View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9782_high_6 (Length: 335)
Name: NF9782_high_6
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 10271633 - 10271951
Alignment:
| Q |
1 |
tttggtgtttgtaggaccaatacacctaggtgtcttgaattgagccgcagatgctcccaatccaacataatgctcaagaatcttctggaatgttcctttt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10271633 |
tttggtgtttgtaggaccaatgcacctaggtgtcttgaattgagccgcagatgctcctaatccaacataatgctcaagaatcttctggaatgttcctttt |
10271732 |
T |
|
| Q |
101 |
cgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10271733 |
cgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcat |
10271832 |
T |
|
| Q |
201 |
caagcacatcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagccaatcacttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10271833 |
caagcacatcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagtcaatcacttc |
10271932 |
T |
|
| Q |
301 |
aattttctcctcagctaac |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10271933 |
aattttctcctcagctaac |
10271951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 10263461 - 10263779
Alignment:
| Q |
1 |
tttggtgtttgtaggaccaatacacctaggtgtcttgaattgagccgcagatgctcccaatccaacataatgctcaagaatcttctggaatgttcctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10263461 |
tttggtgtttgtaggaccaatacacctaggtgtcttgaattgagccgcggatgaacctaatccaacataatgctcaagaatcttctggaatgttcctttc |
10263560 |
T |
|
| Q |
101 |
cgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
10263561 |
cgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagccagcatcaacaaaagacttatccaaacatgtacaacattcat |
10263660 |
T |
|
| Q |
201 |
caagcacatcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagccaatcacttc |
300 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
10263661 |
aaagcacagcatcacttgcttcaccgctgatttcccagaagataacatagtgtcctgggtcattggataaatcaatgtagctagtgtagtcaatcacttc |
10263760 |
T |
|
| Q |
301 |
aattttctcctcagctaac |
319 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10263761 |
cattttctcctcagctaac |
10263779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 10241490 - 10241808
Alignment:
| Q |
1 |
tttggtgtttgtaggaccaatacacctaggtgtcttgaattgagccgcagatgctcccaatccaacataatgctcaagaatcttctggaatgttcctttt |
100 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| ||| | ||| | || |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10241490 |
tttggtgtttgtaggagcaacacacctaggtgtcttgaactgactcacagcaacacctaatccaacataatgttcaagaatcttctggaatgttcctttc |
10241589 |
T |
|
| Q |
101 |
cgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcat |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
10241590 |
cgaacaagtcggagttcaagggccgcaatacctttgacttttctagaactaacatagccagcatcaacaaaagacttatccaaacatgtacaacattcac |
10241689 |
T |
|
| Q |
201 |
caagcacatcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagccaatcacttc |
300 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
10241690 |
caagcacttcatcacttgcttcaccactgatttcccaaaaaataacataatgtcctggttctttggataaatcaatgtagctagtatagtcaatcacttc |
10241789 |
T |
|
| Q |
301 |
aattttctcctcagctaac |
319 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
10241790 |
cattttctcttcagctaac |
10241808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 5 - 319
Target Start/End: Original strand, 10283125 - 10283439
Alignment:
| Q |
5 |
gtgtttgtaggaccaatacacctaggtgtcttgaattgagccgcagatgctcccaatccaacataatgctcaagaatcttctggaatgttccttttcgaa |
104 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||||||||| | ||||||| || ||||||||||||||||||||||||||| |||||||||| | | || |
|
|
| T |
10283125 |
gtgtttgtgggagcaacacacctaggtgtcttgaattgactcacagatgcacctaatccaacataatgctcaagaatcttcatgaatgttcctctcctaa |
10283224 |
T |
|
| Q |
105 |
caagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcatcaag |
204 |
Q |
| |
|
||| |||||||||||||||| | || ||||| || | ||||||| |||||| |||| |||| |||||| |||||| || || | ||||| ||| |||| |
|
|
| T |
10283225 |
caactcggagttcaagggcttcgatagctttggctcttctagaaccaacatatccaatatcagcaaaagtcttgtctaaacagctgcaacactcaccaag |
10283324 |
T |
|
| Q |
205 |
cacatcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagccaatcacttcaatt |
304 |
Q |
| |
|
||| ||||| |||||||||||| |||||||||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
10283325 |
cacttcatcgcttgcttcgccattgatttcccaaaagataacatagtgtcctggttgtttagataaatcaatgtagctagtgtagtcaatcacttctatt |
10283424 |
T |
|
| Q |
305 |
ttctcctcagctaac |
319 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
10283425 |
ttctccttagctaac |
10283439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 13978996 - 13979045
Alignment:
| Q |
68 |
taatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttc |
117 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | ||||| ||||||||| |
|
|
| T |
13978996 |
taatgatcaagaatcttttggaatgttcctttcccaacaactcggagttc |
13979045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 59 - 275
Target Start/End: Complemental strand, 48369897 - 48369681
Alignment:
| Q |
59 |
aatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagc |
158 |
Q |
| |
|
||||||| ||||| ||||||||||| || ||||||||||| | ||||| ||| ||||| | ||||||||| | |||||||| | ||||||| |||| |
|
|
| T |
48369897 |
aatccaaggtaatgatcaagaatcttttgaaatgttcctttcctaacaactcgaagttctaaggctccaatagcgttgactttacgagaactagtgtagc |
48369798 |
T |
|
| Q |
159 |
caagatcaacaaaagacttgtccaagcatgtacaacattcatcaagcacatcatcacttgcttcgccactgatttcccagaagataacataatgtcctgg |
258 |
Q |
| |
|
| ||| ||||||||||||||||| || | |||||||||| |||||| || ||||||||||| || |||||||||||||||| ||||| | ||||| |
|
|
| T |
48369797 |
ctgcatcgacaaaagacttgtccaaacagttgcaacattcatgaagcacttcttcacttgcttccccgttgatttcccagaagattacatagttccctgg |
48369698 |
T |
|
| Q |
259 |
ttctttcgataaatcaa |
275 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
48369697 |
ctctttggataaatcaa |
48369681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University