View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782A_low_96 (Length: 229)
Name: NF9782A_low_96
Description: NF9782A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782A_low_96 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 56176666 - 56176894
Alignment:
| Q |
1 |
atacctttaagaaattatctcaatagctaatagttttaaggattttattatattcgttgaatctgaaaatgttaatatgttaatataggaccatcatggc |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
56176666 |
atacctttaagaaattatctcaatagttaatagttttaaggatattattatattcgttgaatctgaaagtgttaatatgttaatataggaccatcatggc |
56176765 |
T |
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| Q |
101 |
tctttggaaggccagatctctgagtattgaacagaaggtccgattagttgaagacgatcctgaaaccagaagtgttgccagtgaagagagtggatcattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56176766 |
tctttggaaggccagatctctgagtattgaacagaaggtccgattagttgaagacgatcctgaaaccagaagtgttgccagtgaagagagtggatcattc |
56176865 |
T |
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| Q |
201 |
cttggcagtgacgatgttagcatgtctga |
229 |
Q |
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|||||| |||||||||||||||||||||| |
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| T |
56176866 |
cttggcggtgacgatgttagcatgtctga |
56176894 |
T |
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