View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782_high_3 (Length: 427)

Name: NF9782_high_3
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782_high_3
NF9782_high_3
[»] chr4 (5 HSPs)
chr4 (212-411)||(29723791-29723990)
chr4 (8-163)||(29723963-29724112)
chr4 (307-392)||(3025103-3025188)
chr4 (264-312)||(29723710-29723758)
chr4 (134-174)||(3025357-3025397)
[»] chr5 (9 HSPs)
chr5 (46-194)||(37129546-37129697)
chr5 (123-183)||(37136782-37136842)
chr5 (19-164)||(35145021-35145169)
chr5 (132-195)||(37162378-37162441)
chr5 (14-132)||(37143800-37143918)
chr5 (134-174)||(38745419-38745459)
chr5 (313-366)||(38745617-38745670)
chr5 (46-133)||(37162277-37162364)
chr5 (132-180)||(37143933-37143981)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 212 - 411
Target Start/End: Complemental strand, 29723990 - 29723791
Alignment:
Q  212 gttgcatagagaaggagacatgctctccatgatgccttatgttgcatcagcgacagttccacaacagttgagattccctgacctccaaggttcatttgat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29723990 gttgcatagagaaggagacatgctctccatgatgccttatgttgcatcagcgacagatccacaacagttgagattccctgacctccaaggttcatttgat 29723891  T
Q  312 ggagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagtatttttccagatatttttggttctcttggaagtcaagatcatttg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29723890 ggagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagtatttttccagatatttttggttctcttggaagtcaagatcatttg 29723791  T

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Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 29724112 - 29723963
Alignment:
Q  8 aagcagagattaagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtgg 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29724112 aagcaaagattaagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtgg 29724013  T
Q  108 agctatagcttatgcaaaacatgttggttgcatagagaaggagagacatgctctcc 163  Q
    ||||||||||||||| ||||||    ||||||||||||||  ||||||||||||||    
T  29724012 agctatagcttatgccaaacat----gttgcatagagaag--gagacatgctctcc 29723963  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 3025188 - 3025103
Alignment:
Q  307 ttgatggagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagtatttttccagatatttttggttctct 392  Q
    ||||| |||||||||| |||||||||| ||||||||||||||| || |||| ||||||||  ||| |||||  | |||||||||||    
T  3025188 ttgatcgagttgcggcatttaaagtatttgaacctcagttggaatctgttttcaaacagttatttcccagaattatttggttctct 3025103  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 29723758 - 29723710
Alignment:
Q  264 acagttccacaacagttgagattccctgacctccaaggttcatttgatg 312  Q
    |||| ||||||| |||||||| ||| |||||||||||||||||||||||    
T  29723758 acagctccacaatagttgagactccttgacctccaaggttcatttgatg 29723710  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 3025397 - 3025357
Alignment:
Q  134 gttgcatagagaaggagagacatgctctccttgaattgaag 174  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  3025397 gttgcatagagaaggagagacaagcactccttgagttgaag 3025357  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 37129546 - 37129697
Alignment:
Q  46 aagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctatagcttatgc---aaaacatgttggttgcatag 142  Q
    |||||||||||| |||||||||||||||||| ||| ||  |||| || |||||||  | ||||| | |||||  |||   ||||||||||| |||||||     
T  37129546 aagttagttggaacaatctttgttgtgttgcagttcgaccttcttttctccaactactctggagttgtagctgttgcggcaaaacatgttgcttgcatac 37129645  T
Q  143 agaaggagagacatgctctccttgaattgaaggcaagccttatgttcgatga 194  Q
    ||||||||||||||||||||||||| |||||||||||| || |||| |||||    
T  37129646 agaaggagagacatgctctccttgagttgaaggcaagctttgtgttggatga 37129697  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 37136782 - 37136842
Alignment:
Q  123 aaaacatgttggttgcatagagaaggagagacatgctctccttgaattgaaggcaagcctt 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37136782 aaaacatgttggttgcatagagaaggagagacatgctctccttgagttgaaggcaagcctt 37136842  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 35145169 - 35145021
Alignment:
Q  19 aagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctatagctt 118  Q
    ||||||||||||| ||||| |||| |||||||||||||| |||||| |||  |||||| ||| ||| |||| || ||||||| |||||||| | |||       
T  35145169 aagatgatgagtactgttgggtctatgaagttagttggaacaatctatgtattgttgcagttagagcttcttttgtccaactattgtggagttgtag--- 35145073  T
Q  119 atgcaaaacatgtt------ggttgcatagagaaggagagacatgctctcct 164  Q
     |||||||||||||      ||||||||||||||||||||||||| ||||||    
T  35145072 ttgcaaaacatgttggtttaggttgcatagagaaggagagacatggtctcct 35145021  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 37162378 - 37162441
Alignment:
Q  132 tggttgcatagagaaggagagacatgctctccttgaattgaaggcaagccttatgttcgatgat 195  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||    
T  37162378 tggttgtatagagaaggagagacatgctctccttgagttgaaggccagccttgtgttggatgat 37162441  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 37143800 - 37143918
Alignment:
Q  14 agattaagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctat 113  Q
    |||| ||||||||||| |  ||||| ||| | ||||||||||||||||||||| |||||||||  || | ||||||||| ||||||| || ||||||| |    
T  37143800 agatgaagatgatgagcaccgttgtttctatcaagttagttggagcaatctttattgtgttgcaatttgcgattctcttgtccaactattctggagctgt 37143899  T
Q  114 agcttatgcaaaacatgtt 132  Q
    ||||  ||||||| |||||    
T  37143900 agctgctgcaaaaaatgtt 37143918  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 38745419 - 38745459
Alignment:
Q  134 gttgcatagagaaggagagacatgctctccttgaattgaag 174  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  38745419 gttgcatagagaaggagagacatgctctccttgagttgaag 38745459  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 38745617 - 38745670
Alignment:
Q  313 gagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagt 366  Q
    |||||||||| |||||||||| ||||||||||||||| || |||| ||||||||    
T  38745617 gagttgcggcatttaaagtatttgaacctcagttggaatctgttttcaaacagt 38745670  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 37162277 - 37162364
Alignment:
Q  46 aagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctatagcttatgcaaaacatgttg 133  Q
    |||||||||||||||||||||||| |||||| ||| |   |||| || ||||||| || ||||||| | | | |||||||||||||||    
T  37162277 aagttagttggagcaatctttgttctgttgcagttcggctttcttttgtccaactattatggagctgtggttgatgcaaaacatgttg 37162364  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 37143933 - 37143981
Alignment:
Q  132 tggttgcatagagaaggagagacatgctctccttgaattgaaggcaagc 180  Q
    |||||||| |||||| ||||||||||||||||||||  |||||| ||||    
T  37143933 tggttgcaaagagaatgagagacatgctctccttgagctgaaggaaagc 37143981  T

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