5 (5 HSPs)
chr5 (28-168)||(32268817-32268957)
chr5 (34-192)||(41900158-41900316)
chr5 (136-208)||(32268755-32268825)
chr5 (42-117)||(41886271-41886346)
chr5 (135-184)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (124-191)||(15091347-15091414)
chr7 (126-188)||(10168806-10168868)
chr7 (126-188)||(10176331-10176393)
chr7 (63-104)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (130-191)||(2460597-2460658)
chr4 (112-185)||(2367656-2367729)
chr4 (130-179)||(2547544-2547593)
chr4 (133-185)||(2381378-2381430)
chr4 (131-191)||(6007665-6007725)
chr4 (127-185)||(566629-566687)
chr4 (132-185)||(2525763-2525816)
chr4 (134-179)||(12124836-12124881)
chr4 (134-179)||(12126892-12126937)
chr4 (126-191)||(55907434-55907499)
chr4 (133-185)||(2486313-2486365)
chr4 (133-185)||(5035628-5035680)
chr4 (145-191)||(1547469-1547515)
chr4 (127-177)||(2376228-2376278)
chr4 (133-171)||(2380123-2380161)
chr4 (130-179)||(2472104-2472153)
chr4 (124-164)||(8445271-8445311)
chr4 (144-184)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (124-191)||(513426-513493)
chr3 (126-177)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (125-185)||(14821628-14821688)
chr6 (133-185)||(6395781-6395833)
chr6 (133-181)||(6427432-6427480)
chr6 (145-179)||(6437161-6437195)
chr6 (143-185)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (126-185)||(32152212-32152271)
chr8 (133-179)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (126-191)||(1036176-1036241)
chr2 (126-179)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (136-185)||(15837967-15838016)
chr1 (126-185)||(33161439-33161498)
chr1 (133-177)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 32268957 - 32268817
Alignment:
Q  28 gatgaaaaaagaagaagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgct 127  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268957 gatgcaaaaagaagaagaaaatcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgct 32268858  T
Q  128 tgaaatctctctccatcgtctccaaacagttactctccatc 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32268857 tgaaatctctctccatcgtctccaaacagttactctccatc 32268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 41900158 - 41900316
Alignment:
Q  34 aaaagaagaagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaat 133  Q
    |||| |||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||  | ||||||||    
T  41900158 aaaaaaagaagaaaatcgataagttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaat 41900257  T
Q  134 ctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctt 192  Q
    |||||||  |||||||||||||||| |||||||||||||||  ||||||||| ||||||    
T  41900258 ctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctctt 41900316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 32268825 - 32268755
Alignment:
Q  136 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatcc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat--tctctctcacagtctatgatcc 32268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 41886271 - 41886346
Alignment:
Q  42 aagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 117  Q
    ||||||| ||||||||  |||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  41886271 aagaaaaacaatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaac 41886346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  135 tctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat 184  Q
    ||||||| |||| ||||| ||||| |||||||||||||||||||| ||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 15091347 - 15091414
Alignment:
Q  124 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 191  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctct 15091414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 10168806 - 10168868
Alignment:
Q  126 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 188  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 10176331 - 10176393
Alignment:
Q  126 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 188  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  63 ttcatatctaccagatgagtgttgggaatgtgtcttcaaatt 104  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 2460658 - 2460597
Alignment:
Q  130 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 191  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 2367656 - 2367729
Alignment:
Q  112 gacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    |||||||| || | |||| || |||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  2367656 gacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 2547593 - 2547544
Alignment:
Q  130 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 179  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  2547593 aaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 2547544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 2381378 - 2381430
Alignment:
Q  133 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgatt 2381430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 6007725 - 6007665
Alignment:
Q  131 aatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 191  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 566687 - 566629
Alignment:
Q  127 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||| || ||||||||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 2525816 - 2525763
Alignment:
Q  132 atctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    |||||||||| ||||||| |||||||| || |||||||||||| ||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 12124881 - 12124836
Alignment:
Q  134 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 179  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  134 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 179  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  126 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 191  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  133 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  133 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 1547469 - 1547515
Alignment:
Q  145 gtctccaaacagttactctccatcaccaaccgtcttcgattatctct 191  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 2376228 - 2376278
Alignment:
Q  127 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 177  Q
    ||||| |||||||||||||||||||||   || ||||||||||||||||||    
T  2376228 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgt 2376278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 2380123 - 2380161
Alignment:
Q  133 tctctctccatcgtctccaaacagttactctccatcacc 171  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2380123 tctctttccatcgtctccaaacagttactctcgatcacc 2380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 2472153 - 2472104
Alignment:
Q  130 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 179  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2472153 aaatctctttccatggtctccaaacagtttttctccatcaccaatcgtct 2472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 8445271 - 8445311
Alignment:
Q  124 tgcttgaaatctctctccatcgtctccaaacagttactctc 164  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  8445271 tgcttaaagtctctctccatcgtctcaaaacagttactctc 8445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 12121009 - 12121049
Alignment:
Q  144 cgtctccaaacagttactctccatcaccaaccgtcttcgat 184  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  12121009 cgtctcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 513426 - 513493
Alignment:
Q  124 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 191  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 51763146 - 51763197
Alignment:
Q  126 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 177  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| |||||    
T  51763146 cttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgt 51763197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 14821688 - 14821628
Alignment:
Q  125 gcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||    
T  14821688 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 6395833 - 6395781
Alignment:
Q  133 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    ||||||||| |||||||||| ||||| |||||||||||||| | |||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 6427480 - 6427432
Alignment:
Q  133 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttc 181  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 6437195 - 6437161
Alignment:
Q  145 gtctccaaacagttactctccatcaccaaccgtct 179  Q
    |||||||||||||| ||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtct 6437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 7993319 - 7993361
Alignment:
Q  143 tcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    |||||||||||||||| ||||||||||||| |||||| |||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgatt 7993361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 32152271 - 32152212
Alignment:
Q  126 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    |||||| || |||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 39516915 - 39516869
Alignment:
Q  133 tctctctccatcgtctccaaacagttactctccatcaccaaccgtct 179  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtct 39516869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  126 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 191  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 44575177 - 44575230
Alignment:
Q  126 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 179  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  44575177 cttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtct 44575230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 15837967 - 15838016
Alignment:
Q  136 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 33161498 - 33161439
Alignment:
Q  126 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 185  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgatt 33161439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  133 tctctctccatcgtctccaaacagttactctccatcaccaaccgt 177  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University