View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_high_4 (Length: 351)
Name: NF9782_high_4
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 152 - 321
Target Start/End: Complemental strand, 9611909 - 9611746
Alignment:
| Q |
152 |
tcattattttatatttcttccaaaacaaagtgaaatgattgggttggtcaatattattttataccatcatcaaattacaaaagatggaaattagatcaaa |
251 |
Q |
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| T |
9611909 |
tcattattttatagttcttccaaaaccaagtgaaatgattgggttggtcaatattattttatacc---atcaaattacaaaagatggaagttagatcaaa |
9611813 |
T |
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| Q |
252 |
gaaacatttgagttaagaaaataataatatacatgttttggatttcaacatctaaacaacttttcgacgt |
321 |
Q |
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| T |
9611812 |
gaaacatttgagttaagaa---aatagtacacatgttttggatttcaacatctaaactatttttcgacgt |
9611746 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 21237439 - 21237473
Alignment:
| Q |
33 |
cttcgctagtagggtttaatataagtaatacatga |
67 |
Q |
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| T |
21237439 |
cttcgttagtagggtttaatataagtaatacatga |
21237473 |
T |
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