View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9782A_low_91 (Length: 231)
Name: NF9782A_low_91
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_91 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 31798691 - 31798862
Alignment:
| Q |
26 |
tggctttgtcataagattttcatggaccatccattaattcgtgattgaacttgaatcttcaaattgcctacttggattcctatt-nnnnnnnnnnnctac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
31798691 |
tggctttgtcataagattttcatggaccatccattatttcgtgattgaacttgaatctacaaattgcctacttgaattcctattaaaaaaaaaaaactac |
31798790 |
T |
|
| Q |
125 |
ttgaattatat--aaacaaaatcttgcaagaattgttctactgagcaatcgaactagcaattaaaatcaatt |
194 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31798791 |
ttgaattatataaaaaaaaaatcttgcaagaattgttctactgagcaatcgaactagtaattaaaatcaatt |
31798862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University